>CTPA_SYNY3 (Q55669) Carboxyl-terminal-processing protease precursor (EC|
           3.4.21.102)
          Length = 427

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +3

Query: 39  TPSPSPRTREVNRVQRTLVEAWGLIRETFVDPTFNHQDW 155
           TPS    T E    Q+ L+++W L+ ++++D TFNHQ+W
Sbjct: 26  TPSALAFTEE----QKLLLQSWRLVNQSYLDETFNHQNW 60

>YPEB_SYNP2 (P42784) Hypothetical protein in petB 5'region (Fragment)|
          Length = 411

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 48  PSPRTREVNRVQRTLVEAWGLIRETFVDPTFNHQDW 155
           P  R       Q  L++AW  + + +VD TFNHQ+W
Sbjct: 23  PMERAIAFTDEQDLLLQAWRYVSQAYVDETFNHQNW 58

>RPOB_NEPOL (Q9TL06) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta subunit) (RNA
           polymerase beta subunit)
          Length = 1109

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 116 TDQPPCLHQRPLHPVHLSGPWRRGRRTVSDSARAGGGV 3
           ++Q  C+HQRP+ P+H   P  RG      S+ +GG +
Sbjct: 655 SNQGTCIHQRPIIPLHT--PVIRGDLLADGSSTSGGQI 690

>RECG_SYNY3 (Q55681) ATP-dependent DNA helicase recG (EC 3.6.1.-)|
          Length = 831

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 21  GRVAHRTPSPSPRTREVNRVQRTLVEAWGLIR--ETFVDPTFNHQDWDQKLQ 170
           GRV + T   SP+ + +N +Q  L +  G I+    +    F H+ W +K++
Sbjct: 193 GRVVNCTCFTSPKNQNLNILQIQLRDQTGRIKLSRFYAGKRFAHRGWQEKIK 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,269,513
Number of Sequences: 219361
Number of extensions: 266887
Number of successful extensions: 1030
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)