ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40c24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13, complete sequence Length = 102842 Score = 145 bits (73), Expect = 1e-31 Identities = 106/117 (90%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 83367 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgatgatga 83308 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||| ||||||||||||||||||| || ||||||||||||||| Sbjct: 83307 tcgccaccttcttgatctagcaagaggggcggagaggtagaagagttctccgacagc 83251 Score = 145 bits (73), Expect = 1e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||| Sbjct: 63773 ccgatctagtgccgaacggacgacacctccgcgttcagcacacgtacaactcgacgatga 63832 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 63833 tctcggccttcttgatccagcaagagagacggagaggtagatgagttctccggcagc 63889 Score = 137 bits (69), Expect = 3e-29 Identities = 106/117 (90%), Gaps = 1/117 (0%) Strand = Plus / Minus Query: 134 gatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatg 193 ||||||||| |||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 98512 gatctagtgtcgaacggacggcacctccgcgttcagcacacgtacagctcgatgatgatc 98453 Query: 194 tccgccttcttgatccagcaaga-ggggcggagaggcagctgagttctccgacagca 249 ||| ||||||||||||||||||| |||||||||||| || |||||||||||||||| Sbjct: 98452 tccaccttcttgatccagcaagagggggcggagaggtagaagagttctccgacagca 98396 Score = 129 bits (65), Expect = 7e-27 Identities = 104/117 (88%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct: 56989 ccgatctagtgccgaacggacggcacctccgcgttcagcacatgtacaactcgacgatga 57048 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | | ||||||||||||||||||||| | ||||||| || ||||||||||| |||| Sbjct: 57049 tcccagccttcttgatccagcaagagagatggagaggtagatgagttctccggcagc 57105 Score = 91.7 bits (46), Expect = 1e-15 Identities = 70/78 (89%) Strand = Plus / Plus Query: 138 tagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtccg 197 ||||| |||| ||||| ||||| |||||||||||||||||||||| || |||||| || | Sbjct: 70211 tagtgtcgaacggacgacacctccgcgttcagcacacgtacaacttgatgatgatctcgg 70270 Query: 198 ccttcttgatccagcaag 215 |||||||||||||||||| Sbjct: 70271 ccttcttgatccagcaag 70288 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 36 aatgcggttgatgtagtcgaacatc 60 ||||||||||||||||| ||||||| Sbjct: 56896 aatgcggttgatgtagtggaacatc 56920 Score = 42.1 bits (21), Expect = 1.2 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 21116 ccgatctagtgccgaa-ctacggcacctccgcgttcaacacacgt 21073
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus region Length = 160897 Score = 143 bits (72), Expect = 5e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 34022 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 34081 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 34082 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 34137 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 156079 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 156138 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 156139 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 156194 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 27214 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 27273 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 27274 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 27329 Score = 129 bits (65), Expect = 7e-27 Identities = 104/117 (88%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 21754 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatga 21813 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||||||| | |||||| || ||||||||||| |||| Sbjct: 21814 tctcggccttcttgatccagcaagagagatagagaggtagatgagttctccggcagc 21870 Score = 125 bits (63), Expect = 1e-25 Identities = 102/115 (88%) Strand = Plus / Minus Query: 134 gatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatg 193 |||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 109038 gatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgatc 108979 Query: 194 tccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 108978 tcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 108924 Score = 125 bits (63), Expect = 1e-25 Identities = 102/115 (88%) Strand = Plus / Minus Query: 134 gatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatg 193 |||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 101909 gatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgatc 101850 Query: 194 tccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 101849 tcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 101795 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| |||||||||| ||||||||||||||||| | ||||| ||||| Sbjct: 35699 ccgatctagtgccgaacagacggcacctccgcgttcagcacacgtatagctcgacgatga 35758 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||||||||||||||||||||| | |||||||| || |||||||||| Sbjct: 35759 tctcggccttcttgatccagcaagagagacggagaggtagatgagttctcc 35809 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| ||||| Sbjct: 18442 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtatagctcgacgatga 18501 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||||||||||||||||||||| | | |||||| || |||||||||| Sbjct: 18502 tctcggccttcttgatccagcaagagagacagagaggtagatgagttctcc 18552 Score = 123 bits (62), Expect = 4e-25 Identities = 104/118 (88%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| |||| |||||| ||||||||||||||||||| ||||| ||||| Sbjct: 40569 ccgatctagtgccgaacggacagcacctccgcgttcagcacacgtacagctcgacgatga 40628 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagca 249 | | ||||||||||||||||||||| | |||||| | || ||||||||||| ||||| Sbjct: 40629 tcttggccttcttgatccagcaagagagacggagatgtagatgagttctccggcagca 40686 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||| ||||| ||||||||||||||||||| ||||| |||||| Sbjct: 142790 cgatctagtaccgaacggacgacacctccgcgttcagcacacgtacagctcgacgatgat 142849 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | | |||||| || |||||||||| |||| Sbjct: 142850 ctcggccttcttgatccagcaagagagacagagaggtagaagagttctccggcagc 142905 Score = 111 bits (56), Expect = 2e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 135226 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 135285 Query: 193 gtccgccttcttgatccagcaagaggggcggagagg 228 || | |||||||||||| |||||| | |||||||| Sbjct: 135286 ctcggtcttcttgatccaacaagagagacggagagg 135321 Score = 111 bits (56), Expect = 2e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtcc 196 ||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| || Sbjct: 69159 ctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgatctcg 69100 Query: 197 gccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 ||||||||||||||||||||| | ||||||| || |||||||||| |||| Sbjct: 69099 gccttcttgatccagcaagagagacggagagctaggagagttctccggcagc 69048 Score = 105 bits (53), Expect = 1e-19 Identities = 77/85 (90%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| |||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 135892 cgatctagtatcgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 135951 Query: 193 gtccgccttcttgatccagcaagag 217 || ||||||||||||||||||||| Sbjct: 135952 ctcggccttcttgatccagcaagag 135976 Score = 91.7 bits (46), Expect = 1e-15 Identities = 91/106 (85%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtcc 196 ||||| ||||| ||||| ||||| | ||||||||||||||||| ||||| |||||| || Sbjct: 76270 ctagtaccgaacggacgacacctccacgttcagcacacgtacagctcgacgatgatctcg 76211 Query: 197 gccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 ||||||||||||||||||||| | ||||||| || ||||||||| Sbjct: 76210 gccttcttgatccagcaagagagaaggagaggtaggagagttctcc 76165
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 143 bits (72), Expect = 5e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 166095 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 166154 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 166155 ctcggccttcttgatccagcaagagagacggagaggtagatgagttctccggcagc 166210 Score = 137 bits (69), Expect = 3e-29 Identities = 105/117 (89%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||||| |||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 250950 ccgatctagtgtcgaacggacggcacctccgcgttcagcacacgtacagctcgacgatga 250891 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 250890 tctcggccttcttgatccagcaagagagacggagaggtagatgagttctccggcagc 250834 Score = 137 bits (69), Expect = 3e-29 Identities = 105/117 (89%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||||| |||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 244151 ccgatctagtgtcgaacggacggcacctccgcgttcagcacacgtacagctcgacgatga 244092 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 244091 tctcggccttcttgatccagcaagagagacggagaggtagatgagttctccggcagc 244035 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 236386 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 236445 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 236446 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 236501 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 153173 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 153114 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 153113 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 153058 Score = 133 bits (67), Expect = 4e-28 Identities = 103/115 (89%) Strand = Plus / Plus Query: 134 gatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatg 193 |||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 230527 gatctagtaccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgatc 230586 Query: 194 tccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 230587 tcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 230641 Score = 133 bits (67), Expect = 4e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 146375 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 146316 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccg 243 || ||||||||||||||||||||| | |||||||| || |||||||||| Sbjct: 146315 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccg 146265 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||| Sbjct: 172880 cgatctagtgccgaacggacggcacctctgcgttcagcacaagtacaactcgacgatgat 172939 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | ||||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 172940 cttggccttcttgatccagcaagagagacggagaggtagatgagttctccggcagc 172995 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 188966 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 188907 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | ||||||| || |||||||||| |||| Sbjct: 188906 ctcggccttcttgatccagcaagagagatggagaggtagaagagttctccggcagc 188851 Score = 42.1 bits (21), Expect = 1.2 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 158588 ccgatctagtgccgaa-ctacggcacctccgcgttcaacacacgt 158631
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence Length = 102433 Score = 143 bits (72), Expect = 5e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 51410 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 51469 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 51470 ctcggccttcttgatccagcaagagagacggagaggtagatgagttctccggcagc 51525 Score = 127 bits (64), Expect = 3e-26 Identities = 79/84 (94%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 44786 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtacaactcgatgatga 44727 Query: 192 tgtccgccttcttgatccagcaag 215 | || ||||||||||||||||||| Sbjct: 44726 tctcggccttcttgatccagcaag 44703 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||| |||||| Sbjct: 58185 cgatctagtgccgaacggacgacacctccgcgttcagcacacgtacagctcgacgatgat 58244 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | |||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 58245 cttggccttcttgatccagcaagatagacggagaggtagatgagttctccggcagc 58300 Score = 105 bits (53), Expect = 1e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| |||||||||| ||| |||| |||||||||||||||| ||||| Sbjct: 60475 ccgatctagtgccgaactgacggcacctccgcattcatcacacgtacaactcgacgatga 60416 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||||| | |||||| | || ||||||||||| |||| Sbjct: 60415 tctcggccttcttgatccagcaagcaagacggagaagtagatgagttctccggcagc 60359
