ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 285 6e-74
2dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic D... 285 6e-74
3dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic D... 285 6e-74
4dbj|AK069334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 6e-74
5dbj|AK068184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 285 6e-74
6ref|NM_192618.1| Oryza sativa (japonica cultivar-group), predic... 281 1e-72
7gb|AY108934.1| Zea mays PCO145446 mRNA sequence 230 3e-57
8dbj|AP006089.1| Lotus japonicus genomic DNA, chromosome 2, clone... 48 0.025
9gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 at... 42 1.6
10ref|XM_954355.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
11ref|XM_328846.1| Neurospora crassa OR74A hypothetical protein (N... 42 1.6
12gb|AF068865.1| Mus musculus Delta-like 3 (Dll3) gene, alternativ... 40 6.2
13gb|AC160765.4| Mus musculus BAC clone RP23-26O24 from chromosome... 40 6.2
14gb|AC005409.1| Homo sapiens chromosome 12 clone 14951, complete ... 40 6.2
15ref|NM_007866.1| Mus musculus delta-like 3 (Drosophila) (Dll3), ... 40 6.2
16ref|XM_544683.2| PREDICTED: Canis familiaris similar to Hepatocy... 40 6.2
17ref|XM_846134.1| PREDICTED: Canis familiaris similar to Hepatocy... 40 6.2
18emb|AL022717.2|HS201D7 Human DNA sequence from clone RP1-201D7 o... 40 6.2
19emb|Y11895.1|MMMDELTA3 M.musculus mRNA for M-Delta-like 3 gene 40 6.2
20gb|AC063950.37| Homo sapiens 12 BAC RP11-511H9 (Roswell Park Can... 40 6.2
21dbj|AK144282.1| Mus musculus 11 days embryo spinal cord cDNA, RI... 40 6.2
22gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, co... 40 6.2
23gb|BC052002.1| Mus musculus delta-like 3 (Drosophila), transcrip... 40 6.2
24gb|AC148986.5| Mus musculus BAC clone RP23-89A16 from chromosome... 40 6.2
25gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.2
26emb|X98518.1|SPXYL1 Streptomyces sp. S38 xyl1 gene for endo-1,4-... 40 6.2
27gb|AC002327.1|AC002327 Mus musculus chromosome 7, clone 19K5, co... 40 6.2
28dbj|AB013440.1| Mus musculus mRNA for Dll3 protein, complete cds 40 6.2 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  285 bits (144), Expect = 6e-74
 Identities = 168/176 (95%)
 Strand = Plus / Plus

                                                                            
Query: 45       cgcatctccggtctcagcggcatccgcgtcagggccttcttccgctggtggtccatcacc 104
                ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 23329514 cgcatctccggcctcagcggcatccgcgtcagggccttcttccggtggtggtccatcacc 23329573

                                                                            
Query: 105      gggatccgcgccgatggagacgagctcgtcttcgaggtgggctccgtctccgccaagttc 164
                |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 23329574 gggatccgcgccgacggcgacgagctcgtcttcgaggtcggctccgtctccgccaagttc 23329633

                                                                        
Query: 165      cccgcgcgccacttcaacgccagcctcgaatgccccgccaaggccgactcttagta 220
                ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 23329634 cccgcccgccacttcaacgccagcctcgagtgccccgccaaagccgactcttagta 23329689
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>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1103C09
          Length = 163996

 Score =  285 bits (144), Expect = 6e-74
 Identities = 168/176 (95%)
 Strand = Plus / Plus

                                                                         
Query: 45    cgcatctccggtctcagcggcatccgcgtcagggccttcttccgctggtggtccatcacc 104
             ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 55212 cgcatctccggcctcagcggcatccgcgtcagggccttcttccggtggtggtccatcacc 55271

