ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence 278 2e-71
2dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
3dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
4dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
5dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
6dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 266 6e-68
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
8dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
9gb|AC008697.7| Homo sapiens chromosome 5 clone CTB-70D3, complet... 44 0.44
10gb|AC008703.6| Homo sapiens chromosome 5 clone CTB-76P12, comple... 44 0.44
11ref|NM_127296.2| Arabidopsis thaliana transcription factor AT2G1... 42 1.7
12gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds 42 1.7
13gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 42 1.7
14emb|BX842474.1|CNS0A9ZZ Arabidopsis thaliana Full-length cDNA Co... 42 1.7
15gb|BT002633.1| Arabidopsis thaliana At2g17400 gene, complete cds 42 1.7
16gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II sectio... 42 1.7
17dbj|AK176382.1| Arabidopsis thaliana mRNA for hypothetical prote... 42 1.7
18emb|AL627445.21| Mouse DNA sequence from clone RP23-81D2 on chro... 42 1.7
19emb|AL928839.10| Mouse DNA sequence from clone RP23-298M2 on chr... 42 1.7
20gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
21ref|NM_101944.2| Arabidopsis thaliana transcription factor AT1G2... 40 6.8
22ref|XM_633711.1| Dictyostelium discoideum hypothetical protein (... 40 6.8
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.8
24gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete s... 40 6.8
25gb|AF504294.1| Nairobi sheep disease virus isolate IG619 nucleoc... 40 6.8
26gb|AC013476.9| Homo sapiens BAC clone RP11-525G12 from 2, comple... 40 6.8
27gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosom... 40 6.8
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
29emb|BX813771.1|CNS0ADG4 Arabidopsis thaliana Full-length cDNA Co... 40 6.8
30emb|AL627435.19| Mouse DNA sequence from clone RP23-3M14 on chro... 40 6.8
31emb|AL732613.10| Mouse DNA sequence from clone RP23-193A21 on ch... 40 6.8
32gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 genom... 40 6.8 
>gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence
          Length = 1263

 Score =  278 bits (140), Expect = 2e-71
 Identities = 351/416 (84%), Gaps = 9/416 (2%)
 Strand = Plus / Plus

                                                                       
Query: 10  aggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggctg 69
           |||||||||||| |||||||| ||||||||||| ||||||||  ||||||||||| ||| 
Sbjct: 152 aggcactccttg-aatacgag-aaacacaaaatcgaaacagga-gagttccaagtagctt 208

                                                                       
Query: 70  catctactttaactgagcgaattgcttctgatagtcaggtgggtggaagccatgcatcag 129
           ||||| || || | || ||  ||| |||||| |||||||||||||||||||||| ||| |
Sbjct: 209 catctgctctaccagaccggtttggttctgagagtcaggtgggtggaagccatgtatctg 268

                                                                       
Query: 130 gatccggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagc 189
           | || |||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct: 269 gttctggaagagccagaagagaatctgcaactcgtgcaatgcaaggttggcattctcagc 328

                                                                       
Query: 190 gcttgctaggcaacggtgaaattgctgatccagtaattaaggataaagcggctatgcctg 249
           || | ||||| || |||||||| ||||| ||  ||||||||||||||| |  |||   ||
Sbjct: 329 gcctactagggaatggtgaaatcgctgaccctataattaaggataaagggcatat---tg 385

                                                                       
Query: 250 tcttgaagaaggataaaaatccgaaaagcagtggtccggccaagaggaaaaggacaccta 309
           |||| ||||||||||||| ||| |||||||||||| | |||||||||||||||||||   
Sbjct: 386 tcttaaagaaggataaaactcctaaaagcagtggttctgccaagaggaaaaggacactat 445

                                                                       
Query: 310 ccttggaagatgaaaaggcgatgccatacaagtctgagaagctaca---aaatgactcga 366
           || |||||||||| | || ||| || || || |||||  |||||||   |||||||||||
Sbjct: 446 ccctggaagatgacagggtgataccttataaatctgatcagctacacagaaatgactcga 505

                                                                   
Query: 367 cagttattgacatgggccctcctgctgattgggtgaagataaatgttcggagaact 422
             ||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||
Sbjct: 506 tggttattgacatgggcccccctgctgattgggtgaaaataaatgttaggaaaact 561
to top
>dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O14, full
            insert sequence
          Length = 2267

 Score =  266 bits (134), Expect = 6e-68
 Identities = 346/412 (83%), Gaps = 6/412 (1%)
 Strand = Plus / Plus

                                                                        
Query: 10   aggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggctg 69
            |||||||||||| |||| ||| ||||||||||| ||||| || |||||| ||||| ||||
Sbjct: 1232 aggcactccttg-aatatgag-aaacacaaaatcgaaacggg-cgagtttcaagttgctg 1288

                                                                        
Query: 70   catctactttaactgagcgaattgcttctgatagtcaggtgggtggaagccatgcatcag 129
            |||||| |||||| ||| | ||| ||||||| ||||||||   ||| | |||||| || |
Sbjct: 1289 catctaatttaacagagaggattacttctgaaagtcaggt---tggcatccatgcttctg 1345

