ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40h10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E07, full insert sequence Length = 2082 Score = 442 bits (223), Expect = e-121 Identities = 386/439 (87%), Gaps = 1/439 (0%) Strand = Plus / Plus Query: 20 cattgttgtctctgcggtatgatggcgttcagccacaaacaaatgaggcaattgcgcatg 79 ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||| Sbjct: 333 cattgttgtctctgcgg-atgatggtgttcgtccacaaacaaatgaggcaattgcacatg 391 Query: 80 caaaggcagccagagtccctattgtaatagctataaataaggtagacaaggagggtgcta 139 |||||||||| ||||||||||||| ||||| ||||| ||| |||||||||| || |||| Sbjct: 392 caaaggcagctggagtccctattgtgatagccataaacaagatagacaaggaaggagcta 451 Query: 140 atccagaacgagtcatgcaagaactttcccagattggacttatgccagagatgtggggtg 199 || | ||||| |||||||||| |||||||| |||||||||||||||||| |||||||| Sbjct: 452 atgctgaacgggtcatgcaagggctttcccaaattggacttatgccagaggcgtggggtg 511 Query: 200 gtgacaccccgatggttcagataagtgctcttaagggagagaatgttgatgagctattag 259 |||| | ||| ||| ||||||||||||||||||| |||||| ||| ||||| ||||| | Sbjct: 512 gtgatatcccaatgattcagataagtgctcttaatggagagggtgtagatgaactattgg 571 Query: 260 agaccgtcatgcttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaa 319 |||| |||| |||||||||||| ||| ||||||||| || || |||||||||||||||| Sbjct: 572 agactatcattcttgttgctgagctgcaagaattaaaggccaatcctcatagaaatgcaa 631 Query: 320 agggtacggttattgaagcatgtcttgacaaggccagaggacctcttgccaccctagttg 379 ||||||| |||||||||||||| |||||||| || | |||| |||||||||||||||||| Sbjct: 632 agggtacagttattgaagcatgccttgacaaagctaaaggatctcttgccaccctagttg 691 Query: 380 tacagaatggaaccttgaataagggcgatattcttgtttgcggtgaagcttttggaaaga 439 |||||||||||||| | || ||||| |||||| |||| || ||||| ||||||||||||| Sbjct: 692 tacagaatggaaccctaaacaagggtgatattgttgtgtgtggtgaggcttttggaaaga 751 Query: 440 tccgtgcaatgtatgatga 458 ||||||||||||||||||| Sbjct: 752 tccgtgcaatgtatgatga 770
>gb|AY103661.1| Zea mays PCO126844 mRNA sequence Length = 1594 Score = 222 bits (112), Expect = 8e-55 Identities = 241/284 (84%) Strand = Plus / Plus Query: 181 atgccagagatgtggggtggtgacaccccgatggttcagataagtgctcttaagggagag 240 |||||||| |||||||||||||| ||||| ||||| ||||||||||||||| || || Sbjct: 10 atgccagaaatgtggggtggtgataccccaatggtcgagataagtgctcttactggggat 69 Query: 241 aatgttgatgagctattagagaccgtcatgcttgttgctgagttgctagaattaaaagcg 300 ||||||||||| || | || || |||||||||||||| ||||||| ||||||||| || Sbjct: 70 aatgttgatgaacttctggaaactgtcatgcttgttgcagagttgcaagaattaaaggca 129 Query: 301 aaccctcatagaaatgcaaagggtacggttattgaagcatgtcttgacaaggccagagga 360 || || ||||| ||||| ||||| || |||||||||||||| ||||||||||||| ||| Sbjct: 130 aatccacataggaatgcgaagggcactgttattgaagcatgccttgacaaggccaaaggg 189 Query: 361 cctcttgccaccctagttgtacagaatggaaccttgaataagggcgatattcttgtttgc 420 |||||||| ||| ||||||| |||||||||||| | || || | |||||| |||| || Sbjct: 190 cctcttgctaccttagttgttcagaatggaaccctaaacaaagctgatattattgtgtgt 249 Query: 421 ggtgaagcttttggaaagatccgtgcaatgtatgatgaccgtgg 464 |||||||||| |||||||||||||||| ||||||||||| |||| Sbjct: 250 ggtgaagcttatggaaagatccgtgcattgtatgatgactgtgg 293
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 165 bits (83), Expect = 2e-37 Identities = 134/151 (88%) Strand = Plus / Plus Query: 288 agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 347 ||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 72293 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 72352 Query: 348 caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 407 ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 72353 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 72412 Query: 408 tattcttgtttgcggtgaagcttttggaaag 438 |||| |||| || ||||| |||||||||||| Sbjct: 72413 tattgttgtgtgtggtgaggcttttggaaag 72443 Score = 117 bits (59), Expect = 4e-23 Identities = 93/103 (90%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 20 cattgttgtctctgcggtatgatggcgttcagccacaaacaaatgaggcaattgcgcatg 79 ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||| Sbjct: 71741 cattgttgtctctgcgg-atgatggtgttcgtccacaaacaaatgaggcaattgcacatg 71799 Query: 80 caaaggcagccagagtccctattgtaatagctataaataaggt 122 |||||||||| ||||||||||||| ||||| ||||| ||||| Sbjct: 71800 caaaggcagctggagtccctattgtgatagccataaacaaggt 71842 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 122 tagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagattggactta 181 |||||||||| || |||||| | ||||| ||||||||||| |||||||| |||||||||| Sbjct: 71929 