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 143 bits (72), Expect = 5e-31 Identities = 102/112 (91%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 172505 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatga 172564 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccg 243 | || ||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct: 172565 tctcggccttcttgatccagcaagagagacggagaggtagatgagttctccg 172616 Score = 135 bits (68), Expect = 1e-28 Identities = 101/112 (90%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| |||||||||||||| |||| ||||| ||||| Sbjct: 165683 ccgatctagtgccgaacggacggcacctccgcgttcagcacacatacagctcgacgatga 165742 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccg 243 | || ||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct: 165743 tctcggccttcttgatccagcaagagagacggagaggtagatgagttctccg 165794 Score = 135 bits (68), Expect = 1e-28 Identities = 101/112 (90%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| | ||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 125188 ccgatctagtgccgaacgaacggcacctccgcgttcagcacacgtacatctcgacgatga 125247 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccg 243 | || ||||||||||||||||||||| | |||||||| || ||||||||||| Sbjct: 125248 tctcagccttcttgatccagcaagagagacggagaggtagatgagttctccg 125299 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 55948 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 55889 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 55888 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 55833 Score = 129 bits (65), Expect = 7e-27 Identities = 104/117 (88%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| |||||||||| |||||||||||||| |||||||||| ||||| Sbjct: 117892 ccgatctagtgccgaacagacggcacctccgcgttcagcacacatacaactcgacgatga 117951 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||||||| | ||||||| || ||||||||||| |||| Sbjct: 117952 tctcggccttcttgatccagcaagagagatggagaggtagatgagttctccggcagc 118008 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 81045 cgatctagtaccgaacagacggcacctccgcgttcagcacacgtacaactcgacgatgat 80986 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 80985 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 80930 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 118657 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 118716 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | || ||||| || |||||||||| |||| Sbjct: 118717 ctcggccttcttgatccagcaagagagacgaagaggtagaagagttctccggcagc 118772 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 96830 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 96889 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || |||||||||||| |||||||| | |||||||| || |||||||||| |||| Sbjct: 96890 ctcggccttcttgatctagcaagagagacggagaggtagaagagttctccggcagc 96945 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| || || ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 89731 cgatctagtaccaaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 89790 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 89791 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 89846 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| |||||||||||||||||| ||||| |||||| Sbjct: 88144 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacggctcgacgatgat 88085 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 88084 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 88029 Score = 111 bits (56), Expect = 2e-21 Identities = 77/84 (91%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 57677 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 57618 Query: 193 gtccgccttcttgatccagcaaga 216 || |||||||||||||||||||| Sbjct: 57617 ctcggccttcttgatccagcaaga 57594 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 51287 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 51346 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||| ||||| | | |||||| || |||||||||| |||| Sbjct: 51347 ctcggccttcttgatccagtaagagagacagagaggtagaagagttctccggcagc 51402 Score = 107 bits (54), Expect = 3e-20 Identities = 96/110 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 |||||| || ||||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 381292 cgatcttgtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacaatgat 381233 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 || ||||||||||||||||||||| | |||||||| || ||||||||| Sbjct: 381232 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctcc 381183 Score = 103 bits (52), Expect = 4e-19 Identities = 100/116 (86%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| | |||||||||||||||| || || |||||| Sbjct: 366112 cgatctagtaccgaacggacggcacctctgtgttcagcacacgtacagcttgacgatgat 366053 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 366052 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 365997 Score = 79.8 bits (40), Expect = 6e-12 Identities = 76/88 (86%) Strand = Plus / Plus Query: 130 tcccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggat 189 ||||||||||| | ||| ||| | ||||| ||||||||| || |||||| ||||| ||| Sbjct: 32076 tcccgatctagcgtcgatcggatgacacctccgcgttcagtacgcgtacagctcgatgat 32135 Query: 190 gatgtccgccttcttgatccagcaagag 217 ||| |||||||||||||||||||||||| Sbjct: 32136 gatctccgccttcttgatccagcaagag 32163 Score = 56.0 bits (28), Expect = 8e-05 Identities = 66/76 (86%), Gaps = 2/76 (2%) Strand = Plus / Plus Query: 4 acccttgtagatcgctaaggg-gaagcgtatataat-gcggttgatgtagtcgaacatct 61 ||||||||||||||||||| | ||||||| | || |||||||||||||| | |||||| Sbjct: 31983 acccttgtagatcgctaagcgagaagcgttaagaaacgcggttgatgtagtgggacatct 32042 Query: 62 tcgcaatccaaatcgc 77 |||| ||||||||||| Sbjct: 32043 tcgccatccaaatcgc 32058
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 101952 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 102011 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 102012 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 102067 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 95156 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 95215 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 95216 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 95271 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||| ||||| ||||||||||||||||||| ||||| |||||| Sbjct: 143812 cgatctagtaccgaacggacgacacctccgcgttcagcacacgtacagctcgacgatgat 143871 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 143872 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 143927 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 130 tcccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggat 189 |||||||| ||||||||| ||||||||||| ||||||| ||||||||||| ||||| || Sbjct: 92800 tcccgatcaagtgccgaacggacggcaccttcgcgttccgcacacgtacagctcgatgac 92741 Query: 190 gatgtccgccttcttgatccagcaagaggggcgg 223 ||| |||||||| ||||||||||||||||||||| Sbjct: 92740 gatctccgccttgttgatccagcaagaggggcgg 92707
>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece Length = 120562 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 12175 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 12116 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 12115 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 12060 Score = 131 bits (66), Expect = 2e-27 Identities = 105/118 (88%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 79457 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatga 79398 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagca 249 | | ||||||||||||||||||||| | |||||| || ||||||||||| ||||| Sbjct: 79397 tcttggccttcttgatccagcaagagaaacagagaggtagatgagttctccggcagca 79340 Score = 121 bits (61), Expect = 2e-24 Identities = 100/113 (88%) Strand = Plus / Minus Query: 136 tctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtc 195 |||||||||||| ||||||||||| |||||||||||||||| || ||||| |||||| || Sbjct: 86347 tctagtgccgaacggacggcacctccgcgttcagcacacgtccagctcgacgatgatctc 86288 Query: 196 cgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 ||||||||||||||||||||| | | |||||| || ||||||||||| |||| Sbjct: 86287 ggccttcttgatccagcaagagagacagagaggtagatgagttctccggcagc 86235 Score = 113 bits (57), Expect = 4e-22 Identities = 84/93 (90%) Strand = Plus / Plus Query: 125 atccatcccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcg 184 |||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 41429 atccgtcccgatctagcaccgaacggacggcacctccgcgttcagcacacgtacaactcg 41488 Query: 185 aggatgatgtccgccttcttgatccagcaagag 217 | || ||| ||||| |||||||||||||||||| Sbjct: 41489 atgacgatctccgctttcttgatccagcaagag 41521 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 42577 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 42636 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || |||||||||||| || ||||| | |||||||| || |||||||||| |||| Sbjct: 42637 ctcggccttcttgatctagaaagagagacggagaggtagaagagttctccggcagc 42692 Score = 109 bits (55), Expect = 6e-21 Identities = 97/111 (87%) Strand = Plus / Minus Query: 138 tagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtccg 197 |||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| || | Sbjct: 5378 tagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgatctcgg 5319 Query: 198 ccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 |||||||||||||||||||| | | |||||| || |||||||||| |||| Sbjct: 5318 ccttcttgatccagcaagagagacagagaggtagaagagttctccggcagc 5268 Score = 107 bits (54), Expect = 3e-20 Identities = 102/118 (86%) Strand = Plus / Plus Query: 125 atccatcccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcg 184 |||| |||||||| ||||| ||| ||||| ||||| ||||||| ||||||||||| |||| Sbjct: 98990 atccgtcccgatcaagtgctgaacggacgacacctccgcgttccgcacacgtacagctcg 99049 Query: 185 aggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||| || ||||||||||| || ||||||||||||||||| || |||||||||| Sbjct: 99050 atgacgatctctgccttcttgatacaacaagaggggcggagaggtagatgagttctcc 99107
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence Length = 77136 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 74558 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 74499 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 74498 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 74443 Score = 129 bits (65), Expect = 7e-27 Identities = 104/117 (88%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||||||| || ||||||||||| ||||||| ||||||||||| ||||| ||||| Sbjct: 43769 ccgatctagtgccaaacggacggcacctccgcgttccgcacacgtacagctcgacgatga 43828 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 43829 tctcggccttcttgatccagcaagagagacggagaggtagatgagttctccggcagc 43885 Score = 109 bits (55), Expect = 6e-21 Identities = 103/119 (86%) Strand = Plus / Plus Query: 130 tcccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggat 189 |||||||||||||||||| |||||||| || |||||||| |||||||||||||||| ||| Sbjct: 65854 tcccgatctagtgccgaacggacggcatctccgcgttcaacacacgtacaactcgacgat 65913 Query: 190 gatgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 ||| || |||||||||||||| |||| | |||||| | || ||||||||||| |||| Sbjct: 65914 gatctcggccttcttgatccaacaagcaagacggagaagtagatgagttctccggcagc 65972 Score = 93.7 bits (47), Expect = 4e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 125 atccatcccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcg 184 |||| |||||||||||||||||| ||||| ||||| ||||||||||| ||||| | |||| Sbjct: 72655 atccgtcccgatctagtgccgaacggacgacacctccgcgttcagcaaacgtatagctcg 72714 Query: 185 aggatgatgtccgccttcttgatccagcaag 215 | |||||| || |||||||||||| |||||| Sbjct: 72715 acgatgatctcggccttcttgatctagcaag 72745 Score = 44.1 bits (22), Expect = 0.31 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaac 181 |||||||||||||||| ||||||||| |||||||| ||||||| |||| Sbjct: 38885 ccgatctagtgccgaa-ctacggcacctccgcgttcaacacacgtgcaac 38837 Score = 42.1 bits (21), Expect = 1.2 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 31845 ccgatctagtgccgaa-ctacggcacctccgcgttcaacacacgt 31802
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 60588 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 60647 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 60648 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 60703 Score = 135 bits (68), Expect = 1e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 53823 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 53882 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 53883 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 53938 Score = 42.1 bits (21), Expect = 1.2 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 22253 ccgatctagtgccgaa-ccacggcacctccgcgttcaacacacgt 22210
>emb|AJ582612.1|HPU582612 Hordeum pusillum retrotransposon BARE1 long terminal repeat DNA, clone HPUSE Length = 1891 Score = 131 bits (66), Expect = 2e-27 Identities = 106/118 (89%), Gaps = 1/118 (0%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||| || || Sbjct: 1592 ccgatctagcgccgaacggacggcacctccgcgttcagcacacgtacagctcgatgacga 1533 Query: 192 tgtccgccttcttgatccagcaagag-gggcggagaggcagctgagttctccgacagc 248 | |||||||||||||||||||||||| | ||||||||| || ||||||||||| |||| Sbjct: 1532 tctccgccttcttgatccagcaagagagagcggagaggtagatgagttctccggcagc 1475 Score = 87.7 bits (44), Expect = 2e-14 Identities = 112/132 (84%), Gaps = 2/132 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaag-gggaagcgtatataat-gcggttgatgtagtcgaacatct 61 |||||||||||||||||| ||||||||| | || ||||||||||||||||||| ||| Sbjct: 1791 acccttgtagatcgctaaccgggaagcgttaagaaacgcggttgatgtagtcgaacgtct 1732 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtcccatgatcccatc 121 |||| || |||||||| | |||||||| ||||||||| |||||||| || ||||| ||| Sbjct: 1731 tcgcgattcaaatcgccgagcgtcctgcaatcccatcatgatccgtctcacgatccaatc 1672 Query: 122 acaatccatccc 133 || |||| |||| Sbjct: 1671 acgatccgtccc 1660 Score = 46.1 bits (23), Expect = 0.080 Identities = 32/35 (91%) Strand = Plus / Minus Query: 89 cgatcccatcacgatccgtcccatgatcccatcac 123 |||||| |||||||||||||||| |||| |||||| Sbjct: 1681 cgatccaatcacgatccgtcccacgatctcatcac 1647
>emb|AJ582610.1|HEU582610 Hordeum euclaston retrotransposon BARE1 long terminal repeat DNA, clone HEUCE Length = 1665 Score = 131 bits (66), Expect = 2e-27 Identities = 136/158 (86%), Gaps = 1/158 (0%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 |||||||| |||||| ||||||||||| ||||||||||||||||||| ||||| || ||| Sbjct: 1412 cgatctagcgccgaacggacggcacctccgcgttcagcacacgtacagctcgatgacgat 1353 Query: 193 gtccgccttcttgatccagcaagaggg-gcggagaggcagctgagttctccgacagcaca 251 |||||||||||||||||||||||||| | ||||||| | |||||| |||| ||||||| Sbjct: 1352 ctccgccttcttgatccagcaagagggagtggagaggttgatgagttatccgccagcaca 1293 Query: 252 acaacatggtggagatggtggtggagctgatccgacag 289 || | |||||| ||||||||||||| |||||||| Sbjct: 1292 acggcgtggtggcagtggtggtggagctattccgacag 1255 Score = 60.0 bits (30), Expect = 5e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 41 ggttgatgtagtcgaacatcttcgcaatccaaatcgcagttcgtcctgcgatcccatcac 100 |||||||||||||||| ||||||| ||||||||||| ||||| || ||||||||| Sbjct: 1526 ggttgatgtagtcgaatgtcttcgcgatccaaatcgctagccgtcccgcaatcccatcat 1467 Query: 101 gatccgtccc 110 |||||||||| Sbjct: 1466 gatccgtccc 1457
