>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor
          Length = 498

 Score =  617 bits (311), Expect = e-173
 Identities = 335/339 (98%), Gaps = 3/339 (0%)
 Strand = Plus / Plus

                                                                       
Query: 18  catcagcaaccatgnaagggcaccaagctcgcggcgattctgatcctccaggccgtcctg 77
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catcagcaaccatg-aagggcaccaagctcgcggcgattctgatcctccaggccgtcctg 59

                                                                       
Query: 78  gtcatgggagtcctctcgcacgtgaacgccgactatttccccacgtgctgcaacaactgc 137
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 60  gtcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgc 119

                                                                       
Query: 138 aggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgc 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 aggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgc 179

                                                                       
Query: 198 tcggcgtgccgcgtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagcc 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcggcgtgccgcgtggtgaccacgaacccccagacgttccgctgcgccgacatgaaagcc 239

                                                                       
Query: 258 accgtcgacggcacctgcggcgggccatgcaagaagtactgatcggctcaggctcacatg 317
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 240 accgtcgacggcacctgcggcgggccatgcaagaagtactgatc-gctcaggctcacatg 298

                                                  
Query: 318 agactattgttccgcttggcgcctaaaataaaagctcgg 356
           ||||||||||| |||||||||||||||||||||||||||
Sbjct: 299 agactattgtt-cgcttggcgcctaaaataaaagctcgg 336

>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score =  325 bits (164), Expect = 6e-86
 Identities = 260/290 (89%), Gaps = 4/290 (1%)
 Strand = Plus / Plus

                                                                       
Query: 15  gttcatcagcaaccatgnaagggcaccaagctcgcggcgattctgatcctccaggccgtc 74
           |||||||||||| |||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 73  gttcatcagcaagcatg-aagagcaccaagctcgcggcgatcctgatcctccaggccgtc 131

                                                                       
Query: 75  ctggtcatgggagtcctctcgcacgtgaacgccgactatttccccacgtgctgcaacaac 134
           |||||||||||  ||||||| ||||||||||||||||  ||||||| |||||||||||||
Sbjct: 132 ctggtcatggggatcctctcacacgtgaacgccgacttcttccccaagtgctgcaacaac 191

                                                                       
Query: 135 tgcaggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggc 194
           ||||||||||||||||||||||||||||||||||||||||| || ||||||||||  |||
Sbjct: 192 tgcaggtccttctccggggtcgacgtctgcgacgacgcccacccccagtgccccaagggc 251

                                                                       
Query: 195 tgctcggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatg 251
           |||||||| ||||||||||||||  | | |||   | |||||||||| ||||||||||||
Sbjct: 252 tgctcggcctgccgcgtggtgacgcccagccctcacaagacgttccggtgcgccgacatg 311

                                                             
Query: 252 aaagccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatc 301
           ||   ||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct: 312 aagagcaccgtcgatggcacctgcggcgggccatgcaaaaagcactgatc 361

>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA,
           complete cds
          Length = 520

 Score =  325 bits (164), Expect = 6e-86
 Identities = 258/288 (89%), Gaps = 1/288 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  ttcatcagcaaccatgnaagggcaccaagctcgcggcgattctgatcctccaggccgtcc 75
           |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 60  ttcatcagaaaccatg-aagggcaccaagctcgcggcgatcctgatcctccaggccgtcc 118

                                                                       
Query: 76  tggtcatgggagtcctctcgcacgtgaacgccgactatttccccacgtgctgcaacaact 135
           ||||||||||| ||||||| |||||||||||||| | |||||||| ||||||||||||||
Sbjct: 119 tggtcatgggactcctctcacacgtgaacgccgattttttccccaagtgctgcaacaact 178

                                                                       
Query: 136 gcaggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggct 195
           ||||||||||||| |||||||||||||||||||||||||| ||  |||| |||   ||||
Sbjct: 179 gcaggtccttctcgggggtcgacgtctgcgacgacgcccaccccaagtgtccccagggct 238

                                                                       
Query: 196 gctcggcgtgccgcgtggtgaccacgaacccccagacgttccgctgcgccgacatgaaag 255
           |||||||||||||||||||| | |||| |||| | | ||  |||||||| || |||||| 
Sbjct: 239 gctcggcgtgccgcgtggtgtcgacgagccccgaaatgtggcgctgcgcggatatgaaat 298

