| Clone Name | baal41a05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK112133.1| Ciona intestinalis cDNA, clone:cicl016b17, full insert sequence Length = 2274 Score = 379 bits (191), Expect = e-102 Identities = 215/221 (97%), Gaps = 2/221 (0%) Strand = Plus / Plus Query: 137 cttaagcttactatagtagattctgngggctttggtgatcaaattaacaaagaagaaagt 196 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 15 cttaagcttactatagtagattctgtgggctttggtgatcaaattaacaaagaagaaagt 74 Query: 197 ttcaagcctgttgttgagtatatcaaccagcaatttgaaaantacctacaggaagagcta 256 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 75 ttcaagcctgttgttgagtatatcaaccagcagtttgaaaattacctacaggaagagcta 134 Query: 257 aaaatttgcaggtcactgttcagttatcatgacacaagaattcatgctttgtctctattt 316 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 135 aaaatttgcaggtcactgttcagttatcatgacacaagaattcatgc-ttgtctctattt 193 Query: 317 catttcaccaactggacatgggccccaaatctttggatctc 357 ||||||||||||||||||| |||| |||||||||||||||| Sbjct: 194 catttcaccaactggacat-ggcctcaaatctttggatctc 233
>ref|XM_392412.2| PREDICTED: Apis mellifera similar to GA18006-PA (LOC408882), mRNA Length = 2140 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Plus Query: 173 gatcaaattaacaaagaagaaagtttcaagcctgttgttga 213 |||||||||||||||||||| ||||| || |||||||||| Sbjct: 326 gatcaaattaacaaagaagatagttttaaagctgttgttga 366
>gb|BC100044.1| Danio rerio wu:fb22a03, mRNA (cDNA clone IMAGE:7282994), partial cds Length = 1985 Score = 48.1 bits (24), Expect = 0.019 Identities = 80/99 (80%) Strand = Plus / Plus Query: 163 gggctttggtgatcaaattaacaaagaagaaagtttcaagcctgttgttgagtatatcaa 222 ||||||||| || ||||| |||||||||||||| | || || |||| || |||||| | Sbjct: 377 gggctttggggaccaaatcaacaaagaagaaagctataaacccattgtggactatatcga 436 Query: 223 ccagcaatttgaaaantacctacaggaagagctaaaaat 261 | || |||||||| ||||| ||||||||||| ||||| Sbjct: 437 cacacagtttgaaaactacctgcaggaagagctgaaaat 475
>gb|BC055257.1| Danio rerio wu:fb22a03, mRNA (cDNA clone IMAGE:3816536), partial cds Length = 2062 Score = 48.1 bits (24), Expect = 0.019 Identities = 80/99 (80%) Strand = Plus / Plus Query: 163 gggctttggtgatcaaattaacaaagaagaaagtttcaagcctgttgttgagtatatcaa 222 ||||||||| || ||||| |||||||||||||| | || || |||| || |||||| | Sbjct: 411 gggctttggggaccaaatcaacaaagaagaaagctataaacccattgtggactatatcga 470 Query: 223 ccagcaatttgaaaantacctacaggaagagctaaaaat 261 | || |||||||| ||||| ||||||||||| ||||| Sbjct: 471 cacacagtttgaaaactacctgcaggaagagctgaaaat 509
>ref|XM_682547.1| PREDICTED: Danio rerio wu:fb22a03 (wu:fb22a03), mRNA Length = 1599 Score = 48.1 bits (24), Expect = 0.019 Identities = 80/99 (80%) Strand = Plus / Plus Query: 163 gggctttggtgatcaaattaacaaagaagaaagtttcaagcctgttgttgagtatatcaa 222 ||||||||| || ||||| |||||||||||||| | || || |||| || |||||| | Sbjct: 483 gggctttggggaccaaatcaacaaagaagaaagctataaacccattgtggactatatcga 542 Query: 223 ccagcaatttgaaaantacctacaggaagagctaaaaat 261 | || |||||||| ||||| ||||||||||| ||||| Sbjct: 543 cacacagtttgaaaactacctgcaggaagagctgaaaat 581
>emb|BX901966.21| Zebrafish DNA sequence from clone DKEY-119B16 in linkage group 14, complete sequence Length = 145325 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Plus Query: 167 tttggtgatcaaattaacaaagaagaaagttt 198 |||||||| ||||| ||||||||||||||||| Sbjct: 56368 tttggtgaacaaatcaacaaagaagaaagttt 56399
>ref|XM_420591.1| PREDICTED: Gallus gallus similar to septin 11 (LOC422635), mRNA Length = 2500 Score = 46.1 bits (23), Expect = 0.077 Identities = 54/63 (85%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 272 ctgttcagttatcatgacacaagaattcatgctttgtctctatttcatttcaccaactgg 331 ||||||| ||| || ||||| ||||||||||| | | || ||||||||| |||||||||| Sbjct: 1021 ctgttcaattaccacgacaccagaattcatgcct-gcctgtatttcattgcaccaactgg 1079 Query: 332 aca 334 ||| Sbjct: 1080 aca 1082