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 129 bits (65), Expect = 7e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 101562 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatga 101621 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttct 240 | || ||||||||||||||||||||| | | |||||| || |||||||| Sbjct: 101622 tctcggccttcttgatccagcaagagagacagagaggtagatgagttct 101670 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 44514 cgatctactgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 44573 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 44574 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 44629 Score = 123 bits (62), Expect = 4e-25 Identities = 98/110 (89%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 30169 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 30110 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 || ||||||||||||||||||||| | |||||||| || ||||||||| Sbjct: 30109 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctcc 30060 Score = 119 bits (60), Expect = 7e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 122860 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 122801 Query: 193 gtccgccttcttgatccagcaagaggggcggagagg 228 || ||||||||||||||||||||| | |||||||| Sbjct: 122800 ctcggccttcttgatccagcaagagagacggagagg 122765 Score = 113 bits (57), Expect = 4e-22 Identities = 78/85 (91%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 28458 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 28517 Query: 193 gtccgccttcttgatccagcaagag 217 | ||||||||||||||||||||| Sbjct: 28518 cttggccttcttgatccagcaagag 28542 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 37281 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 37222 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || || |||||||||||||||||| | | ||||| || ||||||||||||||| Sbjct: 37221 ctcggcattcttgatccagcaagagagacaaagaggtagaagagttctccgacagc 37166
>emb|Y18774.2|HROY18774 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSC) Length = 1797 Score = 129 bits (65), Expect = 7e-27 Identities = 102/113 (90%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtcc 196 ||||||||||||||||||||||| |||||||| |||||||||| ||||| || ||| ||| Sbjct: 1596 ctagtgccgaatggacggcacctccgcgttcaacacacgtacagctcgatgacgatctcc 1537 Query: 197 gccttcttgatccagcaagaggg-gcggagaggcagctgagttctccgacagc 248 ||||||||||||||||||||||| ||||||||| || |||||||||| |||| Sbjct: 1536 gccttcttgatccagcaagagggagcggagaggtagaagagttctccggcagc 1484 Score = 79.8 bits (40), Expect = 6e-12 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgtatataat-gcggttgatgtagtcgaacatctt 62 ||||||||||||||||||| |||||||| |||| ||||||||||||||||||| ||| Sbjct: 1697 acccttgtagatcgctaagcggaagcgttaataaacgcggttgatgtagtcgaacgtctc 1638 Query: 63 cgcaatccaaatcgca 78 ||| |||||||||||| Sbjct: 1637 cgcgatccaaatcgca 1622
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 56799 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 56858 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 56859 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 56914 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||| ||||| Sbjct: 30786 ccgatctagtgccgaacggacgacacctccgcgttcagcacacgtacagctcgacgatga 30845 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || ||||||||||||||||| ||| | ||||||| || ||||||||||| |||| Sbjct: 30846 tctcggccttcttgatccagcaggagagagggagaggtagatgagttctccggcagc 30902 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 22812 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 22753 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagca 249 || ||||||||||||||||||||| | |||||||| || || ||||||| ||||| Sbjct: 22752 ctcggccttcttgatccagcaagagagacggagaggtagaagatttctccggcagca 22696 Score = 119 bits (60), Expect = 7e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 15704 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 15645 Query: 193 gtccgccttcttgatccagcaagaggggcggagagg 228 || ||||||||||||||||||||| | |||||||| Sbjct: 15644 ctcggccttcttgatccagcaagagagacggagagg 15609
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete sequence Length = 113510 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 72755 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 72814 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 72815 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 72870 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 65967 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 66026 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | ||||||| || |||||||||| |||| Sbjct: 66027 ctcggccttcttgatccagcaagagagatggagaggtagaagagttctccggcagc 66082 Score = 87.7 bits (44), Expect = 2e-14 Identities = 103/123 (83%), Gaps = 6/123 (4%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactc------ga 185 |||||||||||||||| ||||| ||||| ||||||||||||||||||| ||| || Sbjct: 107927 ccgatctagtgccgaacggacgacacctccgcgttcagcacacgtacagctcgacaatga 107986 Query: 186 ggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgac 245 ||||| || ||||||||||||||||||||| |||||||| || ||||||||||| | Sbjct: 107987 caatgatctcggccttcttgatccagcaagagatacggagaggtagatgagttctccggc 108046 Query: 246 agc 248 ||| Sbjct: 108047 agc 108049
>gb|DQ175993.1| Hordeum vulgare subsp. vulgare clone 65-23A-RB flanking T-DNA insertion sequence Length = 634 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 |||||||||| |||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 561 cgatctagtgtcgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 502 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || |||||||||||||| |||||| | |||||||| || ||||||||||| |||| Sbjct: 501 ctcagccttcttgatccaacaagagagacggagaggtagatgagttctccggcagc 446
>emb|Y18770.2|HVUY18770 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULD) Length = 1723 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 1519 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 1460 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 1459 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 1404
>emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial BAGY-2 retrotransposons Length = 19906 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 11981 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 11922 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 11921 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 11866 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct: 5177 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgac 5118 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 5117 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 5062
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 101368 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 101309 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 101308 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 101253 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 90455 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 90514 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 90515 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 90570 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 26863 cgatctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 26804 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||| ||||| | | |||||| || ||||||||||| |||| Sbjct: 26803 ctcggccttcttgatccagtaagagagacagagaggtagatgagttctccggcagc 26748 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 89459 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 89400 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| |||||||| || |||||||||| |||| Sbjct: 89399 ctcggccttcttgatccagcaagagatacggagaggtagaagagttctccggcagc 89344 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| |||||||||||| |||||| ||||| |||||| Sbjct: 98399 cgatctagtaccgaacggacggcacctccgcgttcagcacccgtacagctcgacgatgat 98340 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | || ||||| || |||||||||| |||| Sbjct: 98339 ctcggccttcttgatccagcaagagagacgaagaggtagaagagttctccggcagc 98284 Score = 83.8 bits (42), Expect = 4e-13 Identities = 72/82 (87%) Strand = Plus / Minus Query: 134 gatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatg 193 ||||||| |||||| |||| |||||| |||||||| |||||||||| ||||| ||| || Sbjct: 48701 gatctagcgccgaacggactgcacctccgcgttcaacacacgtacagctcgacgatcatc 48642 Query: 194 tccgccttcttgatccagcaag 215 || ||||||||||||||||||| Sbjct: 48641 tcggccttcttgatccagcaag 48620 Score = 42.1 bits (21), Expect = 1.2 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 56207 ccgatctagtgccgaa-caacggcacctccgcgttcaacacacgt 56250 Score = 42.1 bits (21), Expect = 1.2 Identities = 40/45 (88%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 1990 ccgatctagtgccgaa-caacggcacctccgcgttcaacacacgt 1947
>gb|AY642925.1| Hordeum vulgare BAC 124C9, complete sequence Length = 12258 Score = 127 bits (64), Expect = 3e-26 Identities = 103/116 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 5726 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 5785 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 5786 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 5841
>gb|DQ175850.1| Hordeum vulgare clone DsC13 Ds insertion site flanking region genomic sequence Length = 654 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| ||||| Sbjct: 235 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtatagctcgacgatga 294 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||||||||||||||||||||| | | |||||| || |||||||||| Sbjct: 295 tctcggccttcttgatccagcaagagagacagagaggtagatgagttctcc 345
>gb|DQ175834.1| Hordeum vulgare clone DsB36 Ds insertion site flanking region genomic sequence Length = 700 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| ||||| Sbjct: 235 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtatagctcgacgatga 294 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||||||||||||||||||||| | | |||||| || |||||||||| Sbjct: 295 tctcggccttcttgatccagcaagagagacagagaggtagatgagttctcc 345
>gb|DQ175828.1| Hordeum vulgare clone DsB23 Ds insertion site flanking region genomic sequence Length = 703 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| ||||| Sbjct: 284 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtatagctcgacgatga 343 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||||||||||||||||||||| | | |||||| || |||||||||| Sbjct: 344 tctcggccttcttgatccagcaagagagacagagaggtagatgagttctcc 394
>gb|DQ175823.1| Hordeum vulgare clone DsB13 Ds insertion site flanking region genomic sequence Length = 673 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| ||||| Sbjct: 418 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtatagctcgacgatga 477 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||||||||||||||||||||| | | |||||| || |||||||||| Sbjct: 478 tctcggccttcttgatccagcaagagagacagagaggtagatgagttctcc 528
>gb|DQ175806.1| Hordeum vulgare clone DsA24 Ds insertion site flanking region genomic sequence Length = 520 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||||||||| ||||||||||||||||| | ||||| ||||| Sbjct: 202 ccgatctagtgccgaacggacggcacctccgcgttcagcacacgtatagctcgacgatga 261 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctcc 242 | || ||||||||||||||||||||| | | |||||| || |||||||||| Sbjct: 262 tctcggccttcttgatccagcaagagagacagagaggtagatgagttctcc 312
>emb|AJ582611.1|HPU582611 Hordeum pusillum retrotransposon BARE1 long terminal repeat DNA, clone HPUSD Length = 1564 Score = 125 bits (63), Expect = 1e-25 Identities = 124/143 (86%), Gaps = 1/143 (0%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||| ||| ||||| ||||| ||||||||||||||||||| ||||| || ||| Sbjct: 1368 cgatctagtgcggaacggacgacacctccgcgttcagcacacgtacagctcgatgacgat 1309 Query: 193 gtccgccttcttgatccagcaagag-gggcggagaggcagctgagttctccgacagcaca 251 ||||||| |||||||||||||| | ||||||||||| || ||||||||||| ||||||| Sbjct: 1308 ctccgcctccttgatccagcaagcgagggcggagaggtagatgagttctccggcagcaca 1249 Query: 252 acaacatggtggagatggtggtg 274 || | |||||| | |||||||| Sbjct: 1248 acggcgtggtggcggtggtggtg 1226 Score = 65.9 bits (33), Expect = 9e-08 Identities = 64/73 (87%), Gaps = 1/73 (1%) Strand = Plus / Minus Query: 7 cttgtagatcgctaag-gggaagcgtatataatgcggttgatgtagtcgaacatcttcgc 65 |||||||||||||||| |||||| || | || |||||||||||||| |||| ||||||| Sbjct: 1462 cttgtagatcgctaagcgggaagagttaagaacgcggttgatgtagttgaacgtcttcgc 1403 Query: 66 aatccaaatcgca 78 |||||||||||| Sbjct: 1402 catccaaatcgca 1390
>emb|X57845.1|HVGNIRE H.vulgare gene for nitrate reductase Length = 7299 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 138 tagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtccg 197 |||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| || | Sbjct: 856 tagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgatctcgg 797 Query: 198 ccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 |||||||||||||||||||| | ||||||| || ||||||||||| |||| Sbjct: 796 ccttcttgatccagcaagagacgaggagaggtagatgagttctccggcagc 746
