>ACSA_NITEU (Q82SI5) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA|
           ligase) (Acyl-activating enzyme)
          Length = 655

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 253 DERTRHNCFMLFPRGLAITWSEDPKYWTWHPLKEGRPE 366
           D  T H+  +    G  ITW  +  +W WH L  G+P+
Sbjct: 215 DTATVHSVIVFRHTGTGITWQPERDHW-WHDLIAGQPD 251

>DAMX_ECOLI (P11557) Protein damX|
          Length = 428

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 161 SPGRMSPT*PRWKIRSPXGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKT 322
           +P R  P  P    ++P  +S P  + +   T  P  TAS     A P+ GAKT
Sbjct: 282 TPKRTEPAAPVASTKAPAATSTPAPKETA--TTAPVQTASPAQTTATPAAGAKT 333

>SBCD_BORBU (O51769) Exonuclease sbcD homolog|
          Length = 413

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 139 PHMLREIVAGENVTDVAALEDQVTXGIFLAGKTKKY 246
           PH+   ++ G+N  ++  LEDQ +  +FL      Y
Sbjct: 135 PHINERLILGQNFDNIFGLEDQYSSKLFLENLENAY 170

>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +2

Query: 164  PGRMSPT*PRWKIRSPXGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 343
            PG + PT  + K+  P    +PG+Q   G    PG             PGA     G GT
Sbjct: 855  PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 902

Query: 344  P*KKEGRNR 370
            P K   R +
Sbjct: 903  PGKPGPRGQ 911

>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +2

Query: 164  PGRMSPT*PRWKIRSPXGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 343
            PG + PT  + K+  P    +PG+Q   G    PG             PGA     G GT
Sbjct: 857  PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 904

Query: 344  P*KKEGRNR 370
            P K   R +
Sbjct: 905  PGKPGPRGQ 913

>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +2

Query: 164  PGRMSPT*PRWKIRSPXGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGT 343
            PG + PT  + K+  P    +PG+Q   G    PG             PGA     G GT
Sbjct: 857  PGPLGPTGEKGKLGVPGLPGYPGRQGPKGSIGFPG------------FPGANGEKGGRGT 904

Query: 344  P*KKEGRNR 370
            P K   R +
Sbjct: 905  PGKPGPRGQ 913

>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 511

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 152 GRSSPGRMSP-T*PRWKIRSPXGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPS 328
           GR  PG     + PR   R+P  +  PG +   GWT GPG        EAW       P 
Sbjct: 149 GRGGPGAADGLSDPRR--RAPRTNRNPGDRPGAGWTDGPGAPHG----EAWRGSEQPDPP 202

Query: 329 TG 334
            G
Sbjct: 203 GG 204

>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
 Frame = +2

Query: 164 PGRMSPT*PRWKIRSPXGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPG--AKTPSTGL 337
           PG   P  P   I  P G S PGK    G T  PG         A  +PG   +   TG 
Sbjct: 135 PGPRGPPGPPG-IPGPAGISVPGKPGQQGLTGAPGPRGFPGEKGAQGAPGVNGRKGETGY 193

Query: 338 GTP 346
           G+P
Sbjct: 194 GSP 196

>ICI_LUMTE (P83472) Chymotrypsin inhibitor precursor (LTCI)|
          Length = 86

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 83 LSAVGTTWPSAVGEEAEDASGR 18
          +SAV T+WP  VGE  E+A  +
Sbjct: 20 ISAVKTSWPELVGETLEEAKAQ 41

>RL25_STAS1 (Q49V10) 50S ribosomal protein L25 (General stress protein CTC)|
          Length = 220

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 98  EVEEALSAVGTTWPSAVGEEAEDASGRD 15
           E+E       T  P  VGEE ED SG D
Sbjct: 189 EIEAMEGEAATEEPEVVGEEKEDESGED 216

>ULK1_HUMAN (O75385) Serine/threonine-protein kinase ULK1 (EC 2.7.11.1)|
           (Unc-51-like kinase 1)
          Length = 1050

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 152 GRSSPGRMSPT*PRWKIRSP-XGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPS 328
           G  + G  SP+   + + SP  GS+ P   R+  ++ GP  +AS  +    P P ++ P+
Sbjct: 740 GARAGGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLVPGPCSEAPA 799

Query: 329 TGLGTP 346
             L  P
Sbjct: 800 PELPAP 805

>LRP2_RAT (P98158) Low-density lipoprotein receptor-related protein 2 precursor|
            (Megalin) (Glycoprotein 330) (gp330)
          Length = 4660

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
 Frame = +1

Query: 142  HMLREIVAGENVTDVAALE-DQVTXGIF----LAGKTKKYW---VDERTRHNCFMLFPRG 297
            H L  +V  ++V+ V AL+ D VT  +F    L GKT   +    D+R  H+  +     
Sbjct: 1457 HNLYSLV--QDVSFVVALDFDSVTGRVFWSDLLQGKTWSVFQNGTDKRVVHDSGLSVTEM 1514

Query: 298  LAITWSEDPKYWTWHPLK 351
            +A+ W     YWT + L+
Sbjct: 1515 IAVDWIGRNLYWTDYALE 1532

>CLIC6_RAT (Q811Q2) Chloride intracellular channel 6|
          Length = 612

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 108 QPGPVQEGAGSSHAPGDRRRGEC 176
           +PGP  E  G+S APG+    EC
Sbjct: 81  RPGPGTETPGTSGAPGEAEAAEC 103

>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle|
           protein) (Paired helical filament-tau) (PHF-tau)
          Length = 751

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 197 KIRSPXGSSWPGKQRSTGWTRGPGTTASCCSLEAWPSPGAKTPSTGLGTP*KKEGRN 367
           KI +P G++ PG++ ++  TR P  T          +P  KTP  G G P K   R+
Sbjct: 460 KIATPRGAATPGQKGTSNATRIPAKT----------TPSPKTP-PGSGEPPKSGERS 505

>ISPD_PSEAE (P57707) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 234

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +1

Query: 223 LAGKTKKYWVDERTRHNCFMLFP--RGLAITWSEDPKYW 333
           LAG+T    V ERT  +CF+  P  RGL +  +ED  YW
Sbjct: 33  LAGRT----VIERTL-DCFLEHPMLRGLVVCLAEDDPYW 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,664,966
Number of Sequences: 219361
Number of extensions: 933559
Number of successful extensions: 2750
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2749
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)