>emb|BX930915.2| Gallus gallus finished cDNA, clone ChEST964e9 Length = 823 Score = 46.1 bits (23), Expect = 0.077 Identities = 54/63 (85%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 272 ctgttcagttatcatgacacaagaattcatgctttgtctctatttcatttcaccaactgg 331 ||||||| ||| || ||||| ||||||||||| | | || ||||||||| |||||||||| Sbjct: 314 ctgttcaattaccacgacaccagaattcatgcct-gcctgtatttcattgcaccaactgg 372 Query: 332 aca 334 ||| Sbjct: 373 aca 375
>gb|BC081662.1| Danio rerio wu:fb22a03, mRNA (cDNA clone IMAGE:7047588), partial cds Length = 2004 Score = 44.1 bits (22), Expect = 0.30 Identities = 75/93 (80%) Strand = Plus / Plus Query: 163 gggctttggtgatcaaattaacaaagaagaaagtttcaagcctgttgttgagtatatcaa 222 ||||||||| || ||||| |||||||||||||| | || || |||| || |||||| | Sbjct: 382 gggctttggggaccaaatcaacaaagaagaaagctataaacccattgtggactatatcga 441 Query: 223 ccagcaatttgaaaantacctacaggaagagct 255 | || |||||||| ||||| ||||||||||| Sbjct: 442 cacacagtttgaaaactacctgcaggaagagct 474
>ref|XM_968433.1| PREDICTED: Tribolium castaneum similar to CG9663-PA (LOC662332), mRNA Length = 1968 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 ggtaaatcaacccttatgaata 34 |||||||||||||||||||||| Sbjct: 271 ggtaaatcaacccttatgaata 292
>gb|BC073250.1| Xenopus laevis hypothetical protein LOC443634, mRNA (cDNA clone IMAGE:5505926), partial cds Length = 1185 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 179 attaacaaagaagaaagtttcaagcctgttgttgagt 215 |||||||||||||| |||| ||| ||| ||||||||| Sbjct: 518 attaacaaagaagacagttacaaacctattgttgagt 554
>gb|AY425123.1| Ochna sp. Davis 31-01 PHYC (PHYC) gene, partial cds Length = 1177 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 tttggtgatcaaattaacaaagaag 191 ||||||| ||||||||||||||||| Sbjct: 628 tttggtgttcaaattaacaaagaag 652
>gb|AY425122.1| Ochna multiflora PHYC (PHYC) gene, partial cds Length = 1177 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 tttggtgatcaaattaacaaagaag 191 ||||||| ||||||||||||||||| Sbjct: 628 tttggtgttcaaattaacaaagaag 652
>gb|AC121853.3| Mus musculus BAC clone RP24-96P15 from chromosome 17, complete sequence Length = 144510 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 ttaaactaaaggcaaatacat 109 ||||||||||||||||||||| Sbjct: 70591 ttaaactaaaggcaaatacat 70571
>gb|AC121869.2| Mus musculus BAC clone RP24-121C10 from 17, complete sequence Length = 182237 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 ttaaactaaaggcaaatacat 109 ||||||||||||||||||||| Sbjct: 147210 ttaaactaaaggcaaatacat 147230
>gb|BC097541.1| Xenopus laevis hypothetical protein LOC443634, mRNA (cDNA clone MGC:114670 IMAGE:5515183), complete cds Length = 1809 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 179 attaacaaagaagaaagtttcaagcctgttgttgagt 215 |||||||||||||| |||| ||| ||| ||||||||| Sbjct: 330 attaacaaagaagacagttacaaacctattgttgagt 366
>ref|XM_682088.1| PREDICTED: Danio rerio similar to Wu:fb22a03 protein (LOC558821), mRNA Length = 839 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 163 gggctttggtgatcaaattaacaaagaagaaag 195 ||||||||| || ||||| |||||||||||||| Sbjct: 423 gggctttggggaccaaatcaacaaagaagaaag 455
