ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (E... 74 8e-14
2SNX41_CRYNE (Q5KKB9) Sorting nexin-41 28 6.7
3MTGA_AGRT5 (Q8UBX8) Monofunctional biosynthetic peptidoglycan tr... 28 8.8

>CAHC_HORVU (P40880) Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1)|
           (Carbonate dehydratase)
          Length = 324

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 40/56 (71%), Positives = 40/56 (71%)
 Frame = +3

Query: 15  APRARSSTIAASLGTPAPSSSASFRPKLIRTTXXXXXXXXXXXXXXXXERLKTGFE 182
           APRARSSTIAASLGTPAPSSSASFRPKLIRTT                ERLKTGFE
Sbjct: 80  APRARSSTIAASLGTPAPSSSASFRPKLIRTTPVQAAPVAPALMDAAVERLKTGFE 135



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>SNX41_CRYNE (Q5KKB9) Sorting nexin-41|
          Length = 638

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 9   PXAPRARSSTIAASLGTPAPSSSASF 86
           P  PR  SS ++A+ G+P P+  ASF
Sbjct: 26  PPVPRKPSSLVSAASGSPPPTHRASF 51



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>MTGA_AGRT5 (Q8UBX8) Monofunctional biosynthetic peptidoglycan transglycosylase|
           (EC 2.4.2.-) (Monofunctional TGase)
          Length = 226

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 79  AEEEGAGVPRLAAMVEERARGAXGCV 2
           A + G G+ RLA ++E RAR + G V
Sbjct: 196 ASKPGRGLQRLAGLIERRARASGGYV 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,740,682
Number of Sequences: 219361
Number of extensions: 121718
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 80,573,946
effective HSP length: 36
effective length of database: 72,676,950
effective search space used: 1744246800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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