>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes, complete cds Length = 65979 Score = 125 bits (63), Expect = 1e-25 Identities = 99/111 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 36820 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 36879 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccg 243 || ||||||||||||||||||||| | |||||||| || |||||||||| Sbjct: 36880 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccg 36930 Score = 121 bits (61), Expect = 2e-24 Identities = 97/109 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 15170 cgatctagtatcgaatggacggcacctccgcgttcagcacacgtacagctcgacgatgat 15229 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctc 241 || ||||||||||||||||||||| | |||||||| || |||||||| Sbjct: 15230 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctc 15278 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| | ||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 64806 cgatctagtgccgaacgaacggcacctccgcgttcagcacacgtacagctcgacgatgat 64747 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || |||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 64746 ctcaaccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 64691 Score = 105 bits (53), Expect = 1e-19 Identities = 77/85 (90%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||||||||||| || ||||||||||||||| ||||| |||||| Sbjct: 34789 cgatctagtgccgaacggacggcacctccggtttcagcacacgtacagctcgacgatgat 34848 Query: 193 gtccgccttcttgatccagcaagag 217 || ||||||||||||||||||||| Sbjct: 34849 ctcagccttcttgatccagcaagag 34873 Score = 103 bits (52), Expect = 4e-19 Identities = 85/96 (88%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| |||| |||||| ||||||||||||||||||| ||||| |||||| Sbjct: 24251 cgatctagtaccgaacggacagcacctccgcgttcagcacacgtacagctcgacgatgat 24310 Query: 193 gtccgccttcttgatccagcaagaggggcggagagg 228 || |||||||||||||||||| || | |||||||| Sbjct: 24311 ctcggccttcttgatccagcaaaagagacggagagg 24346
>emb|Z17327.1|HVBARE1 H.vulgare DNA for BARE-1 copia-like retroelement Length = 13271 Score = 121 bits (61), Expect = 2e-24 Identities = 103/117 (88%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||||||||||||||| ||||| ||||| ||||||||||||||||||| | ||| ||||| Sbjct: 12173 ccgatctagtgccgaacggacgacacctccgcgttcagcacacgtacagcacgacgatga 12114 Query: 192 tgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 | || |||||||| |||||||||||| | |||||||| || ||||||||||| |||| Sbjct: 12113 tctcggccttcttaatccagcaagagagacggagaggtagatgagttctccggcagc 12057 Score = 105 bits (53), Expect = 1e-19 Identities = 95/109 (87%) Strand = Plus / Minus Query: 135 atctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgt 194 ||||||||||||| ||||| ||||| ||||||||||||||||||||| ||| | |||| | Sbjct: 1924 atctagtgccgaacggacgacacctccgcgttcagcacacgtacaacacgatggtgatct 1865 Query: 195 ccgccttcttgatccagcaagaggggcggagaggcagctgagttctccg 243 | |||||| |||||||||||||| | |||| ||| || ||||||||||| Sbjct: 1864 cggccttcgtgatccagcaagagagacggaaaggtagatgagttctccg 1816
>gb|AF509771.1| Hordeum vulgare subsp. vulgare isolate NRG048 Rpg1 region, genomic sequence Length = 6190 Score = 119 bits (60), Expect = 7e-24 Identities = 102/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| ||||||||||||||||||| || || |||||| Sbjct: 1598 cgatctagtaccgaacggacggcacctccgcgttcagcacacgtacatcttgatgatgat 1539 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 1538 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 1483
>gb|U73173.1|HVU73173 Hordeum vulgare BARE-1 retrotransposon related-sequence Length = 4198 Score = 117 bits (59), Expect = 3e-23 Identities = 77/83 (92%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 |||||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||| Sbjct: 3356 cgatctagcgccgaacggacggcacctccgcgttcagcacacgtacaactcgacgatgat 3415 Query: 193 gtccgccttcttgatccagcaag 215 || ||||||||||||||||||| Sbjct: 3416 ctcggccttcttgatccagcaag 3438 Score = 103 bits (52), Expect = 4e-19 Identities = 76/84 (90%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||| ||||| Sbjct: 845 ccgatctagcaccgaatggacgacacctccgcgttcagcacacgtacagctcgacgatga 786 Query: 192 tgtccgccttcttgatccagcaag 215 | || ||||||||||||||||||| Sbjct: 785 tctcggccttcttgatccagcaag 762 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 cggttgatgtagtcgaacatcttc 63 ||||||||||||| |||||||||| Sbjct: 3278 cggttgatgtagtggaacatcttc 3301
>emb|Y18773.2|HROY18773 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSB) Length = 1901 Score = 115 bits (58), Expect = 1e-22 Identities = 89/98 (90%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||| || || Sbjct: 1604 ccgatctagcaccgaacggacggcacctccgcgttcagcacacgtacagctcgatgacga 1545 Query: 192 tgtccgccttcttgatccagcaagaggg-gcggagagg 228 | |||||||||||||||||||||||||| ||||||||| Sbjct: 1544 tctccgccttcttgatccagcaagagggagcggagagg 1507 Score = 105 bits (53), Expect = 1e-19 Identities = 113/132 (85%), Gaps = 2/132 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgtatat--aatgcggttgatgtagtcgaacatct 61 ||||||||||||||||||| |||||||| || || ||||||||||||||||||| ||| Sbjct: 1802 acccttgtagatcgctaagcggaagcgtttaagaaacgcggttgatgtagtcgaacgtct 1743 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtcccatgatcccatc 121 |||| ||||||||||| | ||| ||||||||||||||||||||| | ||||| ||| Sbjct: 1742 tcgcgatccaaatcgccaagcatcccgcgatcccatcacgatccgtctcgcgatccaatc 1683 Query: 122 acaatccatccc 133 || ||||||||| Sbjct: 1682 acgatccatccc 1671
>emb|Y18771.2|HVUY18771 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULE) Length = 1812 Score = 113 bits (57), Expect = 4e-22 Identities = 75/81 (92%) Strand = Plus / Minus Query: 135 atctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgt 194 ||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| | Sbjct: 1586 atctagtgccgaacggacggcacctccgcgttcagcacacgtacagctcgacgatgatct 1527 Query: 195 ccgccttcttgatccagcaag 215 | ||||||||||||||||||| Sbjct: 1526 cggccttcttgatccagcaag 1506
>emb|Y18769.2|HVUY18769 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULC) Length = 1830 Score = 113 bits (57), Expect = 4e-22 Identities = 102/117 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||||||||| ||| ||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 1625 cgatctagtgccgaacggatggcacctccgcgttcagcacacgtacagctcgacgatgat 1566 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagca 249 || |||||||||||||| |||||| | |||||||| || ||||||| || ||||| Sbjct: 1565 ctcggccttcttgatccaacaagagagacggagaggtagaagagttcttcggcagca 1509
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||| ||||| |||||||||||||||||| ||||| |||||| Sbjct: 48227 cgatctagtaccgaacggacgacacctcggcgttcagcacacgtacagctcgacgatgat 48286 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | |||||||| || |||||||||| |||| Sbjct: 48287 ctcggccttcttgatccagcaagagagacggagaggtagaagagttctccggcagc 48342 Score = 103 bits (52), Expect = 4e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 149 ggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtccgccttcttgatc 208 ||||||||||| |||||||||||||||| || ||||| |||||| || |||||||||||| Sbjct: 55352 ggacggcacctccgcgttcagcacacgtgcagctcgacgatgatctcggccttcttgatc 55411 Query: 209 cagcaagaggggcggagaggcagctgagttctccgacagc 248 ||||||||| | |||||||| || |||||||||| |||| Sbjct: 55412 cagcaagagagacggagaggtagaagagttctccggcagc 55451
>gb|DQ249273.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC 631P8, complete sequence Length = 101158 Score = 111 bits (56), Expect = 2e-21 Identities = 86/96 (89%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||||||||| |||||| |||||||||||| ||||| |||||| Sbjct: 33161 cgatctagtaccgaacggacggcacctccgcgtttagcacacgtacagctcgacgatgat 33220 Query: 193 gtccgccttcttgatccagcaagaggggcggagagg 228 || ||||||||||||||||||||| | |||||||| Sbjct: 33221 ctcggccttcttgatccagcaagagagacggagagg 33256
>emb|Y18768.2|HVUY18768 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULB) Length = 1736 Score = 111 bits (56), Expect = 2e-21 Identities = 101/116 (87%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||||| ||||| ||||||||||||||||||| ||||| |||||| Sbjct: 1533 cgatctagtaccgaacggacgacacctccgcgttcagcacacgtacagctcgacgatgat 1474 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | | |||||| || |||||||||| |||| Sbjct: 1473 ctcggccttcttgatccagcaagagagacagagaggtagaagagttctccggcagc 1418
>emb|Y18784.2|HPUY18784 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSB) Length = 1792 Score = 109 bits (55), Expect = 6e-21 Identities = 119/139 (85%), Gaps = 1/139 (0%) Strand = Plus / Minus Query: 104 ccgtcccatgatcccatcacaatccatcccgatctagtgccgaatggacggcacctacgc 163 ||||||| ||||| ||||| |||||||||||||||| ||| || || ||||||| || Sbjct: 1613 ccgtcccgcgatccaatcacgatccatcccgatctagcgccaaacagatggcacctccgt 1554 Query: 164 gttcagcacacgtacaactcgaggatgatgtccgccttcttgatccagcaaga-ggggcg 222 |||||||||| ||||| ||||| || ||| ||||||||||||||||||||||| |||||| Sbjct: 1553 gttcagcacatgtacagctcgatgacgatctccgccttcttgatccagcaagagggggcg 1494 Query: 223 gagaggcagctgagttctc 241 |||||| || |||| |||| Sbjct: 1493 gagaggtagatgagatctc 1475 Score = 89.7 bits (45), Expect = 6e-15 Identities = 95/109 (87%), Gaps = 2/109 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaag-gggaagcgtatataat-gcggttgatgtagtcgaacatct 61 ||||||||||||||||||| ||||||||| |||| | ||||||||||||||||| ||| Sbjct: 1692 acccttgtagatcgctaagcgggaagcgttaataaacgtggttgatgtagtcgaacgtct 1633 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtccc 110 |||| |||||||||||| ||||| ||||||| |||||||||| |||| Sbjct: 1632 tcgcgatccaaatcgcaagccgtcccgcgatccaatcacgatccatccc 1584
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 103 bits (52), Expect = 4e-19 Identities = 100/116 (86%) Strand = Plus / Plus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||| | ||||||||||| ||||||||||||||||||| ||||| |||||| Sbjct: 65569 cgatctagtaccggacggacggcacctccgcgttcagcacacgtacagctcgacgatgat 65628 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || |||||||||||||||||||| | | |||||| || |||||||||| |||| Sbjct: 65629 ctcaaccttcttgatccagcaagagagacagagaggtagaagagttctccggcagc 65684
>emb|Y18779.2|HMAY18779 Hordeum marinum BARE-1 long terminal repeat DNA (HMARD) Length = 1968 Score = 101 bits (51), Expect = 2e-18 Identities = 110/127 (86%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaagg-ggaagcgtatataat-gcggttgatgtagtcgaacatct 61 ||||||||||||||||||| |||||||| | || ||||||| ||||||||||||||| Sbjct: 1864 acccttgtagatcgctaagcaggaagcgttaagaaacgcggttggtgtagtcgaacatct 1805 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtcccatgatcccatc 121 |||| ||||||||||| | ||||| |||||| |||||||||||||||| ||||||||| Sbjct: 1804 tcgcgatccaaatcgccgagcgtcccgcgatctcatcacgatccgtcccgcgatcccatc 1745 Query: 122 acaatcc 128 || |||| Sbjct: 1744 acgatcc 1738 Score = 71.9 bits (36), Expect = 1e-09 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtaca-actcgaggatg 190 ||||||||| |||||| ||||||||||| |||||||||||||||| || || || || | Sbjct: 1618 ccgatctagcgccgaacggacggcacctccgcgttcagcacacgtgcagccttgatgacg 1559 Query: 191 atgtccgccttcttgatccagcaagagg 218 || ||| || |||||||||||||||||| Sbjct: 1558 atctccaccgtcttgatccagcaagagg 1531 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 82 cgtcctgcgatcccatcacgatccgtcc 109 ||||| |||||||||||||||||||||| Sbjct: 1761 cgtcccgcgatcccatcacgatccgtcc 1734 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Minus Query: 82 cgtcctgcgatcccatcacgatccgtc 108 |||||||||||| |||||||||||||| Sbjct: 1738 cgtcctgcgatctcatcacgatccgtc 1712 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 308 aaaaccgatctagaggagaaac 329 |||||||||||||||||||||| Sbjct: 1436 aaaaccgatctagaggagaaac 1415
>emb|Y18785.2|HPUY18785 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSC) Length = 1902 Score = 99.6 bits (50), Expect = 6e-18 Identities = 87/98 (88%), Gaps = 1/98 (1%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 |||| |||| |||||| ||||||||||| |||||| |||||||||||| ||||| || | Sbjct: 1603 ccgacctagcgccgaacggacggcacctccgcgtttagcacacgtacagctcgatgaaaa 1544 Query: 192 tgtccgccttcttgatccagcaagaggg-gcggagagg 228 | |||||||||||||||||||||||||| ||||||||| Sbjct: 1543 tctccgccttcttgatccagcaagagggagcggagagg 1506 Score = 79.8 bits (40), Expect = 6e-12 Identities = 90/104 (86%), Gaps = 2/104 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaagg-ggaagcgtatataat-gcggttgatgtagtcgaacatct 61 ||||||||||||||||||| |||||||| | || ||||| |||||||| |||||||| Sbjct: 1802 acccttgtagatcgctaagcaggaagcgttaagaaacgcggtggatgtagttgaacatct 1743 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatcc 105 |||||||||||||||| | ||||| ||||||||||| |||||| Sbjct: 1742 tcgcaatccaaatcgccgagcgtcccgcgatcccatcccgatcc 1699 Score = 48.1 bits (24), Expect = 0.020 Identities = 30/32 (93%) Strand = Plus / Minus Query: 91 atcccatcacgatccgtcccatgatcccatca 122 |||| ||| ||||||||||||||||||||||| Sbjct: 1690 atccaatctcgatccgtcccatgatcccatca 1659
>emb|AJ582609.1|HEU582609 Hordeum euclaston retrotransposon BARE1 long terminal repeat DNA, clone HEUCD Length = 1951 Score = 97.6 bits (49), Expect = 2e-17 Identities = 79/89 (88%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||| |||||| |||||||||| ||||||||||||||||| | ||||| || || Sbjct: 1605 ccgatctagcgccgaacagacggcacctccgcgttcagcacacgtatagctcgatgaaga 1546 Query: 192 tgtccgccttcttgatccagcaagagggg 220 | ||||||||||||||||| ||||||||| Sbjct: 1545 tctccgccttcttgatccaacaagagggg 1517 Score = 91.7 bits (46), Expect = 1e-15 Identities = 92/106 (86%), Gaps = 1/106 (0%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgtatataat-gcggttgatgtagtcgaacatctt 62 |||||| |||||||||||| |||||||| | || ||||||||||||||||||| |||| Sbjct: 1849 acccttatagatcgctaagcggaagcgttaagaaacgcggttgatgtagtcgaacgtctt 1790 Query: 63 cgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtc 108 ||| || |||||||| | ||||| ||||||||||||||||||||| Sbjct: 1789 cgcgattcaaatcgccgagcgtcccgcgatcccatcacgatccgtc 1744 Score = 44.1 bits (22), Expect = 0.31 Identities = 34/38 (89%) Strand = Plus / Minus Query: 91 atcccatcacgatccgtcccatgatcccatcacaatcc 128 |||| ||||||||||||||| |||| ||||||| |||| Sbjct: 1738 atccaatcacgatccgtcccgtgattccatcacgatcc 1701
>emb|Y18775.2|HROY18775 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSD) Length = 1858 Score = 97.6 bits (49), Expect = 2e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtcc 196 ||||||||||| | ||||||||| |||||||| |||||||||| ||||| |||||| || Sbjct: 1616 ctagtgccgaacgtacggcacctccgcgttcaacacacgtacagctcgacgatgatctcg 1557 Query: 197 gccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagca 249 |||||||||||||| |||||| | |||||||| || ||||||| || ||||| Sbjct: 1556 gccttcttgatccaacaagagagacggagaggtagaagagttcttcggcagca 1504 Score = 63.9 bits (32), Expect = 3e-07 Identities = 66/76 (86%), Gaps = 1/76 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgtatataat-gcggttgatgtagtcgaacatctt 62 ||||||||||||||||||| | |||||| | || ||||||||||||||||||| ||| Sbjct: 1758 acccttgtagatcgctaagcgaaagcgttaagaaacgcggttgatgtagtcgaacgtctc 1699 Query: 63 cgcaatccaaatcgca 78 ||| |||||||||||| Sbjct: 1698 cgcgatccaaatcgca 1683 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 42 gttgatgtagtcgaacatcttcgcaatccaaatcgca 78 |||||||||||||||| ||| ||| |||||||||||| Sbjct: 1678 gttgatgtagtcgaacgtctccgcgatccaaatcgca 1642