>emb|AL954767.11| Zebrafish DNA sequence from clone CH211-225B14 in linkage group 21, complete sequence Length = 182923 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 163 gggctttggtgatcaaattaacaaagaagaaag 195 ||||||||| || ||||| |||||||||||||| Sbjct: 85942 gggctttggggaccaaatcaacaaagaagaaag 85910 Score = 42.1 bits (21), Expect = 1.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 230 tttgaaaantacctacaggaagagctaaaaat 261 |||||||| ||||| ||||||||||| ||||| Sbjct: 82993 tttgaaaactacctgcaggaagagctgaaaat 82962
>gb|AC165951.3| Mus musculus BAC clone RP24-137B13 from chromosome 17, complete sequence Length = 209191 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 78 catgccaggtgttaaactaaaggcaaata 106 ||||||||||| |||| |||||||||||| Sbjct: 145024 catgccaggtggtaaattaaaggcaaata 144996
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03, complete sequence Length = 121466 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 aaattaacaaagaagaaagtttca 200 ||||||||||| |||||||||||| Sbjct: 35109 aaattaacaaaaaagaaagtttca 35086
>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence Length = 244220 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgctttgtctctatttcatt 320 |||||||||||||||||||| Sbjct: 87379 tgctttgtctctatttcatt 87398
>gb|AY814469.1| Schistosoma japonicum SJCHGC01523 protein mRNA, complete cds Length = 1509 Score = 40.1 bits (20), Expect = 4.7 Identities = 45/52 (86%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 283 tcatgacacaagaattcatgctttgtctctatttcatttcaccaactggaca 334 ||||||||||||| ||||||| ||| || ||||||||| |||| || ||||| Sbjct: 436 tcatgacacaagagttcatgc-ttgcctttatttcattgcacccaccggaca 486
>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence Length = 173357 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 tgctttgtctctatttcatt 320 |||||||||||||||||||| Sbjct: 166201 tgctttgtctctatttcatt 166182
>gb|AC133009.2| Homo sapiens chromosome 3 clone RP11-20P3, complete sequence Length = 23373 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 167 tttggtgatcaaattaacaaagaagaaa 194 |||||| |||| |||||||||||||||| Sbjct: 15015 tttggttatcatattaacaaagaagaaa 15042
>ref|XM_785860.1| PREDICTED: Strongylocentrotus purpuratus similar to septin 6 (LOC586062), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 92 aactaaaggcaaatacatatgagctgca 119 |||| ||||| ||||||||||||||||| Sbjct: 306 aactcaaggctaatacatatgagctgca 333
>gb|AC025822.7| Homo sapiens chromosome 10 clone RP11-433J20, complete sequence Length = 220031 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tttgtctctatttcatttca 323 |||||||||||||||||||| Sbjct: 199498 tttgtctctatttcatttca 199517
>ref|NM_165578.1| Drosophila melanogaster Sep5 CG2916-RA, transcript variant A (Sep5), mRNA Length = 1750 Score = 40.1 bits (20), Expect = 4.7 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 97 aaggcaaatacatatgagctgcaaggaaagcaacgt 132 |||||||||||||| ||||||| |||| |||||||| Sbjct: 480 aaggcaaatacatacgagctgc-aggagagcaacgt 514
>ref|NM_143704.1| Drosophila melanogaster Sep5 CG2916-RB, transcript variant B (Sep5), mRNA Length = 1739 Score = 40.1 bits (20), Expect = 4.7 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 97 aaggcaaatacatatgagctgcaaggaaagcaacgt 132 |||||||||||||| ||||||| |||| |||||||| Sbjct: 469 aaggcaaatacatacgagctgc-aggagagcaacgt 503
>gb|AC020616.7| Mus musculus strain C57BL/6J clone RP23-3A24, complete sequence Length = 191243 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 atcaaattaacaaagaagaa 193 |||||||||||||||||||| Sbjct: 37155 atcaaattaacaaagaagaa 37174
>gb|AY051754.1| Drosophila melanogaster LD28935 full length cDNA Length = 1698 Score = 40.1 bits (20), Expect = 4.7 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 97 aaggcaaatacatatgagctgcaaggaaagcaacgt 132 |||||||||||||| ||||||| |||| |||||||| Sbjct: 476 aaggcaaatacatacgagctgc-aggagagcaacgt 510
