>YAI5_SCHPO (Q09893) Hypothetical protein C24B11.05 in chromosome I|
          Length = 226

 Score = 75.9 bits (185), Expect = 8e-14
 Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
 Frame = +3

Query: 225 YPLSSGISSHVKTNIEAYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYNFDYDEY 404
           YP S  I + +   I A+  +KLGI   + E L  + Y++YG  + GL  + +  D  +Y
Sbjct: 17  YPKSYKIHNMMAARITAFFSDKLGIPTEEAERLREVYYRHYGIAIRGL-VLHHEIDAVDY 75

Query: 405 HSFVHGRLPYDN-IKPDPVLKHILKNMR--IRKLIFTNGDMIHAVRALKRLGLEDCFEGI 575
              V   LP +  IK D VL+ +L  +R   +  IFTN  ++HA R LK LG+EDCF+GI
Sbjct: 76  DQRVDQSLPLEKVIKKDEVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDGI 135

>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic|
           region
          Length = 321

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
 Frame = +3

Query: 150 EFDERCLKVQDPKXXXXXXXXXXXXYPLSSGISSHVKTNIEAYMVEKLGIEESKIENLGN 329
           E D   L   DP             Y  S+ +   ++ ++  +   +LG ++ + E L  
Sbjct: 39  EVDPPKLPDPDPARKVFFFDIDNTLYRKSTKVQLLMQQSLSNFFKYELGFDDDEAERLIE 98

Query: 330 LLYKNYGTTMAGLRAIGYNFDYDEYHSFVHGRLPY-DNIKPDPVLKHILKNMRIRKL--- 497
             Y+ YG ++ GL       D  +Y++F+   LP  D +KPD  L+ +L N++ +KL   
Sbjct: 99  SYYQEYGLSVKGLIKNKQIDDVLQYNTFIDDSLPLQDYLKPDWKLRELLINLKKKKLGKF 158

Query: 498 ----IFTNGDMIHAVRALKRLGLEDCFEGI 575
               +FTN    HA+R +K LG+ D F+GI
Sbjct: 159 DKLWLFTNSYKNHAIRCVKILGIADLFDGI 188

>SSM1_YEAST (P53078) Protein SSM1|
          Length = 280

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
 Frame = +3

Query: 225 YPLSSGISSHVKTNIEAYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYNFDYDEY 404
           Y  S+ I   ++ +I  +    L +       L N  YK YG  + GL  + +  +  EY
Sbjct: 67  YKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGL-VMFHKVNALEY 125

Query: 405 HSFVHGRLPYDNI-KPDPVLKHILKNMR----IRKL-IFTNGDMIHAVRALKRLGLEDCF 566
           +  V   LP  +I KPD  L+++L  +R    I KL +FTN    HA+R L+ LG+ D F
Sbjct: 126 NRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLF 185

Query: 567 EGI 575
           +G+
Sbjct: 186 DGL 188

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 33.5 bits (75), Expect = 0.46
 Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 255 RVMRSRSSAGTECRRGRRAGSRTWGPGP*G---SARRTP 148
           RV   R   GTE  RG  AG R WGP P G     RR P
Sbjct: 401 RVESPREWGGTESPRGWEAGPREWGPSPGGRGDGPRRRP 439

>YOD3_CAEEL (P34595) Hypothetical protein ZC262.3 in chromosome III|
          Length = 773

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +3

Query: 378 GYNFDYDEYHSFVHGRLPYDNIKPDPVLKHILKNMRIRKLIFTNGDMIHAVRALKRLGLE 557
           G N    E H++ H +L +D   P P L+HI+  +R   L   NG +IH    LK L +E
Sbjct: 73  GSNIQRLELHNWQHDQLNFDIFAPFPQLEHII--LRDGDLESLNGTVIHP--TLKVLSIE 128

Query: 558 D 560
           +
Sbjct: 129 N 129

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 14  LSPYASERALEA-SKAPHTSAFASASSVALPQRRTVSSSFHQSPDHGVRRALP---QGPG 181
           LSP  S  A  A + A   SA +S+SS +     + SSS     D GVR   P    GP 
Sbjct: 358 LSPARSPSAPRAPAAAARRSASSSSSSSSSSSSSSSSSSSEGEEDEGVRPGAPLARAGPP 417