>emb|Y18772.2|HROY18772 Hordeum roshevitzii BARE-1 long terminal repeat DNA (HROSA) Length = 1740 Score = 97.6 bits (49), Expect = 2e-17 Identities = 99/113 (87%), Gaps = 2/113 (1%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtcc 196 ||||||||||| ||||| ||||| |||||||| |||||||||| ||||| || ||| ||| Sbjct: 1539 ctagtgccgaacggacgacacctccgcgttca-cacacgtacagctcgatgacgatctcc 1481 Query: 197 gccttcttgatccagcaagaggg-gcggagaggcagctgagttctccgacagc 248 |||||||||||||||| |||||| ||||||||| || |||||||||| |||| Sbjct: 1480 gccttcttgatccagcgagagggagcggagaggtagaagagttctccggcagc 1428 Score = 95.6 bits (48), Expect = 1e-16 Identities = 88/100 (88%), Gaps = 1/100 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgtatataat-gcggttgatgtagtcgaacatctt 62 ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||| Sbjct: 1640 acccttgtagatcgctaagcggaagcgttaataaacgcggttgatgtagtcgaacatctc 1581 Query: 63 cgcaatccaaatcgcagttcgtcctgcgatcccatcacga 102 ||| |||||||||||| |||||| |||||| ||||||| Sbjct: 1580 cgcgatccaaatcgcaagtcgtccctcgatccgatcacga 1541
>emb|Y18767.2|HVUY18767 Hordeum vulgare BARE-1 long terminal repeat DNA (HVULA) Length = 1807 Score = 95.6 bits (48), Expect = 1e-16 Identities = 99/116 (85%) Strand = Plus / Minus Query: 133 cgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgat 192 ||||||||| ||||| ||| ||||||| || ||||||| |||||||| ||||| |||||| Sbjct: 1603 cgatctagtaccgaacggatggcacctccgtgttcagctcacgtacagctcgacgatgat 1544 Query: 193 gtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 || ||||||||||||||||||||| | ||||||| || |||||||||| |||| Sbjct: 1543 ctcagccttcttgatccagcaagagagatggagaggtagaagagttctccggcagc 1488
>emb|AJ582535.1|HVU582535 Hordeum vulgare BARE-1 long terminal repeat HvLea-22 mRNA Length = 748 Score = 81.8 bits (41), Expect = 1e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 748 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 689 Query: 236 gttctccgacagc 248 ||||||||||||| Sbjct: 688 gttctccgacagc 676
>emb|AJ582533.1|HVU582533 Hordeum vulgare BARE-1 long terminal repeat HvLea-20 mRNA Length = 727 Score = 81.8 bits (41), Expect = 1e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 727 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 668 Query: 236 gttctccgacagc 248 ||||||||||||| Sbjct: 667 gttctccgacagc 655
>emb|AJ582532.1|HVU582532 Hordeum vulgare BARE-1 long terminal repeat HvLea-19 mRNA Length = 746 Score = 81.8 bits (41), Expect = 1e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 746 tacagctcgatgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 687 Query: 236 gttctccgacagc 248 ||||||||||||| Sbjct: 686 gttctccgacagc 674
>emb|AJ582527.1|HVU582527 Hordeum vulgare BARE-1 long terminal repeat HvLea-1 mRNA Length = 748 Score = 81.8 bits (41), Expect = 1e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 748 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 689 Query: 236 gttctccgacagc 248 ||||||||||||| Sbjct: 688 gttctccgacagc 676
>emb|Y18776.2|HMAY18776 Hordeum marinum BARE-1 long terminal repeat DNA (HMARA) Length = 1879 Score = 81.8 bits (41), Expect = 1e-12 Identities = 112/133 (84%), Gaps = 2/133 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaag-gggaagcgtata-taatgcggttgatgtagtcgaacatct 61 ||||||||||||||||||| ||||||||| | ||||||||||| ||||||| ||| | | Sbjct: 1780 acccttgtagatcgctaagcgggaagcgtcaagtaatgcggttggtgtagtcaaactttt 1721 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtcccatgatcccatc 121 |||| ||||||||||| | |||| |||||| ||||||| ||||||| ||||| ||| Sbjct: 1720 tcgcgatccaaatcgccgagtgtcccacgatccaatcacgaaccgtcccgcgatccaatc 1661 Query: 122 acaatccatcccg 134 || |||||||||| Sbjct: 1660 acgatccatcccg 1648 Score = 65.9 bits (33), Expect = 9e-08 Identities = 66/77 (85%) Strand = Plus / Minus Query: 142 gccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtccgcctt 201 |||||| ||||||||| | |||||||||||||||| ||||| || |||||| ||| || | Sbjct: 1572 gccgaacggacggcacatccgcgttcagcacacgtgcaacttgatgatgatctccaccgt 1513 Query: 202 cttgatccagcaagagg 218 || |||||| ||||||| Sbjct: 1512 ctcgatccatcaagagg 1496
>emb|AJ582608.1|HMA582608 Hordeum marinum retrotransposon BARE1 long terminal repeat DNA, clone HMARE Length = 1556 Score = 79.8 bits (40), Expect = 6e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||| |||| | | ||| ||||| |||||||||||||||||| ||||| || || Sbjct: 1234 ccgatctagcgccgtacgaacgacacctccgcgttcagcacacgtacggctcgatgacga 1175 Query: 192 tgtccgccttcttgatccagcaagaggg 219 | |||||| ||||||||||||||||||| Sbjct: 1174 tctccgccgtcttgatccagcaagaggg 1147 Score = 54.0 bits (27), Expect = 3e-04 Identities = 104/127 (81%), Gaps = 2/127 (1%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaag-gggaagcgtatataat-gcggttgatgtagtcgaacatct 61 |||||||| |||||||||| ||||||||| | || ||||||| | ||||||||| | | Sbjct: 1456 acccttgtggatcgctaagcgggaagcgttaagaaacgcggttggtatagtcgaacgtgt 1397 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtcccatgatcccatc 121 |||| ||||||||||| | ||||| | |||| ||||| |||||||||| ||||| ||| Sbjct: 1396 tcgcgatccaaatcgccgagcgtcccgtgatctcatcatgatccgtcccgcgatccaatc 1337 Query: 122 acaatcc 128 || |||| Sbjct: 1336 acgatcc 1330 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 82 cgtcctgcgatcccatcacgatccgtccc 110 |||||||||| | |||||||||||||||| Sbjct: 1330 cgtcctgcgaactcatcacgatccgtccc 1302 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 82 cgtcctgcgatcccatcacgatccgtcc 109 ||||| ||||||| |||||||||||||| Sbjct: 1353 cgtcccgcgatccaatcacgatccgtcc 1326
>emb|AJ582545.1|HVU582545 Hordeum vulgare BARE-1 long terminal repeat HvCal-2 mRNA Length = 751 Score = 79.8 bits (40), Expect = 6e-12 Identities = 64/72 (88%) Strand = Plus / Minus Query: 170 cacacgtacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggc 229 |||||||||| ||||| |||||| || ||||||||||||||||||||| | |||||||| Sbjct: 751 cacacgtacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggt 692 Query: 230 agctgagttctc 241 || ||||||||| Sbjct: 691 agatgagttctc 680
>emb|Y18781.2|HEUY18781 Hordeum euclaston BARE-1 long terminal repeat DNA (HEUCB) Length = 1782 Score = 77.8 bits (39), Expect = 2e-11 Identities = 73/83 (87%), Gaps = 1/83 (1%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgtcc 196 |||| |||||| | ||||||||| |||||| |||||||||||| ||||| |||||| ||| Sbjct: 1583 ctagcgccgaacgaacggcacctccgcgtt-agcacacgtacagctcgatgatgatctcc 1525 Query: 197 gccttcttgatccagcaagaggg 219 || | |||||||||||||||||| Sbjct: 1524 gcatgcttgatccagcaagaggg 1502 Score = 56.0 bits (28), Expect = 8e-05 Identities = 63/72 (87%), Gaps = 2/72 (2%) Strand = Plus / Minus Query: 8 ttgtagatcgctaag-gggaagcgtatataat-gcggttgatgtagtcgaacatcttcgc 65 ||||||||||||||| ||||||||| | || ||||||||||||||| ||| ||||||| Sbjct: 1681 ttgtagatcgctaagcgggaagcgttaagaaacgcggttgatgtagtcaaacgtcttcgc 1622 Query: 66 aatccaaatcgc 77 ||||||||||| Sbjct: 1621 gatccaaatcgc 1610
>emb|Y18777.2|HMAY18777 Hordeum marinum BARE-1 long terminal repeat DNA (HMARB) Length = 1975 Score = 77.8 bits (39), Expect = 2e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||| |||||| ||||||||||| |||||||||||||||| || || || || || Sbjct: 1583 ccgatctagcgccgaacggacggcacctccgcgttcagcacacgtgcagcttgatgacga 1524 Query: 192 tgtccgccttcttgatccagcaagagg 218 | ||| | |||||||||||||||||| Sbjct: 1523 tctccactgtcttgatccagcaagagg 1497 Score = 67.9 bits (34), Expect = 2e-08 Identities = 79/94 (84%) Strand = Plus / Minus Query: 41 ggttgatgtagtcgaacatcttcgcaatccaaatcgcagttcgtcctgcgatcccatcac 100 ||||| ||||||||||| ||||||| ||||||||||| | | ||| ||||| ||||| Sbjct: 1835 ggttggtgtagtcgaacgtcttcgcgatccaaatcgccgagcatcccacgatctcatcat 1776 Query: 101 gatccgtcccatgatcccatcacaatccatcccg 134 |||||||||||||| | |||||| |||| ||||| Sbjct: 1775 gatccgtcccatgaactcatcacgatccgtcccg 1742
>emb|AJ582555.1|HVU582555 Hordeum vulgare BARE-1 long terminal repeat HvCal-13 mRNA Length = 725 Score = 75.8 bits (38), Expect = 9e-11 Identities = 65/74 (87%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 725 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 666 Query: 236 gttctccgacagca 249 |||||||| ||||| Sbjct: 665 gttctccggcagca 652
>emb|AJ582560.1|HVU582560 Hordeum vulgare BARE-1 long terminal repeat HvCal-19 mRNA Length = 729 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 729 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 670 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 669 gttctccggcagc 657
>emb|AJ582559.1|HVU582559 Hordeum vulgare BARE-1 long terminal repeat HvCal-17 mRNA Length = 748 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 748 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 689 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 688 gttctccggcagc 676
>emb|AJ582546.1|HVU582546 Hordeum vulgare BARE-1 long terminal repeat HvCal-3 mRNA Length = 756 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || ||| Sbjct: 756 tacacctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagatga 697 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 696 gttctccggcagc 684
>emb|AJ582529.1|HVU582529 Hordeum vulgare BARE-1 long terminal repeat HvLea-9 mRNA Length = 746 Score = 73.8 bits (37), Expect = 4e-10 Identities = 64/73 (87%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||||||||| |||||| || ||||||||||||||||||||| | |||||||| || || Sbjct: 746 tacaactcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagaaga 687 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 686 gttctccggcagc 674
>emb|AJ582542.1|HVU582542 Hordeum vulgare BARE-1 long terminal repeat HvLea-31 mRNA Length = 746 Score = 71.9 bits (36), Expect = 1e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 197 gccttcttgatccagcaagaggggcggagaggcagctgagttctccgacagc 248 ||||||||||||||||||||| | |||||||| || |||||||||||||||| Sbjct: 726 gccttcttgatccagcaagagagccggagaggtagatgagttctccgacagc 675
>emb|Y18780.2|HEUY18780 Hordeum euclaston BARE-1 long terminal repeat DNA (HEUCA) Length = 1673 Score = 71.9 bits (36), Expect = 1e-09 Identities = 93/112 (83%) Strand = Plus / Minus Query: 130 tcccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggat 189 ||||||||||| ||||| ||||| ||||| ||| ||||||||||||| | |||| || Sbjct: 1479 tcccgatctagcaccgaacggacgacacctccgcattcagcacacgtatagttcgatgac 1420 Query: 190 gatgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctc 241 ||| |||||||||||||||| | |||||| ||| ||||| || || |||||| Sbjct: 1419 gatctccgccttcttgatcctgtaagaggagcgaagaggtagatgggttctc 1368
>emb|Y18783.2|HPUY18783 Hordeum pusillum BARE-1 long terminal repeat DNA (HPUSA) Length = 1779 Score = 69.9 bits (35), Expect = 5e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 113 gatcccatcacaatccatcccgatctagtgccgaatggacggcacctacgcgttcagcac 172 ||||| ||||| || | ||||||||||| |||||| |||||||| || |||||||||||| Sbjct: 1591 gatccaatcacgattcgtcccgatctagcgccgaacggacggcaacttcgcgttcagcac 1532 Query: 173 acgtaca 179 ||||||| Sbjct: 1531 acgtaca 1525 Score = 65.9 bits (33), Expect = 9e-08 Identities = 93/109 (85%), Gaps = 3/109 (2%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaagg-ggaagcgtatataat-gcggttgatgtagtcgaacatct 61 ||||||||||||||||||| |||||||| | || |||| ||||||||||||| ||| Sbjct: 1678 acccttgtagatcgctaagcaggaagcgttaagaaacgcgggtgatgtagtcgaag-tct 1620 Query: 62 tcgcaatccaaatcgcagttcgtcctgcgatcccatcacgatccgtccc 110 || | |||||||||||| | ||||||||||||| |||||||| |||||| Sbjct: 1619 tcccgatccaaatcgcaatccgtcctgcgatccaatcacgattcgtccc 1571
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence Length = 285506 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatg 190 ||||||||||| ||||||||||| |||||||| |||||||||| ||||| |||| Sbjct: 166389 ctagtgccgaacggacggcacctccgcgttcaacacacgtacagctcgacgatg 166336 Score = 67.9 bits (34), Expect = 2e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatg 190 ||||||||||| ||||||||||| |||||||| |||||||||| ||||| |||| Sbjct: 159466 ctagtgccgaacggacggcacctccgcgttcaacacacgtacagctcgacgatg 159413 Score = 63.9 bits (32), Expect = 3e-07 Identities = 72/84 (85%), Gaps = 1/84 (1%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||||||| || ||||| | ||| |||||||| |||||||||| | || ||||| Sbjct: 225049 ccgatctagtgccaaacggacgacgcctccgcgttcaacacacgtacatcccggggatg- 225107 Query: 192 tgtccgccttcttgatccagcaag 215 | ||| |||||||||||||||||| Sbjct: 225108 tatcctccttcttgatccagcaag 225131 Score = 61.9 bits (31), Expect = 1e-06 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand = Plus / Plus Query: 135 atctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatgatgt 194 |||||||||| |||||||| | ||| |||||||| |||||||||| | || ||||| | | Sbjct: 231890 atctagtgccaaatggacgacgcctccgcgttcaacacacgtacagcccggggatg-tct 231948 Query: 195 ccgccttcttgatccagca 213 || |||||||||||||||| Sbjct: 231949 cctccttcttgatccagca 231967 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 166473 acccttgtagatcgctaagcggaagcgt 166446 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 159550 acccttgtagatcgctaagcggaagcgt 159523 Score = 44.1 bits (22), Expect = 0.31 Identities = 34/38 (89%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacac 174 ||||||||||| |||||||||| |||||||| ||||| Sbjct: 136545 ctagtgccgaacggacggcacccccgcgttcaacacac 136508 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttca 168 ||||||||| |||||||||||||| ||| ||||||| Sbjct: 218226 ccgatctagcgccgaatggacggcgcctctgcgttca 218262 Score = 42.1 bits (21), Expect = 1.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcaca 173 |||| |||||| ||||||||||| |||||||| |||| Sbjct: 129538 ctagcgccgaacggacggcacctccgcgttcaacaca 129502
