| Clone Name | baal40i22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence Length = 124895 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 497 gacacaccaataccactcctctcttt 522 |||||||||||||||||| ||||||| Sbjct: 22150 gacacaccaataccactcttctcttt 22125
>gb|AC145120.1| Solanum demissum chromosome 5 BAC PGEC446O19 genomic sequence, complete sequence Length = 122450 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 497 gacacaccaataccactcctctcttt 522 |||||||||||||||||| ||||||| Sbjct: 65180 gacacaccaataccactcttctcttt 65205
>gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194006 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 aggagaaggagtagcagctgctgctg 36 ||||||||||| |||||||||||||| Sbjct: 106830 aggagaaggaggagcagctgctgctg 106855
>ref|NM_139425.1| Drosophila melanogaster CG5691-RA (CG5691), mRNA Length = 3124 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Plus Query: 11 aggagaaggagtagcagctgctgctg 36 ||||||||||| |||||||||||||| Sbjct: 20 aggagaaggaggagcagctgctgctg 45
>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete sequence Length = 315108 Score = 44.1 bits (22), Expect = 0.46 Identities = 25/26 (96%) Strand = Plus / Minus Query: 11 aggagaaggagtagcagctgctgctg 36 ||||||||||| |||||||||||||| Sbjct: 125065 aggagaaggaggagcagctgctgctg 125040
>gb|AC023844.6| Homo sapiens chromosome 15, clone RP11-427O16, complete sequence Length = 188788 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 aggagtagcagctgctgctgt 37 ||||||||||||||||||||| Sbjct: 85945 aggagtagcagctgctgctgt 85965
>gb|AC021677.4|AC021677 Homo sapiens chromosome 15, clone RP11-62D2, complete sequence Length = 177762 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 aggagtagcagctgctgctgt 37 ||||||||||||||||||||| Sbjct: 73679 aggagtagcagctgctgctgt 73699
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 aacggcggcgcgcggtggccggagg 354 |||||||||| |||||||||||||| Sbjct: 13666883 aacggcggcgagcggtggccggagg 13666859
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 cggcggcgcgcggtggccgga 352 ||||||||||||||||||||| Sbjct: 20831 cggcggcgcgcggtggccgga 20811
>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09 Length = 156565 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 aacggcggcgcgcggtggccggagg 354 |||||||||| |||||||||||||| Sbjct: 74216 aacggcggcgagcggtggccggagg 74192
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 atggtggcctcgtcgggaaa 393 |||||||||||||||||||| Sbjct: 2660201 atggtggcctcgtcgggaaa 2660182
>ref|XM_473392.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcgcggtggccggaggaagc 358 |||||||||||||||||||| Sbjct: 287 gcgcggtggccggaggaagc 306
>gb|BC077858.1| Xenopus laevis striatin, calmodulin binding protein, mRNA (cDNA clone MGC:80575 IMAGE:5440248), complete cds Length = 4102 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 atgaacgctttggttggatg 452 |||||||||||||||||||| Sbjct: 2451 atgaacgctttggttggatg 2432
>gb|BC008073.2| Homo sapiens family with sequence similarity 38, member A, mRNA (cDNA clone IMAGE:3029644), complete cds Length = 1655 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 1362 gagaaggagtaggagctgctgctg 1385
>gb|BC016983.1| Homo sapiens family with sequence similarity 38, member A, mRNA (cDNA clone IMAGE:4186028), with apparent retained intron Length = 2904 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 2614 gagaaggagtaggagctgctgctg 2637
>ref|NM_014745.1| Homo sapiens family with sequence similarity 38, member A (FAM38A), mRNA Length = 6368 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 6099 gagaaggagtaggagctgctgctg 6122
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcgcggtggccggaggaagc 358 |||||||||||||||||||| Sbjct: 36571 gcgcggtggccggaggaagc 36552
>emb|AL008733.10|HS163G9 Human DNA sequence from clone RP1-163G9 on chromosome 1p36.2-36.3 Contains two novel genes, the 5' end of the PRDM16 gene for PR domain containing 16 and two CpG islands, complete sequence Length = 143291 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 aggtccctgcacgggcacca 221 |||||||||||||||||||| Sbjct: 15671 aggtccctgcacgggcacca 15652
>emb|BX530017.13| Zebrafish DNA sequence from clone CH211-242H13 in linkage group 6, complete sequence Length = 164713 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 aggatggacggagagaaaac 419 |||||||||||||||||||| Sbjct: 119409 aggatggacggagagaaaac 119390
>emb|CR608234.1| full-length cDNA clone CS0DC003YG24 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1343 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 1086 gagaaggagtaggagctgctgctg 1109
>dbj|AK092007.1| Homo sapiens cDNA FLJ34688 fis, clone MESAN2000711 Length = 2535 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 2264 gagaaggagtaggagctgctgctg 2287