Query: 182 PQVRLPALRPR 214
           P    PA  PR
Sbjct: 418 PSPPAPAAAPR 428

>ATP8_MYXGL (O63913) ATP synthase protein 8 (EC 3.6.3.14) (ATPase subunit 8)|
           (A6L)
          Length = 54

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 550 PSLLRALTAWIMSPLVKMSLRMRMFLRICLRTXXXXXXXXXXLPWTKLW 404
           P LL AL+ W+  PL+ +SL    FL + L+T           PW   W
Sbjct: 8   PWLLMALSLWVCFPLMMLSL--SSFLPLTLKTSLPSTLKSSPNPWILPW 54

>KR109_HUMAN (P60411) Keratin-associated protein 10-9 (Keratin-associated|
           protein 10.9) (High sulfur keratin-associated protein
           10.9) (Keratin-associated protein 18-9)
           (Keratin-associated protein 18.9)
          Length = 292

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -2

Query: 357 SWCHSSYTAGCQGFRSCSPQYPASQPCRLQC 265
           S C SS T  C    SC P Y  S PC+  C
Sbjct: 69  SGCTSSCTPSCCQQSSCQPAYCTSSPCQQAC 99

>LEPA_FRATT (Q5NEF8) GTP-binding protein lepA|
          Length = 594

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 25/96 (26%), Positives = 42/96 (43%)
 Frame = +3

Query: 273 AYMVEKLGIEESKIENLGNLLYKNYGTTMAGLRAIGYNFDYDEYHSFVHGRLPYDNIKPD 452
           AY V++LG+   K+++L +L     G  +AG++ I          +  H   P D  KP 
Sbjct: 231 AYQVDRLGVFTPKMKDLDHLKAGEVGFIVAGIKDI---HGAPVGDTLTHAHNPTD--KPV 285

Query: 453 PVLKHILKNMRIRKLIFTNGDMIHAVRALKRLGLED 560
           P  K +   +       ++ D      AL++L L D
Sbjct: 286 PGFKKVQPQVYAGMFTISSDDYPDFREALEKLSLND 321

>RDP1_SCHPO (O13862) Transcriptional activator protein rdp1 (Rhp51-DRE-binding|
           protein 1)
          Length = 478

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 2   LPLSLSPYASERALEASKAPHTSAFASASSVALPQRRTVSSSFHQSPDH 148
           +P + +PYA    + A   P+TS   +    A+P   ++SSS  Q P H
Sbjct: 334 IPRTAAPYAPSMNMFAQNGPNTSLLPT----AMPSDVSISSSLQQQPIH 378

>AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein|
          Length = 437

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 434 RQHQARPRSQAYSQEHAHPQAHFHQR*H 517
           R  Q  P    YS  HAH QAH H   H
Sbjct: 88  RSEQGLPAHNTYSTPHAHTQAHTHAHSH 115

>HFW1_DROME (Q9W568) Protein halfway precursor (Protein singed wings)|
          Length = 611

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 371 GNWLQLRLRRVPQLCPW-KAALRQHQARPRSQAYSQEHAHPQA--HFHQR*HDPCRESPQ 541
           G WL L L  V   C   + A     A    ++    HAHPQA  H H   H P +E  Q
Sbjct: 7   GTWLLLLLLLVAGACARPEIAHTPDPAALGEESTPHAHAHPQARHHHHAHPHAPLKEDEQ 66

Query: 542 -EAGPGGLLRGDHL 580
             A P  +L  D++
Sbjct: 67  GTAIPAPILTTDNV 80

>MY18A_MOUSE (Q9JMH9) Myosin-18A (Myosin XVIIIa) (Myosin containing PDZ domain)|
           (Molecule associated with JAK3 N-terminus) (MAJN)
          Length = 2035