                                                                         
Query: 105   gggatccgcgccgatggagacgagctcgtcttcgaggtgggctccgtctccgccaagttc 164
             |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 55272 gggatccgcgccgacggcgacgagctcgtcttcgaggtcggctccgtctccgccaagttc 55331

                                                                     
Query: 165   cccgcgcgccacttcaacgccagcctcgaatgccccgccaaggccgactcttagta 220
             ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 55332 cccgcccgccacttcaacgccagcctcgagtgccccgccaaagccgactcttagta 55387
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>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0451D05
          Length = 148381

 Score =  285 bits (144), Expect = 6e-74
 Identities = 168/176 (95%)
 Strand = Plus / Plus

                                                                          
Query: 45     cgcatctccggtctcagcggcatccgcgtcagggccttcttccgctggtggtccatcacc 104
              ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 116256 cgcatctccggcctcagcggcatccgcgtcagggccttcttccggtggtggtccatcacc 116315

                                                                          
Query: 105    gggatccgcgccgatggagacgagctcgtcttcgaggtgggctccgtctccgccaagttc 164
              |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 116316 gggatccgcgccgacggcgacgagctcgtcttcgaggtcggctccgtctccgccaagttc 116375

                                                                      
Query: 165    cccgcgcgccacttcaacgccagcctcgaatgccccgccaaggccgactcttagta 220
              ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 116376 cccgcccgccacttcaacgccagcctcgagtgccccgccaaagccgactcttagta 116431
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>dbj|AK069334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010O20, full
           insert sequence
          Length = 779

 Score =  285 bits (144), Expect = 6e-74
 Identities = 168/176 (95%)
 Strand = Plus / Plus

                                                                       
Query: 45  cgcatctccggtctcagcggcatccgcgtcagggccttcttccgctggtggtccatcacc 104
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cgcatctccggcctcagcggcatccgcgtcagggccttcttccggtggtggtccatcacc 440

                                                                       
Query: 105 gggatccgcgccgatggagacgagctcgtcttcgaggtgggctccgtctccgccaagttc 164
           |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gggatccgcgccgacggcgacgagctcgtcttcgaggtcggctccgtctccgccaagttc 500

                                                                   
Query: 165 cccgcgcgccacttcaacgccagcctcgaatgccccgccaaggccgactcttagta 220
           ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 501 cccgcccgccacttcaacgccagcctcgagtgccccgccaaagccgactcttagta 556
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>dbj|AK068184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013133H08, full
           insert sequence
          Length = 887

 Score =  285 bits (144), Expect = 6e-74
 Identities = 168/176 (95%)
 Strand = Plus / Plus

                                                                       
Query: 45  cgcatctccggtctcagcggcatccgcgtcagggccttcttccgctggtggtccatcacc 104
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 cgcatctccggcctcagcggcatccgcgtcagggccttcttccggtggtggtccatcacc 440

                                                                       
Query: 105 gggatccgcgccgatggagacgagctcgtcttcgaggtgggctccgtctccgccaagttc 164
           |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 gggatccgcgccgacggcgacgagctcgtcttcgaggtcggctccgtctccgccaagttc 500

                                                                   
Query: 165 cccgcgcgccacttcaacgccagcctcgaatgccccgccaaggccgactcttagta 220
           ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 501 cccgcccgccacttcaacgccagcctcgagtgccccgccaaagccgactcttagta 556
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>ref|NM_192618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 483

 Score =  281 bits (142), Expect = 1e-72
 Identities = 166/174 (95%)
 Strand = Plus / Plus

                                                                       
Query: 45  cgcatctccggtctcagcggcatccgcgtcagggccttcttccgctggtggtccatcacc 104
           ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 310 cgcatctccggcctcagcggcatccgcgtcagggccttcttccggtggtggtccatcacc 369

                                                                       
Query: 105 gggatccgcgccgatggagacgagctcgtcttcgaggtgggctccgtctccgccaagttc 164
           |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 370 gggatccgcgccgacggcgacgagctcgtcttcgaggtcggctccgtctccgccaagttc 429