>gb|AY494981.1| Triticum turgidum A genome HMW glutenin A gene locus, sequence Length = 307015 Score = 65.9 bits (33), Expect = 9e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcga 185 ||||||||||| ||||||||||| |||||||| |||||||||| ||||| Sbjct: 61145 ctagtgccgaacggacggcacctccgcgttcaacacacgtacagctcga 61097 Score = 65.9 bits (33), Expect = 9e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcga 185 ||||||||||| ||||||||||| |||||||| |||||||||| ||||| Sbjct: 54270 ctagtgccgaacggacggcacctccgcgttcaacacacgtacagctcga 54222 Score = 63.9 bits (32), Expect = 3e-07 Identities = 72/84 (85%), Gaps = 1/84 (1%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcgaggatga 191 ||||||||| |||||| ||||||| ||| |||||||| |||||||||| | || ||| | Sbjct: 8492 ccgatctagcgccgaacggacggcgcctccgcgttcaacacacgtacatcccggggacg- 8434 Query: 192 tgtccgccttcttgatccagcaag 215 | ||| |||||||||||||||||| Sbjct: 8433 tctcctccttcttgatccagcaag 8410 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtac 178 |||| |||||| ||||||||||| |||||||| ||||||||| Sbjct: 41385 ctagcgccgaacggacggcacctccgcgttcaacacacgtac 41344 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 54354 acccttgtagatcgctaagcggaagcgt 54327 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 |||||||||||||||||| |||||||| Sbjct: 61229 acccttgtagatcgctaatcggaagcgt 61202 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||| ||||||||||| |||||||| Sbjct: 8574 acccttgaagatcgctaagcggaagcgt 8547
>emb|AJ582557.1|HVU582557 Hordeum vulgare BARE-1 long terminal repeat HvCal-15 mRNA Length = 754 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || || Sbjct: 754 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagaaga 695 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 694 gttctccggcagc 682
>emb|AJ582554.1|HVU582554 Hordeum vulgare BARE-1 long terminal repeat HvCal-12 mRNA Length = 754 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || || Sbjct: 754 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagaaga 695 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 694 gttctccggcagc 682
>emb|AJ582553.1|HVU582553 Hordeum vulgare BARE-1 long terminal repeat HvCal-11 mRNA Length = 760 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | | |||||| || ||| Sbjct: 760 tacagctcgacgatgatctcggccttcttgatccagcaagagagacagagaggtagatga 701 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 700 gttctccggcagc 688
>emb|AJ582548.1|HVU582548 Hordeum vulgare BARE-1 long terminal repeat HvCal-5 mRNA Length = 740 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || || Sbjct: 740 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagaaga 681 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 680 gttctccggcagc 668
>emb|AJ582544.1|HVU582544 Hordeum vulgare BARE-1 long terminal repeat HvCal-1 mRNA Length = 750 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| || || Sbjct: 750 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagaggtagaaga 691 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 690 gttctccggcagc 678
>emb|AJ582541.1|HVU582541 Hordeum vulgare BARE-1 long terminal repeat HvLea-30 mRNA Length = 746 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 ||||| |||| |||||| || ||||||||||||||||||||| | ||||||| || ||| Sbjct: 746 tacaaatcgacgatgatctcggccttcttgatccagcaagagagatggagaggtagatga 687 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 686 gttctccggcagc 674
>emb|AJ582540.1|HVU582540 Hordeum vulgare BARE-1 long terminal repeat HvLea-29 mRNA Length = 757 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||| ||||| | |||||||| || ||| Sbjct: 757 tacagctcgacgatgatctcggccttcttgatccagaaagagagacggagaggtaggtga 698 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 697 gttctccggcagc 685
>emb|AJ582537.1|HVU582537 Hordeum vulgare BARE-1 long terminal repeat HvLea-25 mRNA Length = 745 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 ||||| |||| |||||| || ||||||||||||||||||||| | ||||||| || ||| Sbjct: 745 tacaaatcgacgatgatctcggccttcttgatccagcaagagagatggagaggtagatga 686 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 685 gttctccggcagc 673
>emb|AJ582536.1|HVU582536 Hordeum vulgare BARE-1 long terminal repeat HvLea-24 mRNA Length = 748 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 ||||| |||| |||||| || ||||||||||||||||||||| | ||||||| || ||| Sbjct: 748 tacaaatcgacgatgatctcggccttcttgatccagcaagagagatggagaggtagatga 689 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 688 gttctccggcagc 676
>emb|AJ582534.1|HVU582534 Hordeum vulgare BARE-1 long terminal repeat HvLea-21 mRNA Length = 731 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || |||||||||||| |||||||| | |||||||| || ||| Sbjct: 731 tacagctcgacgatgatctcggccttcttgatctagcaagagagacggagaggtagatga 672 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 671 gttctccggcagc 659
>emb|AJ582528.1|HVU582528 Hordeum vulgare BARE-1 long terminal repeat HvLea-4 mRNA Length = 730 Score = 65.9 bits (33), Expect = 9e-08 Identities = 63/73 (86%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || |||||||||||| |||||||| | |||||||| || ||| Sbjct: 730 tacagctcgacgatgatctcggccttcttgatctagcaagagagacggagaggtagatga 671 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 670 gttctccggcagc 658
>emb|X57168.1|TAWIS21AI T.aestivum Wis-2-1A retrotransposon-like element Length = 1755 Score = 65.9 bits (33), Expect = 9e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcga 185 ||||||||||| ||||||||||| |||||||| |||||||||| ||||| Sbjct: 1571 ctagtgccgaacggacggcacctccgcgttcaacacacgtacagctcga 1523 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 1655 acccttgtagatcgctaagcggaagcgt 1628
>emb|X05996.1|TAGLUIN2 Wheat Glu-Aly sublocus gene with Wis-2 insertion 3' end (2.0 kb Hind III fragment) Length = 1515 Score = 65.9 bits (33), Expect = 9e-08 Identities = 45/49 (91%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtacaactcga 185 ||||||||||| ||||||||||| |||||||| |||||||||| ||||| Sbjct: 279 ctagtgccgaacggacggcacctccgcgttcaacacacgtacagctcga 231 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 |||||||||||||||||| |||||||| Sbjct: 363 acccttgtagatcgctaatcggaagcgt 336
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 61.9 bits (31), Expect = 1e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtaca 179 ||||||||||||||||||||||| || ||||| |||||||||| Sbjct: 159640 ctagtgccgaatggacggcacctccgtgttcaacacacgtaca 159598 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 142 gccgaatggacggcacctacgcgttcagcacacgtac 178 |||||| ||||||||||| |||||||| ||||||||| Sbjct: 84741 gccgaacggacggcacctccgcgttcaacacacgtac 84705 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 142 gccgaatggacggcacctacgcgttcagcacacgtac 178 |||||| ||||||||||| |||||||| ||||||||| Sbjct: 77719 gccgaacggacggcacctccgcgttcaacacacgtac 77683 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 159724 acccttgtagatcgctaagcggaagcgt 159697
>emb|AJ582556.1|HVU582556 Hordeum vulgare BARE-1 long terminal repeat HvCal-14 mRNA Length = 751 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 187 gatgatgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgaca 246 |||||| || || |||||||||||||||||| | |||||||| || ||||||||||| || Sbjct: 740 gatgatctcggctttcttgatccagcaagagagacggagaggtagatgagttctccggca 681 Query: 247 gc 248 || Sbjct: 680 gc 679
>emb|AJ582551.1|HVU582551 Hordeum vulgare BARE-1 long terminal repeat HvCal-9 mRNA Length = 758 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||| ||||||||||||||| | |||||||| || || Sbjct: 758 tacagctcgacgatgatctcggcctttttgatccagcaagagagacggagaggtagaaga 699 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 698 gttctccggcagc 686
>emb|AJ582550.1|HVU582550 Hordeum vulgare BARE-1 long terminal repeat HvCal-7 mRNA Length = 745 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||| ||||||||||||||| | |||||||| || || Sbjct: 745 tacagctcgatgatgatctcggcctttttgatccagcaagagagacggagaggtagaaga 686 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 685 gttctccggcagc 673
>emb|AJ582549.1|HVU582549 Hordeum vulgare BARE-1 long terminal repeat HvCal-6 mRNA Length = 751 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || |||||||||||||||||| || | |||||||| || || Sbjct: 751 tacagctcgacgatgatctcggccttcttgatccagcaaaagagacggagaggtagaaga 692 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 691 gttctccggcagc 679
>emb|AJ582547.1|HVU582547 Hordeum vulgare BARE-1 long terminal repeat HvCal-4 mRNA Length = 746 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagagg 228 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| Sbjct: 746 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagagg 694
>emb|AJ582543.1|HVU582543 Hordeum vulgare BARE-1 long terminal repeat HvLea-32 mRNA Length = 748 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || || |||||||||||||||||| | |||||||| || || Sbjct: 748 tacagctcgacgatgatctcggctttcttgatccagcaagagagacggagaggtagaaga 689 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 688 gttctccggcagc 676
>emb|AJ582539.1|HVU582539 Hordeum vulgare BARE-1 long terminal repeat HvLea-28 mRNA Length = 747 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagagg 228 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| Sbjct: 747 tacagctcgacgatgatctcggccttcttgatccagcaagagagacggagagg 695
>emb|AJ582538.1|HVU582538 Hordeum vulgare BARE-1 long terminal repeat HvLea-26 mRNA Length = 721 Score = 58.0 bits (29), Expect = 2e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || |||||||||||| |||||||| | || ||||| || ||| Sbjct: 721 tacagctcgacgatgatctcggccttcttgatctagcaagagagacgaagaggtagatga 662 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 661 gttctccggcagc 649
>emb|AJ582531.1|HVU582531 Hordeum vulgare BARE-1 long terminal repeat HvLea-15 mRNA Length = 732 Score = 58.0 bits (29), Expect = 2e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 188 atgatgtccgccttcttgatccagcaagaggggcggagaggcagctgagttctccgacag 247 ||||| || |||||||||||| |||||||| | |||||||| || ||||||||||| ||| Sbjct: 720 atgatctcggccttcttgatctagcaagagagacggagaggtagatgagttctccggcag 661 Query: 248 c 248 | Sbjct: 660 c 660
>emb|AJ582530.1|HVU582530 Hordeum vulgare BARE-1 long terminal repeat HvLea-12 mRNA Length = 707 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagagg 228 |||| ||||| |||||| || ||||||||||||||||||||| | |||||||| Sbjct: 707 tacagctcgacgatgatctcagccttcttgatccagcaagagagacggagagg 655
>emb|AJ304467.2|TAE304467 Triticum aestivum putative transposon WIS 2-1A LTR Length = 510 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||||||||||||| ||||||||||| || ||| ||||||||| Sbjct: 191 ccgatctagtgccgaacggacggcacctccgagtttagcacacgt 147
>gb|U31173.1|ACU31173 Agropyron cristatum P genome repetitive DNA sequence Length = 377 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgta 177 ||||||||||| ||||||||||| |||||||| |||||||| Sbjct: 281 ctagtgccgaacggacggcacctccgcgttcaacacacgta 321
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 139 agtgccgaatggacggcacctacgcgttcagcacacgtac 178 ||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 93204 agtgccgaacggacggcacctccgcgttcaacacacgtac 93243 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 139 agtgccgaatggacggcacctacgcgttcagcacacgtac 178 ||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 86159 agtgccgaacggacggcacctccgcgttcaacacacgtac 86198 Score = 54.0 bits (27), Expect = 3e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 139 agtgccgaatggacggcacctacgcgttcagcacacgta 177 ||||||||| ||||||||||| |||||||| |||||||| Sbjct: 12036 agtgccgaacggacggcacctccgcgttcaacacacgta 11998
>gb|AF497474.1| Aegilops tauschii leucine-rich-like protein gene, partial cds; seed globulin (Glo-2) gene, complete cds; HMW-glutenin (Glu-Dty) gene, Glu-Dty-T2 allele, complete cds; and HMW-glutenin (HMW) gene, HMW-Dtx2 allele, complete cds Length = 102842 Score = 56.0 bits (28), Expect = 8e-05 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand = Plus / Minus Query: 151 acggcacctacgcgttcagcacacgtacaactcgaggatgatgtccgccttcttgatcca 210 ||||||||| || |||| |||||||| || ||||| || | | |||||||||| |||||| Sbjct: 39054 acggcacctccgagttctgcacacgttcagctcgatgacg-tctccgccttctcgatcca 38996 Query: 211 gcaagaggggcg 222 |||||||||||| Sbjct: 38995 gcaagaggggcg 38984 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 195 ccgccttcttgatccagcaagaggggcg 222 ||||||||| |||||||||||||||||| Sbjct: 32182 ccgccttctcgatccagcaagaggggcg 32155 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Plus Query: 39 gcggttgatgtagtcgaacatcttcgcaatccaa 72 ||||||||||||||||||| ||||| | |||||| Sbjct: 95741 gcggttgatgtagtcgaacgtcttcacgatccaa 95774
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 139 agtgccgaatggacggcacctacgcgttcagcacacgtac 178 ||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 76367 agtgccgaacggacggcacctccgcgttcaacacacgtac 76406 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 139 agtgccgaatggacggcacctacgcgttcagcacacgtac 178 ||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 58680 agtgccgaacggacggcacctccgcgttcaacacacgtac 58641 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 139 agtgccgaatggacggcacctacgcgttcagcacacgtac 178 ||||||||| ||||||||||| |||||||| ||||||||| Sbjct: 51644 agtgccgaacggacggcacctccgcgttcaacacacgtac 51605 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 139 agtgccgaatggacggcacctacgcgttcagcacacg 175 ||||||||| ||||||||||| |||||||| |||||| Sbjct: 83405 agtgccgaacggacggcacctccgcgttcaacacacg 83441
