ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40l21 |
|---|---|
| Clone Library Name | barley_pub |
>ALLP_BACSU (P94575) Probable allantoin permease (Allantoin transport protein)| Length = 490 Score = 64.7 bits (156), Expect = 2e-10 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 1/190 (0%) Frame = +2 Query: 2 GQVISDPIELLSRIGGPATKVLAIFGXXXXXXXXXXXXXXXXPANTLVALAPQXXXXXXX 181 G+ I D +++L+R P VL++ PA + P+ Sbjct: 291 GEPIWDVVDILARFDNPYVIVLSVITLCIATISVNVAANIVSPAYDIANALPKYINFKRG 350 Query: 182 XXXXXXXXXXXQPWRLLSSSES-FVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDAL 358 PW+L+ S+ S + F L+G ++GP+ G+++AD++I+R+ L VD L Sbjct: 351 SFITALLALFTVPWKLMESATSVYAFLGLIGG--MLGPVAGVMMADYFIIRKRELSVDDL 408 Query: 359 YSEEDDSPYYFQXXXXXXXXXXXXXXXXXXXXXXLHKVGVLPTMSKALVVAYDNAWFVSF 538 YSE Y+ + +G+ + K+L YD +WFV Sbjct: 409 YSETGRYVYW--------KGYNYRAFAATMLGALISLIGMYVPVLKSL---YDISWFVGV 457 Query: 539 FVAGATYCLL 568 ++ Y +L Sbjct: 458 LISFLFYIVL 467
>FUR4_SCHPO (Q10279) Uracil permease| Length = 581 Score = 55.8 bits (133), Expect = 1e-07 Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 7/137 (5%) Frame = +2 Query: 2 GQVISDPIELLSRI-------GGPATKVLAIFGXXXXXXXXXXXXXXXXPANTLVALAPQ 160 G + DP +LL+ G A FG N L AL P Sbjct: 318 GTTLWDPTQLLASFLDHSNAHGVRAGVFFIAFGLCIAQLGVNIAANSVSAGNDLSALLPT 377 Query: 161 XXXXXXXXXXXXXXXXXXQPWRLLSSSESFVFTWLLGNAALMGPIGGIVLADHYIVRRTA 340 PW LLSS+ +F T+L + + G+++AD+Y VR+ Sbjct: 378 VINVRRGGYIASIIALCMCPWNLLSSNNNFT-TYLSSYSVFLSSFAGVIIADYYFVRKGL 436 Query: 341 LDVDALYSEEDDSPYYF 391 + V LYS SPYYF Sbjct: 437 IRVAPLYSSSSSSPYYF 453
>ALLP_ECOLI (P75712) Putative allantoin permease (Allantoin transport protein)| Length = 484 Score = 51.2 bits (121), Expect = 2e-06 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 1/151 (0%) Frame = +2 Query: 140 LVALAPQXXXXXXXXXXXXXXXXXXQPWRLLSSSES-FVFTWLLGNAALMGPIGGIVLAD 316 + A+AP PW+L+ + +S ++F ++G ++GP+ G+++A Sbjct: 337 IAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGG--MLGPVIGVMMAH 394 Query: 317 HYIVRRTALDVDALYSEEDDSPYYFQXXXXXXXXXXXXXXXXXXXXXXLHKVGVLPTMSK 496 +++V R +++D LY+ D YY +H + L +S Sbjct: 395 YFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVS- 453 Query: 497 ALVVAYDNAWFVSFFVAGATYCLLRLQRGVE 589 WFV VA A Y LL+ + E Sbjct: 454 ---------WFVGVIVAFAAYALLKKRTTAE 475
>FUI1_YEAST (P38196) Uridine permease| Length = 639 Score = 50.1 bits (118), Expect = 5e-06 Identities = 43/149 (28%), Positives = 64/149 (42%), Gaps = 2/149 (1%) Frame = +2 Query: 128 PANT-LVALAPQXXXXXXXXXXXXXXXXXXQPWRLLSSSESFVFTWLLGNAALMGPIGGI 304 PA T L AL P+ PW LLSSS F T L A + I G+ Sbjct: 441 PAGTDLTALLPKFINIRRGSYICALISLAICPWDLLSSSSKFT-TALAAYAVFLSAIAGV 499 Query: 305 VLADHYIVRRTALDVDALYSEEDDSPY-YFQXXXXXXXXXXXXXXXXXXXXXXLHKVGVL 481 + AD++IVR+ +++ Y+++ S Y Y + L VGV Sbjct: 500 ISADYFIVRKGYVNIFHCYTDKPGSYYMYNKYGTNWRAVVAYIFGIAPNFAGFLGSVGVS 559 Query: 482 PTMSKALVVAYDNAWFVSFFVAGATYCLL 568 + A+ V Y N +FV + +A +YC+L Sbjct: 560 VPIG-AMKVYYLN-YFVGYLLAALSYCIL 586
>FUR4_YEAST (P05316) Uracil permease| Length = 633 Score = 39.3 bits (90), Expect = 0.010 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +2 Query: 218 PWRLLSSSESFVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 391 PW L+++S F L A + I G+V +D+++VRR + + +YS + S Y + Sbjct: 455 PWNLMATSSKFTMA-LSAYAIFLSSIAGVVCSDYFVVRRGYIKLTHIYSHQKGSFYMY 511
>DAL4_YEAST (Q04895) Allantoin permease (Allantoin transport protein)| Length = 635 Score = 37.4 bits (85), Expect = 0.036 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = +2 Query: 218 PWRLLSSSESFVFTWLLGNAAL-MGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 391 PW L++SS F T LG A+ + I G++ AD+++VRR + + L+ + S Y F Sbjct: 457 PWNLMASSSKF--TSALGAYAIFLSSIAGVICADYFVVRRGYVKLTHLFLAQKGSFYMF 513
>UBP20_HUMAN (Q9Y2K6) Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.1.2.15)| (Ubiquitin thioesterase 20) (Ubiquitin-specific-processing protease 20) (Deubiquitinating enzyme 20) Length = 913 Score = 33.5 bits (75), Expect = 0.52 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -1 Query: 313 REHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGERECL 158 R+ D+SD +R P EDE L+ R +GD + R G + E E L Sbjct: 261 RDSDSSDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSQAETELL 312
>Y2357_CORGL (P0C1E6) Probable GTP-binding protein Cgl2357/cg2589| Length = 501 Score = 31.2 bits (69), Expect = 2.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 607 TVLSFHFNPSLETEQAVGGAGDEETDEPG 521 T+L FHF+P ++ E+ GAGD G Sbjct: 56 TLLDFHFHPHVKAERGANGAGDHRNGARG 84