tagacaaggaaggagctaatgctgaacgggtcatgcaagagctttcccaaattggactta 71988 Query: 182 tgccagagatgtggggtggtga 203 |||||||| |||||||||||| Sbjct: 71989 tgccagaggcgtggggtggtga 72010 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 216 tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 275 |||||||||||||||||| |||||| ||| ||||| ||||| ||||| |||| ||||| Sbjct: 72141 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 72200 Query: 276 tgctgag 282 ||||||| Sbjct: 72201 tgctgag 72207 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 437 agatccgtgcaatgtatgatga 458 |||||||||||||||||||||| Sbjct: 72572 agatccgtgcaatgtatgatga 72593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 165 bits (83), Expect = 2e-37 Identities = 134/151 (88%) Strand = Plus / Plus Query: 288 agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 347 ||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 28437369 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 28437428 Query: 348 caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 407 ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 28437429 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 28437488 Query: 408 tattcttgtttgcggtgaagcttttggaaag 438 |||| |||| || ||||| |||||||||||| Sbjct: 28437489 tattgttgtgtgtggtgaggcttttggaaag 28437519 Score = 117 bits (59), Expect = 4e-23 Identities = 93/103 (90%), Gaps = 1/103 (0%) Strand = Plus / Plus Query: 20 cattgttgtctctgcggtatgatggcgttcagccacaaacaaatgaggcaattgcgcatg 79 ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||| Sbjct: 28436817 cattgttgtctctgcgg-atgatggtgttcgtccacaaacaaatgaggcaattgcacatg 28436875 Query: 80 caaaggcagccagagtccctattgtaatagctataaataaggt 122 |||||||||| ||||||||||||| ||||| ||||| ||||| Sbjct: 28436876 caaaggcagctggagtccctattgtgatagccataaacaaggt 28436918 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 122 tagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagattggactta 181 |||||||||| || |||||| | ||||| ||||||||||| |||||||| |||||||||| Sbjct: 28437005 tagacaaggaaggagctaatgctgaacgggtcatgcaagagctttcccaaattggactta 28437064 Query: 182 tgccagagatgtggggtggtga 203 |||||||| |||||||||||| Sbjct: 28437065 tgccagaggcgtggggtggtga 28437086 Score = 61.9 bits (31), Expect = 2e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 216 tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 275 |||||||||||||||||| |||||| ||| ||||| ||||| ||||| |||| ||||| Sbjct: 28437217 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 28437276 Query: 276 tgctgag 282 ||||||| Sbjct: 28437277 tgctgag 28437283 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 437 agatccgtgcaatgtatgatga 458 |||||||||||||||||||||| Sbjct: 28437648 agatccgtgcaatgtatgatga 28437669
>gb|AF324244.1|AF324244 Phaseolus vulgaris translation initiation factor 2 (IF2) gene, complete cds; nuclear gene for chloroplast product Length = 4499 Score = 115 bits (58), Expect = 1e-22 Identities = 219/270 (81%), Gaps = 2/270 (0%) Strand = Plus / Plus Query: 55 caaacaaatgaggcaattgcgcatgcaaaggcagccagagtccctattgtaatagctata 114 ||||||||||| || ||||| ||||| || ||||| |||| || || || || |||||| Sbjct: 1929 caaacaaatgaagctattgctcatgccaaagcagcgggagtacccatagtcattgctata 1988 Query: 115 aataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagatt 174 || ||| |||| || || || || |||||||||||||||||||| || ||||| ||| Sbjct: 1989 aacaagatagataaagatggagcaaatccagaacgagtcatgcaggagctttcttcaatt 2048 Query: 175 ggacttatgccaga-gatgtggggtggtgacaccccgatggttcagataagtgctcttaa 233 || | |||||||| ||| |||||||| ||||||| ||||||| ||||||||||||||| Sbjct: 2049 ggtttaatgccagaagat-tggggtggcaacaccccaatggttccgataagtgctcttaa 2107 Query: 234 gggagagaatgttgatgagctattagagaccgtcatgcttgttgctgagttgctagaatt 293 || ||||||| ||||| || ||||| || || ||||||||||||||||||| ||| | Sbjct: 2108 agggaagaatgtggatgatctcttagaaactgttatgcttgttgctgagttgcaagagct 2167 Query: 294 aaaagcgaaccctcatagaaatgcaaaggg 323 ||||| || ||| |||||| ||||||||| Sbjct: 2168 gaaagctaatcctgatagaagtgcaaaggg 2197