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 29  SERALEASKAPHTSAFASASSVALPQR--RTVSSSFHQSPDHGVRRALPQGPGPQVRLPA 202
           S+R+ + S A  TS  +  S+   PQ   RT+     Q P  G+ R     PGP+ R+P 
Sbjct: 142 SQRSRDES-ASETSTPSEHSAAPSPQVEVRTLEGQLMQHPGLGIPR-----PGPRSRVPE 195

Query: 203 LRPRRHSVPAELR 241
           L  +R   PA+LR
Sbjct: 196 LVTKR--FPADLR 206

>YIM2_YEAST (P40473) Hypothetical 39.5 kDa protein in SIM1-RPI1 intergenic|
           region
          Length = 351

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
 Frame = +2

Query: 83  ASSVALPQRRTVSSSFHQSPDHGVRRALPQ-----GPGPQVRLPALRPRRHSVPAELRDL 247
           A ++ +P  + +S+ + Q P   V++ +PQ     G GPQ +LP +     S    +   
Sbjct: 200 AYTLPMPANQWMSNPYMQPPQPQVQQIMPQYLYPPGMGPQAQLPTMSSNSESQTPVMSSQ 259

Query: 248 ITRQDQH 268
               +QH
Sbjct: 260 FLSLNQH 266

>NFRKB_HUMAN (Q6P4R8) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1299

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +2

Query: 14  LSPYASERALEASKAPHTSAFASASSVALPQRRTVSS-SFHQSPDH--GVRRALPQGP-G 181
           LSP +S+ A  +  A      + + S  L Q R V+  S    P    G  + LPQ P G
Sbjct: 776 LSPASSQTAPSSQAAARV--VSHSGSAGLSQVRVVAQPSLPAVPQQSGGPAQTLPQMPAG 833

Query: 182 PQVRLPALRPRRHSVP 229
           PQ+R+PA   +   VP
Sbjct: 834 PQIRVPATATQTKVVP 849

>MTA1_SORMA (O42837) Mating type protein SmtA-1|
          Length = 306

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +2

Query: 128 FHQSPDHGVRRALPQGPGPQVRLPALRPRRHSVPAELRDLITRQDQH 268
           F++ P +  R A+ Q    ++ + AL PR H+V AE  D+ T Q  H
Sbjct: 208 FNKRPHYQQRHAV-QADSSELGVSALFPRNHAVAAEADDVATLQLPH 253

>HEM3_YERPE (P46355) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 313

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 444 KPDPVLKHILKNMRIRKLIFTNGD---MIHAVRALKRLGLED 560
           +PD +++ +  N+  R     NGD   +I AV  LKRLGLE+
Sbjct: 140 RPDLIIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLEN 181

>ACEK_BURPS (Q63Y16) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)|
           (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P)
          Length = 603

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 324 GNLLYKNYGTTMAGLRAIGYNFDYDEY 404
           G++LYKN+G T  G R + Y++D  EY
Sbjct: 468 GDMLYKNFGVTRHG-RVVFYDYDEIEY 493

>ACEK_BURMA (Q62MX7) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)|
           (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P)
          Length = 603

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 324 GNLLYKNYGTTMAGLRAIGYNFDYDEY 404
           G++LYKN+G T  G R + Y++D  EY
Sbjct: 468 GDMLYKNFGVTRHG-RVVFYDYDEIEY 493

>ACEK_RALSO (Q8Y2Q7) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)|
           (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P)
          Length = 608

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 324 GNLLYKNYGTTMAGLRAIGYNFDYDEY 404
           G++LYKN+G T  G R + Y++D  EY
Sbjct: 474 GDMLYKNFGVTRHG-RVVFYDYDEIEY 499

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = +2

Query: 428 ALRQHQARPRSQAYSQEHAHPQAHFHQR*HDPCRESPQEAGPGGLLRGDH 577
           A  Q Q   + Q   Q+  H Q H HQ+ H   ++ P           DH
Sbjct: 664 AHHQQQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPASNDH 713

>ACEK_RALEU (Q8KLU8) Isocitrate dehydrogenase kinase/phosphatase (EC 2.7.11.5)|
           (EC 3.1.3.-) (IDH kinase/phosphatase) (IDHK/P)
          Length = 613

