ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40d14 |
|---|---|
| Clone Library Name | barley_pub |
>RPE65_MOUSE (Q91ZQ5) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 31.2 bits (69), Expect = 0.66 Identities = 19/72 (26%), Positives = 28/72 (38%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS V G G ++ + DL +A ++ + Sbjct: 462 PDSYPSEPIFVSQPDALEEDDGVVLSV--VVSPGAGQKPAYLLVLNAKDLSEIARAEVET 519 Query: 279 RVPYGFHGLFVR 314 +P FHGLF R Sbjct: 520 NIPVTFHGLFKR 531
>BCDO2_MOUSE (Q99NF1) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 532 Score = 30.8 bits (68), Expect = 0.86 Identities = 14/34 (41%), Positives = 22/34 (64%) Frame = +3 Query: 210 NRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLFV 311 N +V+DA+S + ++P ++PYGFHG FV Sbjct: 499 NFLLVLDAKS--FTELGRAEVPVQMPYGFHGTFV 530
>BCDO2_MACFA (Q8HXG8) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = +3 Query: 210 NRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLFV 311 N +V+DA++ + + ++P ++PYGFHG F+ Sbjct: 523 NFLLVLDAKN--FEELGRAEVPVQMPYGFHGTFI 554
>BCDO2_HUMAN (Q9BYV7) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = +3 Query: 210 NRFVVMDAQSPDLDIVAEVQLPSRVPYGFHGLFV 311 N +V+DA++ + + ++P ++PYGFHG F+ Sbjct: 523 NFLLVLDAKN--FEELGRAEVPVQMPYGFHGTFI 554
>RPE65_RAT (O70276) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 30.0 bits (66), Expect = 1.5 Identities = 18/70 (25%), Positives = 27/70 (38%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS V G G ++ + DL +A ++ + Sbjct: 462 PDSYPSEPIFVSQPDALEEDDGVVLSV--VVSPGAGQKPAYLLVLNAKDLSEIARAEVET 519 Query: 279 RVPYGFHGLF 308 +P FHGLF Sbjct: 520 NIPVTFHGLF 529
>RPE65_AMBTI (Q9YI25) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/70 (24%), Positives = 29/70 (41%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS EG ++++A+ D+ +A ++ S Sbjct: 462 PDTYPSEPIFVSQPDAIEEDDGVVLSVVISPGEGQKPAFLLILNAK--DMSEIARAEVDS 519 Query: 279 RVPYGFHGLF 308 +P FHG+F Sbjct: 520 NIPVTFHGMF 529
>PDXJ_SYNY3 (P72776) Pyridoxal phosphate biosynthetic protein pdxJ (PNP| synthase) Length = 242 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -2 Query: 107 APRPEVPARH-GAVAVACTVEVELGHPADFGHGVAH 3 AP + AR G++A+AC + +ELG + GHG+ + Sbjct: 161 APTADDQARELGSLAIACDIALELGLRINAGHGLTY 196
>RPE65_CHICK (Q9YGX2) Retinal pigment epithelium-specific 65 kDa protein| Length = 533 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/72 (26%), Positives = 28/72 (38%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS V G+G ++ + D+ VA ++ Sbjct: 463 PDSYPSEPIFVSHPDALEEDDGVVLSI--VISPGSGPKPAYLLILNAKDMSEVARAEVEV 520 Query: 279 RVPYGFHGLFVR 314 +P FHGLF R Sbjct: 521 NIPVTFHGLFKR 532
>RPE65_HUMAN (Q16518) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/70 (27%), Positives = 26/70 (37%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS V G G ++ + DL VA ++ Sbjct: 462 PDSYPSEPIFVSHPDALEEDDGVVLSV--VVSPGAGQKPAYLLILNAKDLSEVARAEVEI 519 Query: 279 RVPYGFHGLF 308 +P FHGLF Sbjct: 520 NIPVTFHGLF 529