                                                                 
Query: 165 cccgcgcgccacttcaacgccagcctcgaatgccccgccaaggccgactcttag 218
           ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 430 cccgcccgccacttcaacgccagcctcgagtgccccgccaaagccgactcttag 483
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>gb|AY108934.1| Zea mays PCO145446 mRNA sequence
          Length = 867

 Score =  230 bits (116), Expect = 3e-57
 Identities = 152/164 (92%)
 Strand = Plus / Plus

                                                                       
Query: 45  cgcatctccggtctcagcggcatccgcgtcagggccttcttccgctggtggtccatcacc 104
           |||||||| || |||  |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 383 cgcatctcgggcctcgacggcatccgcgtcagggccttcttccgctggtggtccatcacg 442

                                                                       
Query: 105 gggatccgcgccgatggagacgagctcgtcttcgaggtgggctccgtctccgccaagttc 164
           ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 443 gggatccgcgccgatggggaccagctcgtcttcgaggtcggctccgtctccgccaagttc 502

                                                       
Query: 165 cccgcgcgccacttcaacgccagcctcgaatgccccgccaaggc 208
           ||||||||  ||||||||||||||||||| ||||||||| ||||
Sbjct: 503 cccgcgcgggacttcaacgccagcctcgactgccccgcccaggc 546
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>dbj|AP006089.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT28L17, TM0153b,
             complete sequence
          Length = 92148

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 78    gccttcttccgctggtggtccatcaccgggat 109
             ||||||||||  ||||||||||||||||||||
Sbjct: 56427 gccttcttccagtggtggtccatcaccgggat 56458
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>gb|AY456696.1| Arthrobacter aurescens strain TC1 plasmid pAA1 atrazine catabolic
             region, partial sequence
          Length = 161264

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 271   tcgacgtggatccccatgatc 291
             |||||||||||||||||||||
Sbjct: 72537 tcgacgtggatccccatgatc 72557
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>ref|XM_954355.1| Neurospora crassa OR74A hypothetical protein (NCU08141.1) partial
           mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 266 tcgcctcgacgtggatcccca 286
           |||||||||||||||||||||
Sbjct: 660 tcgcctcgacgtggatcccca 640
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>ref|XM_328846.1| Neurospora crassa OR74A hypothetical protein (NCU08141.1) partial
           mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 266 tcgcctcgacgtggatcccca 286
           |||||||||||||||||||||
Sbjct: 660 tcgcctcgacgtggatcccca 640
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>gb|AF068865.1| Mus musculus Delta-like 3 (Dll3) gene, alternative splice products,
            exons 1 through 17 and complete cds
          Length = 20000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  taaaggttcttattttgctc 418
            ||||||||||||||||||||
Sbjct: 9908 taaaggttcttattttgctc 9927
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>gb|AC160765.4| Mus musculus BAC clone RP23-26O24 from chromosome 13, complete sequence
          Length = 234761

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    aatgtaaaggttcttatttt 414
              ||||||||||||||||||||
Sbjct: 184435 aatgtaaaggttcttatttt 184416
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>gb|AC005409.1| Homo sapiens chromosome 12 clone 14951, complete sequence
          Length = 177364

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   aaggttcttattttgctctt 420
             ||||||||||||||||||||
Sbjct: 86031 aaggttcttattttgctctt 86050
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>ref|NM_007866.1| Mus musculus delta-like 3 (Drosophila) (Dll3), mRNA
          Length = 2242

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  taaaggttcttattttgctc 418
            ||||||||||||||||||||
Sbjct: 2083 taaaggttcttattttgctc 2102
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>ref|XM_544683.2| PREDICTED: Canis familiaris similar to Hepatocyte nuclear factor 6
           (HNF-6) (One cut domain family member 1), transcript
           variant 1 (LOC487558), mRNA
          Length = 1528