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 aaattaacaaagaagaaagtttca 200 ||||||||||| |||||||||||| Sbjct: 24148871 aaattaacaaaaaagaaagtttca 24148848
>gb|AC007084.7|AC007084 Drosophila melanogaster, chromosome 2R, region 43F-44A, BAC clone BACR26A16, complete sequence Length = 139410 Score = 40.1 bits (20), Expect = 4.7 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 97 aaggcaaatacatatgagctgcaaggaaagcaacgt 132 |||||||||||||| ||||||| |||| |||||||| Sbjct: 19243 aaggcaaatacatacgagctgc-aggagagcaacgt 19277
>gb|AC103719.12| Homo sapiens chromosome 8, clone RP11-421P23, complete sequence Length = 167878 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 aaaaatttgcaggtcactgt 275 |||||||||||||||||||| Sbjct: 105047 aaaaatttgcaggtcactgt 105066
>gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195597 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 acatatgagctgcaaggaaa 125 |||||||||||||||||||| Sbjct: 119188 acatatgagctgcaaggaaa 119207
>gb|AY811389.1| Schistosoma japonicum clone SJCHGC01524 unknown mRNA Length = 746 Score = 40.1 bits (20), Expect = 4.7 Identities = 45/52 (86%), Gaps = 1/52 (1%) Strand = Plus / Plus Query: 283 tcatgacacaagaattcatgctttgtctctatttcatttcaccaactggaca 334 ||||||||||||| ||||||| ||| || ||||||||| |||| || ||||| Sbjct: 478 tcatgacacaagagttcatgc-ttgcctttatttcattgcacccaccggaca 528
>gb|AF167578.1|AF167578 Drosophila melanogaster Sep5 (sep5) mRNA, complete cds Length = 1706 Score = 40.1 bits (20), Expect = 4.7 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 97 aaggcaaatacatatgagctgcaaggaaagcaacgt 132 |||||||||||||| ||||||| |||| |||||||| Sbjct: 426 aaggcaaatacatacgagctgc-aggagagcaacgt 460
>gb|AE003839.4| Drosophila melanogaster chromosome 2R, section 11 of 73 of the complete sequence Length = 254177 Score = 40.1 bits (20), Expect = 4.7 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 97 aaggcaaatacatatgagctgcaaggaaagcaacgt 132 |||||||||||||| ||||||| |||| |||||||| Sbjct: 172945 aaggcaaatacatacgagctgc-aggagagcaacgt 172911
>gb|AC005448.1|AC005448 Drosophila melanogaster, chromosome 2R, region 44A2-44A3, P1 clone DS06886, complete sequence Length = 86889 Score = 40.1 bits (20), Expect = 4.7 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 97 aaggcaaatacatatgagctgcaaggaaagcaacgt 132 |||||||||||||| ||||||| |||| |||||||| Sbjct: 36119 aaggcaaatacatacgagctgc-aggagagcaacgt 36085
>gb|AC113317.8| Mus musculus chromosome 5, clone RP23-442G8, complete sequence Length = 193961 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 aacaaagaagaaagtttcaa 201 |||||||||||||||||||| Sbjct: 157829 aacaaagaagaaagtttcaa 157848
>emb|AL929421.7| Mouse DNA sequence from clone RP23-284N23 on chromosome 2, complete sequence Length = 102530 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 atcaaattaacaaagaagaa 193 |||||||||||||||||||| Sbjct: 67735 atcaaattaacaaagaagaa 67754
>emb|AJ239078.1|TPY239078 Tetrahymena pyriformis partial mRNA for guanylyl cyclase, isoform 3 (gc3 gene) Length = 198 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 aataccaattttgagaatga 62 |||||||||||||||||||| Sbjct: 138 aataccaattttgagaatga 119 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,626,421 Number of Sequences: 3902068 Number of extensions: 3626421 Number of successful extensions: 69450 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 69368 Number of HSP's gapped (non-prelim): 89 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)