                                                           
Query: 256 ccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatcgg 303
           |||||||||||||||||||||| || || |||||||||||||||||||
Sbjct: 299 ccaccgtcgacggcacctgcggtggaccctgcaagaagtactgatcgg 346

>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds
          Length = 585

 Score = 95.6 bits (48), Expect = 9e-17
 Identities = 110/130 (84%), Gaps = 3/130 (2%)
 Strand = Plus / Plus

                                                                       
Query: 44  gctcgcggcgattctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaa 103
           ||||| |||||| ||||| |||||||||||||||||||||||| ||||||| || | |||
Sbjct: 90  gctcgtggcgatcctgattctccaggccgtcctggtcatgggaatcctctcacaggcgaa 149

                                                                       
Query: 104 cgccgactatttccccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctg 163
           |||||   | ||||| |  |||||| |||||||||||| |||||| |||| ||  |||||
Sbjct: 150 cgccg---agttcccgaaatgctgcgacaactgcaggttcttctcgggggccgtggtctg 206

                     
Query: 164 cgacgacgcc 173
           ||||||||||
Sbjct: 207 cgacgacgcc 216

>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA,
           complete cds
          Length = 564

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 100/117 (85%), Gaps = 3/117 (2%)
 Strand = Plus / Plus

                                                                       
Query: 57  ctgatcctccaggccgtcctggtcatgggagtcctctcgcacgtgaacgccgactatttc 116
           |||||||| ||||||||||||||||||||| ||||||| || | ||||||||   | |||
Sbjct: 82  ctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccg---agttc 138

                                                                    
Query: 117 cccacgtgctgcaacaactgcaggtccttctccggggtcgacgtctgcgacgacgcc 173
           |||| ||||||| |||||||||||| |||||| |||| ||  |||||||| ||||||
Sbjct: 139 cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195

>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 61    tcctccaggccgtcctggtcatgggagtcctctc 94
             ||||||||||| |||||||||||||| |||||||
Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctc 71843



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 182   gtgccccaccggctgctcggcgtgccgc 209
             ||||||| ||||||||||||||||||||
Sbjct: 72072 gtgccccgccggctgctcggcgtgccgc 72099

>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 63 ctccaggccgtcctggtcatggg 85
          |||||||||||||||||||||||
Sbjct: 34 ctccaggccgtcctggtcatggg 56

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 63      ctccaggccgtcctggtcatggg 85
               |||||||||||||||||||||||
Sbjct: 1757697 ctccaggccgtcctggtcatggg 1757675

>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 46.1 bits (23), Expect = 0.077
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 63     ctccaggccgtcctggtcatggg 85
              |||||||||||||||||||||||
Sbjct: 100040 ctccaggccgtcctggtcatggg 100018

>gb|AY618464.1| Glomerella graminicola isolate 43 18S ribosomal RNA gene, partial
           sequence
          Length = 518

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 137 caggtccttctccggggtcga 157
           |||||||||||||||||||||
Sbjct: 156 caggtccttctccggggtcga 176

>emb|Z94139.1| Plectosphaerella sp. C99 partial 18S rRNA gene, strain C99
          Length = 421

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 137 caggtccttctccggggtcga 157
           |||||||||||||||||||||
Sbjct: 343 caggtccttctccggggtcga 323

>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete
              sequence
          Length = 190641

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 75     ctggtcatgggagtcctctcg 95
              |||||||||||||||||||||
Sbjct: 102410 ctggtcatgggagtcctctcg 102390

>ref|XM_580317.2| PREDICTED: Bos taurus collagen, type IV, alpha 1 (COL4A1), mRNA
          Length = 4920

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  ccgcagtgccccaccggctg 196
            ||||||||||||||||||||
Sbjct: 4690 ccgcagtgccccaccggctg 4709

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    gttccgctgcgccgacatga 252
              ||||||||||||||||||||
Sbjct: 807673 gttccgctgcgccgacatga 807692

>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  gttccgctgcgccgacatga 252
            ||||||||||||||||||||
Sbjct: 8366 gttccgctgcgccgacatga 8347

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    ccggctgctcggcgtgccgc 209
              ||||||||||||||||||||
Sbjct: 369417 ccggctgctcggcgtgccgc 369398


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,964,720
Number of Sequences: 3902068
Number of extensions: 1964720
Number of successful extensions: 33481
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33318
Number of HSP's gapped (non-prelim): 158
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)