ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40l07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) com... 44 0.17
2emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chr... 40 2.7
3gb|AC092213.4| Homo sapiens BAC clone RP11-190I6 from 7, complet... 40 2.7
4gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete ... 40 2.7
5gb|AC151822.29| Medicago truncatula clone mth2-32h21, complete s... 40 2.7
6gb|AY090542.1| Deschampsia antarctica clone Dacor 1.7 alanine am... 40 2.7

>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3
          Length = 315079

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 57     ttttctaccagcaattgaagttgatt 82
              ||||||||||| ||||||||||||||
Sbjct: 147395 ttttctaccaggaattgaagttgatt 147420



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>emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chromosome 7, complete
              sequence
          Length = 185507

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      gctgtgaagagagaataaaa 22
              ||||||||||||||||||||
Sbjct: 100445 gctgtgaagagagaataaaa 100464



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>gb|AC092213.4| Homo sapiens BAC clone RP11-190I6 from 7, complete sequence
          Length = 137237

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    aatttactactacataatat 191
              ||||||||||||||||||||
Sbjct: 102048 aatttactactacataatat 102067



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>gb|AC007270.2| Homo sapiens BAC clone GS1-77A9 from 7, complete sequence
          Length = 182958

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    aatttactactacataatat 191
              ||||||||||||||||||||
Sbjct: 108126 aatttactactacataatat 108107



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>gb|AC151822.29| Medicago truncatula clone mth2-32h21, complete sequence
          Length = 118094

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aactatggtgaagaaaactg 119
             ||||||||||||||||||||
Sbjct: 51320 aactatggtgaagaaaactg 51301



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>gb|AY090542.1| Deschampsia antarctica clone Dacor 1.7 alanine aminotransferase
           mRNA, 3' UTR and partial cds
          Length = 583

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 43  atataatgctgctcttttctaccagcaattgaagtt 78
           ||||||||||| | ||||||| |||||||| |||||
Sbjct: 476 atataatgctgttattttctagcagcaattaaagtt 511


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,223,490
Number of Sequences: 3902068
Number of extensions: 2223490
Number of successful extensions: 160286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160270
Number of HSP's gapped (non-prelim): 16
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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