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  ctccggtctcagcggcatcc 69
           ||||||||||||||||||||
Sbjct: 552 ctccggtctcagcggcatcc 571
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>ref|XM_846134.1| PREDICTED: Canis familiaris similar to Hepatocyte nuclear factor 6
           (HNF-6) (One cut domain family member 1), transcript
           variant 2 (LOC487558), mRNA
          Length = 1594

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  ctccggtctcagcggcatcc 69
           ||||||||||||||||||||
Sbjct: 552 ctccggtctcagcggcatcc 571
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>emb|AL022717.2|HS201D7 Human DNA sequence from clone RP1-201D7 on chromosome 6p22.1-22.3
             Contains part of a novel gene (FLJ20342), complete
             sequence
          Length = 100733

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ctcttagtaacaaggaactc 231
             ||||||||||||||||||||
Sbjct: 59452 ctcttagtaacaaggaactc 59471
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>emb|Y11895.1|MMMDELTA3 M.musculus mRNA for M-Delta-like 3 gene
          Length = 2242

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  taaaggttcttattttgctc 418
            ||||||||||||||||||||
Sbjct: 2083 taaaggttcttattttgctc 2102
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>gb|AC063950.37| Homo sapiens 12 BAC RP11-511H9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 174231

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 401   aaggttcttattttgctctt 420
             ||||||||||||||||||||
Sbjct: 79702 aaggttcttattttgctctt 79721
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>dbj|AK144282.1| Mus musculus 11 days embryo spinal cord cDNA, RIKEN full-length
            enriched library, clone:G630007K20 product:delta-like 3
            (Drosophila), full insert sequence
          Length = 2002

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  taaaggttcttattttgctc 418
            ||||||||||||||||||||
Sbjct: 1983 taaaggttcttattttgctc 2002
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>gb|AC114648.25| Mus musculus chromosome 8, clone RP24-144H17, complete sequence
          Length = 171191

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 391   ggataatgtaaaggttcttatttt 414
             ||||||||||||||||||| ||||
Sbjct: 64913 ggataatgtaaaggttcttctttt 64936
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>gb|BC052002.1| Mus musculus delta-like 3 (Drosophila), transcript variant 1, mRNA
            (cDNA clone MGC:62323 IMAGE:6404029), complete cds
          Length = 2171

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  taaaggttcttattttgctc 418
            ||||||||||||||||||||
Sbjct: 1959 taaaggttcttattttgctc 1978
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>gb|AC148986.5| Mus musculus BAC clone RP23-89A16 from chromosome 7, complete sequence
          Length = 243039

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 399    taaaggttcttattttgctc 418
              ||||||||||||||||||||
Sbjct: 187042 taaaggttcttattttgctc 187023
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 12      cgaccacctcaccggccacc 31
               ||||||||||||||||||||
Sbjct: 1483055 cgaccacctcaccggccacc 1483036
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>emb|X98518.1|SPXYL1 Streptomyces sp. S38 xyl1 gene for endo-1,4-beta-xylanase
          Length = 1767

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 12   cgaccacctcaccggccacctcgt 35
            |||| |||||||||||||||||||
Sbjct: 1181 cgacgacctcaccggccacctcgt 1158
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>gb|AC002327.1|AC002327 Mus musculus chromosome 7, clone 19K5, complete sequence
          Length = 159515

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 399    taaaggttcttattttgctc 418
              ||||||||||||||||||||
Sbjct: 147209 taaaggttcttattttgctc 147228
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>dbj|AB013440.1| Mus musculus mRNA for Dll3 protein, complete cds
          Length = 1992

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  taaaggttcttattttgctc 418
            ||||||||||||||||||||
Sbjct: 1969 taaaggttcttattttgctc 1988


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,774,824
Number of Sequences: 3902068
Number of extensions: 2774824
Number of successful extensions: 51351
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51268
Number of HSP's gapped (non-prelim): 83
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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