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 324 GNLLYKNYGTTMAGLRAIGYNFDYDEY 404
           G++LYKN+G T  G R + Y++D  EY
Sbjct: 474 GDMLYKNFGVTRHG-RVVFYDYDEIEY 499

>KPRS_NEIMB (P65235) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 327

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 LGNLLYKNYGTTMAGL-RAIGYNFDYDEYHSFVHGRLPYDNIKPDPVLKHILKNMRIRKL 497
           + N+LY       AG+ R +  +   D+   F    +P DNI   P+L + +K  RI  L
Sbjct: 116 VANMLYS------AGIDRVLTVDLHADQIQGFFD--IPVDNIYATPILLNDIKQQRIENL 167

Query: 498 IFTNGDMIHAVRA 536
              + D+   VRA
Sbjct: 168 TVVSPDIGGVVRA 180

>KPRS_NEIMA (P65234) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 327

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +3

Query: 321 LGNLLYKNYGTTMAGL-RAIGYNFDYDEYHSFVHGRLPYDNIKPDPVLKHILKNMRIRKL 497
           + N+LY       AG+ R +  +   D+   F    +P DNI   P+L + +K  RI  L
Sbjct: 116 VANMLYS------AGIDRVLTVDLHADQIQGFFD--IPVDNIYATPILLNDIKQQRIENL 167

Query: 498 IFTNGDMIHAVRA 536
              + D+   VRA
Sbjct: 168 TVVSPDIGGVVRA 180

>HEM3_YERPS (Q66G00) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 313

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +3

Query: 444 KPDPVLKHILKNMRIRKLIFTNGD---MIHAVRALKRLGLE 557
           +PD +++ +  N+  R     NGD   +I AV  LKRLGLE
Sbjct: 140 RPDLIIRDLRGNVGTRLAKLDNGDYQAIILAVAGLKRLGLE 180

>UREE_RALEJ (Q473Q8) Urease accessory protein ureE|
          Length = 221

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 12/50 (24%), Positives = 19/50 (38%)
 Frame = +2

Query: 422 KAALRQHQARPRSQAYSQEHAHPQAHFHQR*HDPCRESPQEAGPGGLLRG 571
           +A   +H        +S  H+H  +H H   HD   +   E    G + G
Sbjct: 165 QAVFHEHHGHDHDHGHSHSHSHSHSHSHSHSHDHDHDHDHEHDVKGHVHG 214

>CLC4E_RAT (Q67EQ1) C-type lectin domain family 4 member E (C-type lectin|
           superfamily member 9) (Macrophage-inducible C-type
           lectin)
          Length = 215

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 235 APGSHHTSRPTLKPTWLRSWVLRRARSKTLATCCI 339
           +P SHHT R   K + + SW +  A    L+ C I
Sbjct: 6   SPASHHTERECFKNSQVLSWTMAGASILFLSVCFI 40

>PACC_DEBHA (Q6BSZ4) pH-response transcription factor pacC/RIM101|
          Length = 617

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = +2

Query: 422 KAALRQHQARPRSQAYSQEHAHPQAHFHQ-R*HDPCRESPQ 541
           KA  RQ +     + Y  EH H Q  + Q   H+P    PQ
Sbjct: 261 KAHRRQQEEHDHEREYEHEHEHEQEQYRQLHFHNPSHSQPQ 301

>ABDA_TRICA (Q07961) Homeobox protein abdominal-A homolog|
          Length = 343

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +2

Query: 341 ELWHHDGRPQGNWLQLRLRRVPQLCPWKAALRQHQARPRSQAYS-QEHAHPQAH--FHQR 511
           ++W  + R +   L+  LR V ++       R+ Q R + Q    Q+    Q H   HQ 
Sbjct: 261 KIWFQNRRMK---LKKELRAVKEINEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQH 317

Query: 512 *HDPCRESPQEAGPGGLLR 568
            HDP + S  ++G   LL+
Sbjct: 318 HHDPMKMSLDKSGGSDLLK 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,819,744
Number of Sequences: 219361
Number of extensions: 1610438
Number of successful extensions: 6270
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 5829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6219
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)