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 31.2 bits (69), Expect = 2.6 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -2 Query: 315 SASTMPPIGPMSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATRV 136 SA++ P +++ PSS + S S+ S++ +SAP ++ + AS++ Sbjct: 472 SAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSA 531 Query: 135 FAGATTLAAMLVVMMA 88 + ATT A + A Sbjct: 532 SSAATTAATTIATTAA 547
>TRPA_GLOVI (Q7NHC5) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 276 Score = 30.4 bits (67), Expect = 4.4 Identities = 26/91 (28%), Positives = 43/91 (47%) Frame = -2 Query: 285 MSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATRVFAGATTLAAM 106 ++A P + + L L R+G + S PLA+ A+ATR A TT A+ Sbjct: 29 ITAGDPDLETTAEALLTLD-RNGADLLELGLPYSDPLADGPTIQAAATRALARGTTPGAV 87 Query: 105 LVVMMARVIPKMARTLVAGPPMRLRSSMGSE 13 L ++AR+ P++ L+ L ++G E Sbjct: 88 L-DLVARLTPELRAPLIVFTYFNLILAVGIE 117
>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2| Length = 841 Score = 30.4 bits (67), Expect = 4.4 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -1 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 197 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Q Sbjct: 86 VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARSQPAASQ 142
>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 30.0 bits (66), Expect = 5.8 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = -1 Query: 313 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 146 R S+RPHE + G+D+ G E+ P ++ RG R C RR Sbjct: 5 RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64 Query: 145 HQ 140 H+ Sbjct: 65 HR 66
>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 30.0 bits (66), Expect = 5.8 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = -1 Query: 313 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 146 R S+RPHE + G+D+ G E+ P ++ RG R C RR Sbjct: 5 RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64 Query: 145 HQ 140 H+ Sbjct: 65 HR 66
>DPO3A_STRCO (Q9Z618) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1179 Score = 29.6 bits (65), Expect = 7.6 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 4/23 (17%) Frame = -1 Query: 556 GGAGDEETDEPG----VVIGHDE 500 GG GDE++DEPG VV G DE Sbjct: 946 GGMGDEQSDEPGFGLDVVFGEDE 968
>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle| protein 1) Length = 285 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Frame = -1 Query: 310 EHDASDRPHERRVS------EQPGEDEALAGAEQPPRLQGDAEQRRGERTLGE 170 EH + ++P + ++S EQP + A EQP Q E GE++LGE Sbjct: 132 EHASGEQPSDEQLSGEHASGEQPSGEHA--SGEQPSGEQPSGEHASGEQSLGE 182
>IF2_PSEPF (Q3KI84) Translation initiation factor IF-2| Length = 837 Score = 29.3 bits (64), Expect = 9.9 Identities = 19/61 (31%), Positives = 27/61 (44%) Frame = -1 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRG 188 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Sbjct: 86 VRKKKVFVQRSPEEIEAERKRELDERRAVENAARQKAEEEARVRAEEEARRQPAAPSAPA 145 Query: 187 E 185 E Sbjct: 146 E 146
>IF2_PSESM (Q87WQ5) Translation initiation factor IF-2| Length = 841 Score = 29.3 bits (64), Expect = 9.9 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -1 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 197 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Q Sbjct: 86 VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARNQPAAGQ 142
>SBCC_PSEAE (Q9HWB8) Nuclease sbcCD subunit C| Length = 1211 Score = 29.3 bits (64), Expect = 9.9 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -1 Query: 265 QPGEDEALAGAEQPPR--LQGDAEQRRGERTLGERECLRRERHQ 140 Q D L A+ P R Q ++E RR ERTL ER+ L R+ +Q Sbjct: 357 QAQADNHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQ 400
>ASPX_VULVU (P53353) Sperm acrosomal protein FSA-ACR.1 precursor (Fragment)| Length = 349 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -1 Query: 310 EHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGER 167 E ++RP + S + E A AEQ Q +EQ GE+ LGE+ Sbjct: 211 EQAVAERPSGEQASIEKASSEQ-ASAEQASAEQASSEQASGEKPLGEQ 257
>IF2_PSE14 (Q48E77) Translation initiation factor IF-2| Length = 843 Score = 29.3 bits (64), Expect = 9.9 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -1 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 197 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Q Sbjct: 86 VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARNQPAAGQ 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,747,246 Number of Sequences: 219361 Number of extensions: 920014 Number of successful extensions: 4081 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3670 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4064 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
