ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40e06 |
|---|---|
| Clone Library Name | barley_pub |
>Y1829_MYCTU (Q50604) Hypothetical protein Rv1829/MT1877| Length = 164 Score = 52.4 bits (124), Expect = 1e-06 Identities = 27/112 (24%), Positives = 57/112 (50%) Frame = +1 Query: 10 EDGSDLLLPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD 189 E D LPI + ++ + + + + PRP +++++++ +G++++ VRI ++ Sbjct: 24 EANGDRYLPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVRIVDLQEG 83 Query: 190 AYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKV 345 +Y+ L + I +PSD++ IA R VPI V + + GL + Sbjct: 84 TFYADLIFDRN------IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129
>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing| protein 1 (GTF2I repeat domain-containing protein 1) (Muscle TFII-I repeat domain-containing protein 1) (General transcription factor III) (Slow-muscle-fiber enhancer binding Length = 959 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = +1 Query: 184 HDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPT 363 +DA SR+ +A T E+ F+ K +A+ I + +VP KRI N G +I+ P Sbjct: 692 YDARLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPY---KRIKSNPGSVIIEGLPP 748 Query: 364 G 366 G Sbjct: 749 G 749
>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)| (Keratin-4) (K4) Length = 534 Score = 32.0 bits (71), Expect = 1.4 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Frame = +1 Query: 106 TIYNVVKEMTEMMGYTVRLVRITEMVHDAYYS--RLYLAKTGNEEEVISFDLKPSDAINI 279 T +N++++ T T + E + + Y S R L GN++ + +LK Sbjct: 181 TKWNLLQQQT-----TTTSSKNLEPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVE 235 Query: 280 AFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYVNSDQIQYARLDKPGDQ 423 F+ K ++NKR A N V++ +Y+N +++ A++D D+ Sbjct: 236 DFKTKYEEEINKRTAAENDFVVLKKDVDAAYLNKVELE-AKVDSLNDE 282
>ION3_CARAU (P18520) Intermediate filament protein ON3| Length = 520 Score = 31.2 bits (69), Expect = 2.3 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = +1 Query: 175 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 348 + + +AY + L L GN++ + DL + F+ K ++NKR N +I Sbjct: 155 DAMFEAYINNLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENDFVLI 214 Query: 349 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 450 + +Y+N +++ A+L+ D+ F Q F+ Sbjct: 215 KKDVDEAYMNKVELE-AKLESLSDEINFLRQIFE 247
>Y1857_THEMA (Q9X2H2) UPF0144 protein TM1857| Length = 508 Score = 30.4 bits (67), Expect = 4.0 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Frame = +1 Query: 52 TPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD-AYYSRLYLAKTGN 228 TP +L+AA + RP +E E Y RL+++ E+ Y + Y + G Sbjct: 402 TPEAVLVAAADALSAARP---GARRESLE--NYIKRLMKLEEIAKSFKYVEKAYAIQAGR 456 Query: 229 EEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 348 E VI K DA+ + ++ + + Y LKV+ Sbjct: 457 EIRVIVEPDKVDDALAEKLAYDISKKIEEELEYPGVLKVV 496
>K2C8_BRARE (Q6NWF6) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)| (Keratin-8) (K8) Length = 520 Score = 30.0 bits (66), Expect = 5.2 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = +1 Query: 175 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 348 + + +AY + L L GN++ + DL + F+ K ++NKR N +I Sbjct: 161 DAMFEAYIANLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENEFVLI 220 Query: 349 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 450 + +Y+N +++ A+L+ D+ F Q F+ Sbjct: 221 KKDVDEAYMNKVELE-AKLESLTDEINFLRQIFE 253
>ATC1_DUNBI (P54209) Cation-transporting ATPase CA1 (EC 3.6.3.-)| Length = 1037 Score = 29.6 bits (65), Expect = 6.8 Identities = 26/104 (25%), Positives = 39/104 (37%) Frame = +1 Query: 55 PSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEE 234 P ++LL + N + T N K + ++ Y DA R G + Sbjct: 113 PMVILLILVANATVGVVTERNAEKAIEQLKSYEA---------DDATVLR-----NGQLQ 158 Query: 235 EVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTG 366 + S D+ P D + +A KVP Y LK+ Q TG Sbjct: 159 LIPSADIVPGDIVELAVGNKVPADTRVSHIYTTSLKIDQSLLTG 202
>UVRC_GEOSL (Q747I7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 613 Score = 29.6 bits (65), Expect = 6.8 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = +1 Query: 463 MLVAAVEERYKDAAQYRD 516 M AA +ERY+DAA+YRD Sbjct: 211 MAAAAADERYEDAARYRD 228
>K2C3_HUMAN (P12035) Keratin, type II cytoskeletal 3 (Cytokeratin-3) (CK-3)| (Keratin-3) (K3) (65 kDa cytokeratin) Length = 629 Score = 29.3 bits (64), Expect = 8.9 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = +1 Query: 196 YSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYV 375 Y R YL E + +LK + + F+ K ++NKR A N ++ +Y+ Sbjct: 257 YLRSYLDNILGERGRLDSELKNMEDLVEDFKKKYEDEINKRTAAENEFVTLKKDVDSAYM 316 Query: 376 NSDQIQYARLDKPGDQPCFEAQEFD 450 N ++Q A++D D+ F +D Sbjct: 317 NKVELQ-AKVDALIDEIDFLRTLYD 340
>ABCD1_MOUSE (P48410) ATP-binding cassette sub-family D member 1| (Adrenoleukodystrophy protein) (ALDP) Length = 736 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +1 Query: 109 IYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEEE 237 I + KE+TE+ GYT R+ + ++ D + R +TG+ EE Sbjct: 402 IMSSYKEVTELAGYTARVYEMFQVFEDVKHCR--FKRTGDLEE 442 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,818,226 Number of Sequences: 219361 Number of extensions: 1836130 Number of successful extensions: 5217 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5052 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5216 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