>RPE65_CERAE (Q9XT71) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/70 (27%), Positives = 26/70 (37%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS V G G ++ + DL VA ++ Sbjct: 462 PDSYPSEPIFVSHPDALEEDDGVVLSV--VVSPGAGQKPAYLLILNAKDLSEVARAEVEI 519 Query: 279 RVPYGFHGLF 308 +P FHGLF Sbjct: 520 NIPVTFHGLF 529
>RPE65_CANFA (Q9TVB8) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/70 (27%), Positives = 26/70 (37%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS V G G ++ + DL VA ++ Sbjct: 462 PDSYPSEPIFVSHPDALEEDDGVVLSV--VVSPGAGQKPAYLLILNAKDLSEVARAEVEI 519 Query: 279 RVPYGFHGLF 308 +P FHGLF Sbjct: 520 NIPVTFHGLF 529
>RPE65_BOVIN (Q28175) Retinal pigment epithelium-specific 65 kDa protein| (Membrane receptor p63) Length = 532 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/70 (27%), Positives = 26/70 (37%) Frame = +3 Query: 99 PGCFAGEPFFVSXXXXXXXXXXXXXXXCYVHDEGTGDNRFVVMDAQSPDLDIVAEVQLPS 278 P + EP FVS V G G ++ + DL VA ++ Sbjct: 462 PDSYPSEPIFVSHPDALEEDDGVVLSV--VVSPGAGQKPAYLLILNAKDLSEVARAEVEI 519 Query: 279 RVPYGFHGLF 308 +P FHGLF Sbjct: 520 NIPVTFHGLF 529
>DKK2_HUMAN (Q9UBU2) Dickkopf-related protein 2 precursor (Dkk-2) (Dickkopf-2)| (hDkk-2) Length = 259 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -3 Query: 325 SSACLTNRPWKP*GTRDGSCTSATMSRSGDCASITTNRL 209 SSAC+ R K RDG C +T +G C +T + L Sbjct: 97 SSACMVCRRKKKRCHRDGMCCPSTRCNNGICIPVTESIL 135
>MDCG_PSEPU (Q9Z448) Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-)| (Holo-ACP synthase) Length = 204 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = -3 Query: 109 KHPGPKSRRATVQSPWPARSKSSLATPPILGMG 11 + GP++ R QSPWPA + TP + G Sbjct: 72 RQQGPEALRVHGQSPWPALQALASVTPVLQARG 104
>DKK2_MOUSE (Q9QYZ8) Dickkopf-related protein 2 precursor (Dkk-2) (Dickkopf-2)| (mDkk-2) Length = 259 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -3 Query: 325 SSACLTNRPWKP*GTRDGSCTSATMSRSGDCASITTNRL 209 SSAC+ R K RDG C T +G C +T + L Sbjct: 97 SSACMLCRRKKKRCHRDGMCCPGTRCNNGICIPVTESIL 135
>FETUB_HUMAN (Q9UGM5) Fetuin-B precursor (IRL685) (16G2)| Length = 382 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -3 Query: 103 PGPKSRRATVQSPWPARSKSSLATPP 26 P PK + T + P PA++ S L PP Sbjct: 357 PFPKEKARTAECPGPAQNASPLVLPP 382
>POLG_PEV9U (O41174) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2167 Score = 27.3 bits (59), Expect = 9.5 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = +3 Query: 189 HDEGTGDNRFVVMDA--QSPD-LDIVAEVQLPSRVPYGFHGLFVRQAELRFTAPMII 350 H +G VVMD Q+PD D+VA Q+ S VPY + + + FT+ ++ Sbjct: 1246 HFDGYQQQAVVVMDDLNQNPDGKDMVAFCQMVSTVPYHVPMAAIEEKGMLFTSSYVL 1302 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,702,093 Number of Sequences: 219361 Number of extensions: 615581 Number of successful extensions: 2173 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2171 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