>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence Length = 111912 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtaca 179 |||| |||||| ||||||||||| |||||||| |||||||||| Sbjct: 20971 ctagcgccgaacggacggcacctccgcgttcaacacacgtaca 20929 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 39 gcggttgatgtagtcgaacatcttc 63 ||||||||||||||||||| ||||| Sbjct: 54989 gcggttgatgtagtcgaacttcttc 54965 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 39 gcggttgatgtagtcgaacatcttc 63 ||||||||||||||||||| ||||| Sbjct: 35955 gcggttgatgtagtcgaacttcttc 35931 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 cgccttcttgatccagcaaga 216 ||||||||||||||||||||| Sbjct: 35857 cgccttcttgatccagcaaga 35837 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cgccttcttgatccagcaag 215 |||||||||||||||||||| Sbjct: 54891 cgccttcttgatccagcaag 54872
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/70 (88%), Gaps = 3/70 (4%) Strand = Plus / Minus Query: 5 cccttgtagatcgctaaggggaagcgt-atat-aatgcggttgatgtagtcgaacatctt 62 |||||||||||||| ||| |||||||| |||| || ||||||||||||||||||| |||| Sbjct: 409803 cccttgtagatcgc-aagcggaagcgttatatcaacgcggttgatgtagtcgaacgtctt 409745 Query: 63 cgcaatccaa 72 | | |||||| Sbjct: 409744 cacgatccaa 409735 Score = 46.1 bits (23), Expect = 0.080 Identities = 26/27 (96%) Strand = Plus / Minus Query: 196 cgccttcttgatccagcaagaggggcg 222 |||||||| |||||||||||||||||| Sbjct: 409670 cgccttctcgatccagcaagaggggcg 409644 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Minus Query: 39 gcggttgatgtagtcgaacatcttcgcaatccaa 72 |||||||||||||| |||| ||||||| |||||| Sbjct: 7565 gcggttgatgtagttgaacgtcttcgcgatccaa 7532 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 39 gcggttgatgtagtcgaacatcttc 63 ||||||||||||||||||| ||||| Sbjct: 12915 gcggttgatgtagtcgaacttcttc 12891 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 cgccttcttgatccagcaag 215 |||||||||||||||||||| Sbjct: 12817 cgccttcttgatccagcaag 12798
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtac 178 |||| |||||| ||||||||||| |||||||| ||||||||| Sbjct: 50027 ctagcgccgaacggacggcacctccgcgttcaacacacgtac 50068 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtac 178 |||| |||||| ||||||||||| |||||||| ||||||||| Sbjct: 43392 ctagcgccgaacggacggcacctccgcgttcaacacacgtac 43433 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtac 178 |||| |||||| ||||||||||| |||||||| ||||||||| Sbjct: 40251 ctagcgccgaacggacggcacctccgcgttcaacacacgtac 40292 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Plus Query: 198 ccttcttgatccagcaagaggggcggagagg 228 |||||||||||||||||| |||| ||||||| Sbjct: 50087 ccttcttgatccagcaaggggggaggagagg 50117 Score = 46.1 bits (23), Expect = 0.080 Identities = 29/31 (93%) Strand = Plus / Plus Query: 198 ccttcttgatccagcaagaggggcggagagg 228 |||||||||||||||||| |||| ||||||| Sbjct: 43452 ccttcttgatccagcaaggggggaggagagg 43482 Score = 44.1 bits (22), Expect = 0.31 Identities = 37/42 (88%) Strand = Plus / Plus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtac 178 |||| |||||| ||||||||||| || ||||| ||||||||| Sbjct: 61442 ctagcgccgaacggacggcacctccgtgttcaacacacgtac 61483
>gb|AY663391.1| Triticum turgidum cultivar Langdon clone BAC 1156G16, complete sequence Length = 187012 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgtac 178 |||| |||||| ||||||||||| |||||||| ||||||||| Sbjct: 12529 ctagcgccgaacggacggcacctccgcgttcaacacacgtac 12570 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 cgccttcttgatccagcaaga 216 ||||||||||||||||||||| Sbjct: 91864 cgccttcttgatccagcaaga 91884 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||| ||| ||||||| ||| ||||| || ||||||||||||| Sbjct: 62966 ccgatcaagtaccgaatgcacgacacctccgagttcagcacacgt 63010 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 36 aatgcggttgatgtagtcgaacatcttc 63 ||||||||||||||||||| || ||||| Sbjct: 136776 aatgcggttgatgtagtcgtacgtcttc 136749 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 4 acccttgtagatcgctaaggggaagcgt 31 |||||||||||||| |||| |||||||| Sbjct: 87826 acccttgtagatcgttaagcggaagcgt 87853
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 142 gccgaatggacggcacctacgcgttcagcacacgtac 178 |||||| ||||||||||| |||||||| ||||||||| Sbjct: 122471 gccgaacggacggcacctccgcgttcaacacacgtac 122507 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Plus Query: 142 gccgaatggacggcacctacgcgttcagcacacgtac 178 |||||| ||||||||||| |||||||| ||||||||| Sbjct: 115476 gccgaacggacggcacctccgcgttcaacacacgtac 115512
>emb|AJ582558.1|HVU582558 Hordeum vulgare BARE-1 long terminal repeat HvCal-16 mRNA Length = 744 Score = 50.1 bits (25), Expect = 0.005 Identities = 61/73 (83%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||||||||||| | |||||| | || ||| Sbjct: 744 tacagctcgacgatgatctcggccttcttgatccagcaagcaagacggagaagtagatga 685 Query: 236 gttctccgacagc 248 |||||||| |||| Sbjct: 684 gttctccggcagc 672
>gb|AY951945.1| Triticum monococcum TmBAC 60J11 FR-Am2 locus, genomic sequence Length = 103866 Score = 50.1 bits (25), Expect = 0.005 Identities = 34/37 (91%) Strand = Plus / Minus Query: 142 gccgaatggacggcacctacgcgttcagcacacgtac 178 |||||| ||||||||||| |||||||| ||||||||| Sbjct: 81965 gccgaacggacggcacctccgcgttcaacacacgtac 81929 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Plus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 1834 acccttgtagatcgctaagcggaagcgt 1861 Score = 44.1 bits (22), Expect = 0.31 Identities = 34/38 (89%) Strand = Plus / Minus Query: 35 taatgcggttgatgtagtcgaacatcttcgcaatccaa 72 |||||||||||||||||||| || ||||| | |||||| Sbjct: 3837 taatgcggttgatgtagtcggacgtcttcacgatccaa 3800
>emb|AJ582561.1|HVU582561 Hordeum vulgare BARE-1 long terminal repeat HvCal-20 mRNA Length = 730 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaag 215 |||| ||||| |||||| || ||||||||||||||||||| Sbjct: 730 tacagctcgacgatgatctcggccttcttgatccagcaag 691
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence Length = 190469 Score = 48.1 bits (24), Expect = 0.020 Identities = 36/40 (90%) Strand = Plus / Minus Query: 137 ctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||| |||||| ||||||||||| |||||||| ||||||| Sbjct: 43370 ctagcgccgaacggacggcacctccgcgttcaacacacgt 43331 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 cggttgatgtagtcgaacatcttc 63 |||||||||||||||||| ||||| Sbjct: 97224 cggttgatgtagtcgaacttcttc 97247
>gb|AF339051.1| Triticum monococcum WIS-2-1A Ty1-copia-like retrotransposon, complete sequence Length = 9682 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 9344 acccttgtagatcgctaagcggaagcgt 9317 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||||||||||||||| |||||||| Sbjct: 2390 acccttgtagatcgctaagcggaagcgt 2363
>emb|X94973.1|TAH2A274 T.aestivum histone H2A gene (clone TH274) Length = 2546 Score = 46.1 bits (23), Expect = 0.080 Identities = 44/51 (86%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgtatataatgcggttgatgtagtcg 54 ||||| ||||| || |||| |||||||| ||| | |||||||||||||||| Sbjct: 226 accctcgtagaccgttaagcggaagcgtttatcacgcggttgatgtagtcg 176
>gb|L75802.1|WHTHIH2A Triticum aestivum histone H2A gene, complete cds Length = 2546 Score = 46.1 bits (23), Expect = 0.080 Identities = 44/51 (86%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaaggggaagcgtatataatgcggttgatgtagtcg 54 ||||| ||||| || |||| |||||||| ||| | |||||||||||||||| Sbjct: 226 accctcgtagaccgttaagcggaagcgtttatcacgcggttgatgtagtcg 176
>emb|Z84536.1|HV1310KRC H.vulgare BARE-1 long terminal repeat DNA; ID 1310KRCX Length = 168 Score = 46.1 bits (23), Expect = 0.080 Identities = 46/51 (90%), Gaps = 2/51 (3%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaag-gggaagcgtatat-aatgcggttgatgtagt 52 ||||||||||||||||||| ||||||||| || || |||||||||||||| Sbjct: 63 acccttgtagatcgctaagtgggaagcgttaataaacgcggttgatgtagt 13
>ref|XM_475958.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1089 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 257 atggtggagatggtggtggagc 278 |||||||||||||||||||||| Sbjct: 937 atggtggagatggtggtggagc 958
>emb|AJ582552.1|HVU582552 Hordeum vulgare BARE-1 long terminal repeat HvCal-10 mRNA Length = 741 Score = 44.1 bits (22), Expect = 0.31 Identities = 61/74 (82%) Strand = Plus / Minus Query: 176 tacaactcgaggatgatgtccgccttcttgatccagcaagaggggcggagaggcagctga 235 |||| ||||| |||||| || ||||||||||| |||||||| | ||||||| || || Sbjct: 741 tacagctcgacgatgatctcgaccttcttgatctagcaagagagatggagaggtagaaga 682 Query: 236 gttctccgacagca 249 |||||||| ||||| Sbjct: 681 gttctccgtcagca 668
>gb|AY641410.1| Hordeum vulgare subsp. vulgare retrotransposons Sandra3 and Sandra4, complete sequence Length = 7056 Score = 44.1 bits (22), Expect = 0.31 Identities = 44/50 (88%), Gaps = 1/50 (2%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgtacaac 181 |||||||||||||||| ||||||||| |||||||| ||||||| |||| Sbjct: 3882 ccgatctagtgccgaa-caacggcacctccgcgttcaacacacgtgcaac 3930
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 257 atggtggagatggtggtggagc 278 |||||||||||||||||||||| Sbjct: 28831823 atggtggagatggtggtggagc 28831844
>dbj|AK108848.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A04, full insert sequence Length = 1109 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 257 atggtggagatggtggtggagc 278 |||||||||||||||||||||| Sbjct: 823 atggtggagatggtggtggagc 844
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035N21, complete sequence Length = 128331 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 257 atggtggagatggtggtggagc 278 |||||||||||||||||||||| Sbjct: 41645 atggtggagatggtggtggagc 41624
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome condensation factor (CCF), putative resistance protein (RGA-2), putative resistance protein (RGA2) and putative nodulin-like-like protein (NLL) gene, complete cds; and retrotransposons Josephine, Angela-2, Angela-4, Heidi, Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5, Barbara, Isabelle, Erika-2, and Claudia Length = 211009 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 39 gcggttgatgtagtcgaacatcttc 63 |||||||||||||||| |||||||| Sbjct: 147021 gcggttgatgtagtcgtacatcttc 147045 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 cgccttcttgatccagcaaga 216 ||||||||||||||||||||| Sbjct: 83114 cgccttcttgatccagcaaga 83134 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||| ||| ||||| | ||||||||| || ||||||||||||| Sbjct: 39712 ccgatcaagtaccgaacgcacggcacctccgagttcagcacacgt 39756 Score = 42.1 bits (21), Expect = 1.2 Identities = 39/45 (86%) Strand = Plus / Plus Query: 132 ccgatctagtgccgaatggacggcacctacgcgttcagcacacgt 176 |||||| ||| ||||| | ||||||||| || ||||||||||||| Sbjct: 32876 ccgatcaagtaccgaacgcacggcacctccgagttcagcacacgt 32920
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 tgatccagcaagaggggcgga 224 ||||||||||||||||||||| Sbjct: 261043 tgatccagcaagaggggcgga 261063
>emb|BX842572.1| Mycobacterium tuberculosis H37Rv complete genome; segment 1/13 Length = 341957 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 tgatccagcaagaggggcgga 224 ||||||||||||||||||||| Sbjct: 260929 tgatccagcaagaggggcgga 260949
>emb|BX248334.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 1/14 Length = 343050 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 204 tgatccagcaagaggggcgga 224 ||||||||||||||||||||| Sbjct: 261154 tgatccagcaagaggggcgga 261174
>emb|Y18778.2|HMAY18778 Hordeum marinum BARE-1 long terminal repeat DNA (HMARC) Length = 1888 Score = 42.1 bits (21), Expect = 1.2 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Minus Query: 4 acccttgtagatcgctaag-gggaagcgt 31 ||||||||||||||||||| ||||||||| Sbjct: 1789 acccttgtagatcgctaagcgggaagcgt 1761
>dbj|AP003035.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-482L11, complete sequence Length = 170638 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 atggtggagatggtggtggag 277 ||||||||||||||||||||| Sbjct: 103364 atggtggagatggtggtggag 103344
>gb|AD000006.1|MSGY140 Mycobacterium tuberculosis sequence from clone y140 Length = 40806 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 tgatccagcaagaggggcgga 224 ||||||||||||||||||||| Sbjct: 36078 tgatccagcaagaggggcgga 36058
>gb|AF380976.1| Musca domestica microsatellite MdCA121 sequence Length = 287 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 128 tggtggagatggtggtggag 147
>ref|XM_425786.1| PREDICTED: Gallus gallus similar to adenylate kinase (EC 2.7.4.3) 2A, mitochondrial - bovine (LOC428227), mRNA Length = 840 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 349 gagatggtggtggagctgat 368
>gb|BC060518.1| Rattus norvegicus valosin-containing protein, mRNA (cDNA clone MGC:72335 IMAGE:5597843), complete cds Length = 3214 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1981 tggagatggtggtggagctg 2000
>gb|BC049114.1| Mus musculus valosin containing protein, mRNA (cDNA clone MGC:61308 IMAGE:6810751), complete cds Length = 2876 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2047 tggagatggtggtggagctg 2066
>ref|XM_953864.1| Neurospora crassa OR74A hypothetical protein (NCU09718.1) partial mRNA Length = 945 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 142 tggagatggtggtggagctg 123
>ref|XM_330367.1| Neurospora crassa OR74A hypothetical protein (NCU09718.1) partial mRNA Length = 945 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 142 tggagatggtggtggagctg 123
>gb|AC131728.4| Mus musculus BAC clone RP23-122G5 from chromosome 5, complete sequence Length = 211796 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 258 tggtggagatggtggtggagctga 281 |||||||| ||||||||||||||| Sbjct: 112035 tggtggagttggtggtggagctga 112012
>ref|NM_009503.2| Mus musculus valosin containing protein (Vcp), mRNA Length = 3245 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2028 tggagatggtggtggagctg 2047