>ref|NM_101583.2| Arabidopsis thaliana GTP binding / translation initiation factor AT1G17220 mRNA, complete cds Length = 3633 Score = 44.1 bits (22), Expect = 0.42 Identities = 52/62 (83%) Strand = Plus / Plus Query: 106 atagctataaataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactt 165 ||||||||||||||| |||| || || || |||| |||||| |||| |||||||| ||| Sbjct: 2125 atagctataaataagatagataaagaaggagctagtccagatagagtgatgcaagagctt 2184 Query: 166 tc 167 || Sbjct: 2185 tc 2186 Score = 42.1 bits (21), Expect = 1.7 Identities = 90/113 (79%) Strand = Plus / Plus Query: 211 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 270 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 2230 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2289 Query: 271 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 323 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 2290 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2342
>gb|BT001007.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds Length = 3081 Score = 44.1 bits (22), Expect = 0.42 Identities = 52/62 (83%) Strand = Plus / Plus Query: 106 atagctataaataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactt 165 ||||||||||||||| |||| || || || |||| |||||| |||| |||||||| ||| Sbjct: 1825 atagctataaataagatagataaagaaggagctagtccagatagagtgatgcaagagctt 1884 Query: 166 tc 167 || Sbjct: 1885 tc 1886 Score = 42.1 bits (21), Expect = 1.7 Identities = 90/113 (79%) Strand = Plus / Plus Query: 211 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 270 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 1930 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 1989 Query: 271 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 323 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 1990 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2042
>gb|AF367343.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds Length = 3631 Score = 44.1 bits (22), Expect = 0.42 Identities = 52/62 (83%) Strand = Plus / Plus Query: 106 atagctataaataaggtagacaaggagggtgctaatccagaacgagtcatgcaagaactt 165 ||||||||||||||| |||| || || || |||| |||||| |||| |||||||| ||| Sbjct: 2124 atagctataaataagatagataaagaaggagctagtccagatagagtgatgcaagagctt 2183 Query: 166 tc 167 || Sbjct: 2184 tc 2185 Score = 42.1 bits (21), Expect = 1.7 Identities = 90/113 (79%) Strand = Plus / Plus Query: 211 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 270 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 2229 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2288 Query: 271 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 323 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 2289 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2341
>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete sequence Length = 176947 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 309 tagaaatgcaaagggtacggttatt 333 |||||||||||||| |||||||||| Sbjct: 102571 tagaaatgcaaaggatacggttatt 102595
>dbj|AB206848.1| Prunus persica DNA, microsatellite marker MA053a Length = 530 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 103 gtaatagctataaataaggta 123 ||||||||||||||||||||| Sbjct: 69 gtaatagctataaataaggta 49
>gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome 3, complete sequence Length = 203159 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tgcaaaggcagccagagtcc 97 |||||||||||||||||||| Sbjct: 129290 tgcaaaggcagccagagtcc 129309
>gb|AC124751.4| Mus musculus BAC clone RP23-274P18 from chromosome 13, complete sequence Length = 160979 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 ggttattgaagcatgtcttgacaa 350 ||||||| |||||||||||||||| Sbjct: 63376 ggttatttaagcatgtcttgacaa 63399
>gb|AC116051.4| Mus musculus BAC clone RP23-4L11 from 3, complete sequence Length = 224674 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tgcaaaggcagccagagtcc 97 |||||||||||||||||||| Sbjct: 38937 tgcaaaggcagccagagtcc 38956
>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175262 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cagaatggaaccttgaataa 401 |||||||||||||||||||| Sbjct: 55109 cagaatggaaccttgaataa 55128
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cagaatggaaccttgaataa 401 |||||||||||||||||||| Sbjct: 262912 cagaatggaaccttgaataa 262931
>emb|AL030994.1|DMC4F1 Drosophila melanogaster cosmid clone 4F1 Length = 44352 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 cagaatggaaccttgaataa 401 |||||||||||||||||||| Sbjct: 4566 cagaatggaaccttgaataa 4585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,924,233 Number of Sequences: 3902068 Number of extensions: 3924233 Number of successful extensions: 66500 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66438 Number of HSP's gapped (non-prelim): 58 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