                                                                        
Query: 130  gatccggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagc 189
            | || |||||||||||||||||||||||||| || || |||||||| ||||| || ||||
Sbjct: 1346 gttctggaagagctagaagagaatctgcaacccgagctatgcaaggctggcactctcagc 1405

                                                                        
Query: 190  gcttgctaggcaacggtgaaattgctgatccagtaattaaggataaagcggctatgcctg 249
            ||||||| ||||| |||||||||||||||||| ||||||| ||||||| | |  || |||
Sbjct: 1406 gcttgcttggcaatggtgaaattgctgatccaataattaaagataaagggacggtgtctg 1465

                                                                        
Query: 250  tcttgaagaaggataaaaatccgaaaagcagtggtccggccaagaggaaaaggacaccta 309
            |||| || |||||||||| ||| |||||||| ||| | |||||||||||||||||||| |
Sbjct: 1466 tcttaaaaaaggataaaactcctaaaagcagcggttctgccaagaggaaaaggacaccga 1525

                                                                        
Query: 310  ccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaatgactcgacag 369
            ||||||||||||| | |    | ||||| ||  |||| ||||||||||||||||| |  |
Sbjct: 1526 ccttggaagatgacaggattgtaccatataaacctgacaagctacaaaatgactcaatgg 1585

                                                                
Query: 370  ttattgacatgggccctcctgctgattgggtgaagataaatgttcggagaac 421
            || ||||| | |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 1586 ttcttgaccttggccctccagctgattgggtaaagataaacgttcggagaac 1637
to top
>dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P10, full
            insert sequence
          Length = 2308

 Score =  266 bits (134), Expect = 6e-68
 Identities = 346/412 (83%), Gaps = 6/412 (1%)
 Strand = Plus / Plus

                                                                        
Query: 10   aggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggctg 69
            |||||||||||| |||| ||| ||||||||||| ||||| || |||||| ||||| ||||
Sbjct: 1175 aggcactccttg-aatatgag-aaacacaaaatcgaaacggg-cgagtttcaagttgctg 1231

                                                                        
Query: 70   catctactttaactgagcgaattgcttctgatagtcaggtgggtggaagccatgcatcag 129
            |||||| |||||| ||| | ||| ||||||| ||||||||   ||| | |||||| || |
Sbjct: 1232 catctaatttaacagagaggattacttctgaaagtcaggt---tggcatccatgcttctg 1288

                                                                        
Query: 130  gatccggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagc 189
            | || |||||||||||||||||||||||||| || || |||||||| ||||| || ||||
Sbjct: 1289 gttctggaagagctagaagagaatctgcaacccgagctatgcaaggctggcactctcagc 1348

                                                                        
Query: 190  gcttgctaggcaacggtgaaattgctgatccagtaattaaggataaagcggctatgcctg 249
            ||||||| ||||| |||||||||||||||||| ||||||| ||||||| | |  || |||
Sbjct: 1349 gcttgcttggcaatggtgaaattgctgatccaataattaaagataaagggacggtgtctg 1408

                                                                        
Query: 250  tcttgaagaaggataaaaatccgaaaagcagtggtccggccaagaggaaaaggacaccta 309
            |||| || |||||||||| ||| |||||||| ||| | |||||||||||||||||||| |
Sbjct: 1409 tcttaaaaaaggataaaactcctaaaagcagcggttctgccaagaggaaaaggacaccga 1468

                                                                        
Query: 310  ccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaatgactcgacag 369
            ||||||||||||| | |    | ||||| ||  |||| ||||||||||||||||| |  |
Sbjct: 1469 ccttggaagatgacaggattgtaccatataaacctgacaagctacaaaatgactcaatgg 1528

                                                                
Query: 370  ttattgacatgggccctcctgctgattgggtgaagataaatgttcggagaac 421
            || ||||| | |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 1529 ttcttgaccttggccctccagctgattgggtaaagataaacgttcggagaac 1580
to top
>dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020C22, full
            insert sequence
          Length = 2286

 Score =  266 bits (134), Expect = 6e-68
 Identities = 346/412 (83%), Gaps = 6/412 (1%)
 Strand = Plus / Plus

                                                                        
Query: 10   aggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggctg 69
            |||||||||||| |||| ||| ||||||||||| ||||| || |||||| ||||| ||||
Sbjct: 1191 aggcactccttg-aatatgag-aaacacaaaatcgaaacggg-cgagtttcaagttgctg 1247

                                                                        
Query: 70   catctactttaactgagcgaattgcttctgatagtcaggtgggtggaagccatgcatcag 129
            |||||| |||||| ||| | ||| ||||||| ||||||||   ||| | |||||| || |
Sbjct: 1248 catctaatttaacagagaggattacttctgaaagtcaggt---tggcatccatgcttctg 1304