>ref|XM_985571.1| PREDICTED: Mus musculus similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP), transcript variant 1 (LOC675857), mRNA Length = 3257 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2028 tggagatggtggtggagctg 2047
>emb|Z14044.1|MMVALPRO M.musculus mRNA for valosin-containing protein Length = 3143 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1931 tggagatggtggtggagctg 1950
>gb|DQ127667.1| Emiliania huxleyi virus 163 clone combi126+127.seq partial sequence Length = 861 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 326 tggtggagatggtggtggag 307
>emb|AL691470.17| Mouse DNA sequence from clone RP23-160F12 on chromosome 11 Contains the 3' end of gene FLJ13305, a novel gene, a novel gene (1700061J23Rik) and a CpG island, complete sequence Length = 195614 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 atggtggagatggtggtgga 276 |||||||||||||||||||| Sbjct: 60303 atggtggagatggtggtgga 60322
>gb|BC114241.1| Danio rerio serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1, mRNA (cDNA clone MGC:136659 IMAGE:8008385), complete cds Length = 1397 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 catggtggagatggtggtgg 275 |||||||||||||||||||| Sbjct: 137 catggtggagatggtggtgg 118
>gb|DQ298200.1| Vitis vinifera VvF3'H-2a truncated flavonoid 3'-hydroxylase gene, partial cds Length = 1011 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 98 gagatggtggtggagctgat 117
>gb|DQ298199.1| Vitis vinifera VvF3'H-1d flavonoid 3'-hydroxylase gene, partial cds Length = 1034 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 98 gagatggtggtggagctgat 117
>gb|DQ298198.1| Vitis vinifera VvF3'H-1c flavonoid 3'-hydroxylase gene, partial cds Length = 1034 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 98 gagatggtggtggagctgat 117
>gb|DQ298197.1| Vitis vinifera VvF3'H-1b flavonoid 3'-hydroxylase gene, partial cds Length = 1034 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 98 gagatggtggtggagctgat 117
>gb|DQ298196.1| Vitis vinifera VvF3'H-1a flavonoid 3'-hydroxylase gene, partial cds Length = 1034 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 98 gagatggtggtggagctgat 117
>dbj|AB213605.1| Vitis vinifera VvF3'h4 gene for flavonoid 3'-hydroxylase, complete cds Length = 2421 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 1069 gagatggtggtggagctgat 1088
>dbj|AB213604.1| Vitis vinifera VvF3'h3 gene for flavonoid 3'-hydroxylase, complete cds Length = 2819 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 1477 gagatggtggtggagctgat 1496
>dbj|AB213603.1| Vitis vinifera VvF3'h2 gene for flavonoid 3'-hydroxylase, complete cds Length = 2889 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 1509 gagatggtggtggagctgat 1528
>dbj|AB213602.1| Vitis vinifera VvF3'h1 gene for flavonoid 3'-hydroxylase, complete cds Length = 2547 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 1115 gagatggtggtggagctgat 1134
>dbj|AK132843.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930435I17 product:hypothetical protein, full insert sequence Length = 1018 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 454 tggagatggtggtggagctg 435
>dbj|AK149931.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530106G21 product:valosin containing protein, full insert sequence Length = 2803 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1992 tggagatggtggtggagctg 2011
>dbj|AK146109.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530030L06 product:valosin containing protein, full insert sequence Length = 2855 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1994 tggagatggtggtggagctg 2013
>dbj|AK153012.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830114G12 product:valosin containing protein, full insert sequence Length = 2841 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2030 tggagatggtggtggagctg 2049
>dbj|AK159177.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420007G04 product:valosin containing protein, full insert sequence Length = 2890 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2028 tggagatggtggtggagctg 2047
>dbj|AK151418.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830029K16 product:valosin containing protein, full insert sequence Length = 3210 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1993 tggagatggtggtggagctg 2012
>dbj|AK167794.1| Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library, clone:I730026E20 product:valosin containing protein, full insert sequence Length = 2858 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2047 tggagatggtggtggagctg 2066
>dbj|AK160889.1| Mus musculus 12 days embryo embryonic body below diaphragm region cDNA, RIKEN full-length enriched library, clone:3732413B21 product:valosin containing protein, full insert sequence Length = 2726 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1914 tggagatggtggtggagctg 1933
>dbj|AK153249.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830129H23 product:valosin containing protein, full insert sequence Length = 3286 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2070 tggagatggtggtggagctg 2089
>dbj|AK159475.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420020M12 product:valosin containing protein, full insert sequence Length = 2859 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2026 tggagatggtggtggagctg 2045
>dbj|AK159509.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420022F22 product:valosin containing protein, full insert sequence Length = 2882 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2071 tggagatggtggtggagctg 2090
>dbj|AK169140.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920083B16 product:valosin containing protein, full insert sequence Length = 2812 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2001 tggagatggtggtggagctg 2020
>dbj|AK151109.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830025E07 product:valosin containing protein, full insert sequence Length = 3210 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1993 tggagatggtggtggagctg 2012
>dbj|AK010612.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410030B05 product:transitional endoplasmic reticulum ATPase homolog [Sus scrofa domestica], full insert sequence Length = 1665 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 449 tggagatggtggtggagctg 468
>dbj|AK083821.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length enriched library, clone:D130015G23 product:valosin containing protein, full insert sequence Length = 2416 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1605 tggagatggtggtggagctg 1624
>dbj|AK028264.1| Mus musculus 13 days embryo head cDNA, RIKEN full-length enriched library, clone:3110001E05 product:valosin containing protein, full insert sequence Length = 3245 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2028 tggagatggtggtggagctg 2047
>ref|NG_002295.1| Mus musculus valosin containing protein pseudogene (Vcp-ps) on chromosome X Length = 3607 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2275 tggagatggtggtggagctg 2294
>dbj|AK030751.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730519N02 product:valosin containing protein, full insert sequence Length = 3091 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1930 tggagatggtggtggagctg 1949
>emb|BX936084.2| Gallus gallus finished cDNA, clone ChEST491g11 Length = 1200 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 253 gagatggtggtggagctgat 272
>emb|BX934483.2| Gallus gallus finished cDNA, clone ChEST609d1 Length = 785 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 112 gagatggtggtggagctgat 131
>emb|BX930820.2| Gallus gallus finished cDNA, clone ChEST973i8 Length = 998 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 49 gagatggtggtggagctgat 68
>emb|BX933252.1| Gallus gallus finished cDNA, clone ChEST512l15 Length = 754 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 85 gagatggtggtggagctgat 104
>emb|BX932436.1| Gallus gallus finished cDNA, clone ChEST622p15 Length = 1192 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 1144 tggtggagatggtggtggag 1125
>ref|NM_001013259.1| Danio rerio serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 (serpina1), mRNA Length = 1629 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 catggtggagatggtggtgg 275 |||||||||||||||||||| Sbjct: 143 catggtggagatggtggtgg 124
>dbj|AK209378.1| Mus musculus cDNA, clone:Y2G0114O17, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 410 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 93 tggagatggtggtggagctg 112
>dbj|AK209215.1| Mus musculus cDNA, clone:Y2G0114F19, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 408 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 93 tggagatggtggtggagctg 112
>dbj|AK186028.1| Mus musculus cDNA, clone:Y0G0136A10, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 399 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 93 tggagatggtggtggagctg 112
>gb|AC007263.4|AC007263 Homo sapiens chromosome 14 clone RP11-79J20 containing gene for checkpoint supporessor 1 (CHES1) gene, partial cds, complete sequence Length = 167390 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 88301 tggtggagatggtggtggag 88320 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 88256 tggtggagatggtggtggag 88275 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 88193 tggtggagatggtggtggag 88212
>emb|X81370.1|TAAWJL236 T.aestivumn (subclone pAWJL236) AWJL236 gene Length = 1910 Score = 40.1 bits (20), Expect = 4.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 4 acccttgtagatcgctaaggggaagcgt 31 ||||||| ||||||||||| |||||||| Sbjct: 1761 acccttgaagatcgctaagcggaagcgt 1788
>emb|AL845550.13| Zebrafish DNA sequence from clone CH211-121D13 in linkage group 20, complete sequence Length = 163676 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 catggtggagatggtggtgg 275 |||||||||||||||||||| Sbjct: 78991 catggtggagatggtggtgg 78972
>gb|AF122048.1|AF122048 Mus musculus p97 ATPase pseudogene, complete sequence Length = 3607 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2275 tggagatggtggtggagctg 2294
>emb|AL357093.4|CNS05TDS Human chromosome 14 DNA sequence BAC R-356K23 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 167254 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 7938 tggtggagatggtggtggag 7957 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 7893 tggtggagatggtggtggag 7912 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 7830 tggtggagatggtggtggag 7849
>emb|AL157736.3|CNS01RG3 Human chromosome 14 DNA sequence Partial sequence from BAC R-945C20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 200542 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 97381 tggtggagatggtggtggag 97400 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 97336 tggtggagatggtggtggag 97355 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 97273 tggtggagatggtggtggag 97292
>gb|U11760.1|RNU11760 Rattus norvegicus transitional endoplasmic reticulum ATPase mRNA, complete cds Length = 2870 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2013 tggagatggtggtggagctg 2032
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 197928 tggtggagatggtggtggag 197947 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 189045 tggtggagatggtggtggag 189026 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tggtggagatggtggtggag 277 |||||||||||||||||||| Sbjct: 169583 tggtggagatggtggtggag 169564
>ref|NM_053864.2| Rattus norvegicus valosin-containing protein (Vcp), mRNA Length = 3214 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 1981 tggagatggtggtggagctg 2000
>gb|AC005259.1|AC005259 Mouse BAC CitbCJ7 219m7, genomic sequence, complete sequence Length = 124230 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 85298 tggagatggtggtggagctg 85317
>emb|AJ880357.1| Vitis vinifera mRNA for flavonoid-3'-hydroxylase Length = 1733 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 gagatggtggtggagctgat 282 |||||||||||||||||||| Sbjct: 627 gagatggtggtggagctgat 646
>gb|BC043053.1| Mus musculus valosin containing protein, mRNA (cDNA clone MGC:57954 IMAGE:6418662), complete cds Length = 2898 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 2003 tggagatggtggtggagctg 2022
>emb|AL591782.1|SME591782 Sinorhizobium meliloti 1021 complete chromosome; segment 1/12 Length = 260050 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ggatgatgtccgccttcttg 205 |||||||||||||||||||| Sbjct: 124443 ggatgatgtccgccttcttg 124462
>emb|AL672276.9| Mouse DNA sequence from clone RP23-124L1 on chromosome 4, complete sequence Length = 208030 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 119283 tggagatggtggtggagctg 119264
>emb|AL807824.10| Mouse DNA sequence from clone RP23-37J21 on chromosome 11, complete sequence Length = 178597 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 ggtggagatggtggtggagc 278 |||||||||||||||||||| Sbjct: 76144 ggtggagatggtggtggagc 76125
>emb|AL663052.8| Mouse DNA sequence from clone RP23-202N14 on chromosome X, complete sequence Length = 202972 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tggagatggtggtggagctg 280 |||||||||||||||||||| Sbjct: 123176 tggagatggtggtggagctg 123157 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,779,934 Number of Sequences: 3902068 Number of extensions: 2779934 Number of successful extensions: 71627 Number of sequences better than 10.0: 184 Number of HSP's better than 10.0 without gapping: 181 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 70643 Number of HSP's gapped (non-prelim): 963 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