>emb|CR605984.1| full-length cDNA clone CS0DL010YN05 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1651 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 1393 gagaaggagtaggagctgctgctg 1416
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gccggctgcgccatcaacggcggc 338 |||||| ||||||||||||||||| Sbjct: 2660540 gccggcggcgccatcaacggcggc 2660517
>dbj|D87071.1| Homo sapiens mRNA for KIAA0233 gene, complete cds Length = 6368 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 6099 gagaaggagtaggagctgctgctg 6122
>gb|AC097528.2| Homo sapiens BAC clone RP11-662G20 from 4, complete sequence Length = 170412 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 aaaatccatggaagtttcac 65 |||||||||||||||||||| Sbjct: 73625 aaaatccatggaagtttcac 73644
>gb|AC153625.2| Mus musculus 6 BAC RP23-277O13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 175711 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 10 gaggagaaggagtagcagctgctgctgt 37 |||||||||||| |||||| |||||||| Sbjct: 118410 gaggagaaggagaagcagcagctgctgt 118437
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcgcggtggccggaggaagc 358 |||||||||||||||||||| Sbjct: 27300643 gcgcggtggccggaggaagc 27300624
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 cggcggcgcgcggtggccggagga 355 |||||||| ||||||||||||||| Sbjct: 17296706 cggcggcgagcggtggccggagga 17296729 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gcggcgcgcggtggccggag 353 |||||||||||||||||||| Sbjct: 3968868 gcggcgcgcggtggccggag 3968887
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cggcggcgcgcggtggccgg 351 |||||||||||||||||||| Sbjct: 40764047 cggcggcgcgcggtggccgg 40764066
>gb|AC008096.3|AC008096 Drosophila melanogaster, chromosome 2R, region 56C-56D, BAC clone BACR21D20, complete sequence Length = 176813 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 tggcctcgtcgggaaataat 397 |||||||||||||||||||| Sbjct: 82857 tggcctcgtcgggaaataat 82838
>gb|AC138028.1| Homo sapiens chromosome 16 clone RP5-1142A6, complete sequence Length = 127698 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 63063 gagaaggagtaggagctgctgctg 63086
>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12 Length = 167881 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 cggcggcgcgcggtggccgg 351 |||||||||||||||||||| Sbjct: 66693 cggcggcgcgcggtggccgg 66712
>gb|AE003796.3| Drosophila melanogaster chromosome 2R, section 54 of 73 of the complete sequence Length = 277421 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 tggcctcgtcgggaaataat 397 |||||||||||||||||||| Sbjct: 184201 tggcctcgtcgggaaataat 184220
>gb|BC111689.1| Homo sapiens cDNA clone MGC:133024 IMAGE:40005472, complete cds Length = 3415 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gagaaggagtagcagctgctgctg 36 |||||||||||| ||||||||||| Sbjct: 226 gagaaggagtaggagctgctgctg 203
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 cggcggcgcgcggtggccggagga 355 |||||||| ||||||||||||||| Sbjct: 17251077 cggcggcgagcggtggccggagga 17251100 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gcggcgcgcggtggccggag 353 |||||||||||||||||||| Sbjct: 3968842 gcggcgcgcggtggccggag 3968861
>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03, complete sequence Length = 136656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gcgcggtggccggaggaagc 358 |||||||||||||||||||| Sbjct: 131732 gcgcggtggccggaggaagc 131713
>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 154826 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 cggcggcgcgcggtggccggagga 355 |||||||| ||||||||||||||| Sbjct: 106663 cggcggcgagcggtggccggagga 106640
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gcggcgcgcggtggccggag 353 |||||||||||||||||||| Sbjct: 5278 gcggcgcgcggtggccggag 5297
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gcggcgcgcggtggccggag 353 |||||||||||||||||||| Sbjct: 130844 gcggcgcgcggtggccggag 130863
>gb|M90692.1|TOMPAL5A Lycopersicon esculentum phenylalanine ammonia-lyase (PAL5) gene, complete cds Length = 3416 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 tatccatggacacaccaata 508 |||||||||||||||||||| Sbjct: 2226 tatccatggacacaccaata 2207 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,205,980 Number of Sequences: 3902068 Number of extensions: 4205980 Number of successful extensions: 77539 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77096 Number of HSP's gapped (non-prelim): 443 length of query: 533 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 510 effective length of database: 17,143,297,704 effective search space: 8743081829040 effective search space used: 8743081829040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)