                                                                        
Query: 130  gatccggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagc 189
            | || |||||||||||||||||||||||||| || || |||||||| ||||| || ||||
Sbjct: 1305 gttctggaagagctagaagagaatctgcaacccgagctatgcaaggctggcactctcagc 1364

                                                                        
Query: 190  gcttgctaggcaacggtgaaattgctgatccagtaattaaggataaagcggctatgcctg 249
            ||||||| ||||| |||||||||||||||||| ||||||| ||||||| | |  || |||
Sbjct: 1365 gcttgcttggcaatggtgaaattgctgatccaataattaaagataaagggacggtgtctg 1424

                                                                        
Query: 250  tcttgaagaaggataaaaatccgaaaagcagtggtccggccaagaggaaaaggacaccta 309
            |||| || |||||||||| ||| |||||||| ||| | |||||||||||||||||||| |
Sbjct: 1425 tcttaaaaaaggataaaactcctaaaagcagcggttctgccaagaggaaaaggacaccga 1484

                                                                        
Query: 310  ccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaatgactcgacag 369
            ||||||||||||| | |    | ||||| ||  |||| ||||||||||||||||| |  |
Sbjct: 1485 ccttggaagatgacaggattgtaccatataaacctgacaagctacaaaatgactcaatgg 1544

                                                                
Query: 370  ttattgacatgggccctcctgctgattgggtgaagataaatgttcggagaac 421
            || ||||| | |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 1545 ttcttgaccttggccctccagctgattgggtaaagataaacgttcggagaac 1596
to top
>dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P16, full
           insert sequence
          Length = 1255

 Score =  266 bits (134), Expect = 6e-68
 Identities = 346/412 (83%), Gaps = 6/412 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  aggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggctg 69
           |||||||||||| |||| ||| ||||||||||| ||||| || |||||| ||||| ||||
Sbjct: 154 aggcactccttg-aatatgag-aaacacaaaatcgaaacggg-cgagtttcaagttgctg 210

                                                                       
Query: 70  catctactttaactgagcgaattgcttctgatagtcaggtgggtggaagccatgcatcag 129
           |||||| |||||| ||| | ||| ||||||| ||||||||   ||| | |||||| || |
Sbjct: 211 catctaatttaacagagaggattacttctgaaagtcaggt---tggcatccatgcttctg 267

                                                                       
Query: 130 gatccggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagc 189
           | || |||||||||||||||||||||||||| || || |||||||| ||||| || ||||
Sbjct: 268 gttctggaagagctagaagagaatctgcaacccgagctatgcaaggctggcactctcagc 327

                                                                       
Query: 190 gcttgctaggcaacggtgaaattgctgatccagtaattaaggataaagcggctatgcctg 249
           ||||||| ||||| |||||||||||||||||| ||||||| ||||||| | |  || |||
Sbjct: 328 gcttgcttggcaatggtgaaattgctgatccaataattaaagataaagggacggtgtctg 387

                                                                       
Query: 250 tcttgaagaaggataaaaatccgaaaagcagtggtccggccaagaggaaaaggacaccta 309
           |||| || |||||||||| ||| |||||||| ||| | |||||||||||||||||||| |
Sbjct: 388 tcttaaaaaaggataaaactcctaaaagcagcggttctgccaagaggaaaaggacaccga 447

                                                                       
Query: 310 ccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaatgactcgacag 369
           ||||||||||||| | |    | ||||| ||  |||| ||||||||||||||||| |  |
Sbjct: 448 ccttggaagatgacaggattgtaccatataaacctgacaagctacaaaatgactcaatgg 507

                                                               
Query: 370 ttattgacatgggccctcctgctgattgggtgaagataaatgttcggagaac 421
           || ||||| | |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 508 ttcttgaccttggccctccagctgattgggtaaagataaacgttcggagaac 559
to top
>dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B09, full
           insert sequence
          Length = 1331

 Score =  266 bits (134), Expect = 6e-68
 Identities = 346/412 (83%), Gaps = 6/412 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  aggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggctg 69
           |||||||||||| |||| ||| ||||||||||| ||||| || |||||| ||||| ||||
Sbjct: 351 aggcactccttg-aatatgag-aaacacaaaatcgaaacggg-cgagtttcaagttgctg 407

                                                                       
Query: 70  catctactttaactgagcgaattgcttctgatagtcaggtgggtggaagccatgcatcag 129
           |||||| |||||| ||| | ||| ||||||| ||||||||   ||| | |||||| || |
Sbjct: 408 catctaatttaacagagaggattacttctgaaagtcaggt---tggcatccatgcttctg 464

                                                                       
Query: 130 gatccggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagc 189
           | || |||||||||||||||||||||||||| || || |||||||| ||||| || ||||
Sbjct: 465 gttctggaagagctagaagagaatctgcaacccgagctatgcaaggctggcactctcagc 524

                                                                       
Query: 190 gcttgctaggcaacggtgaaattgctgatccagtaattaaggataaagcggctatgcctg 249
           ||||||| ||||| |||||||||||||||||| ||||||| ||||||| | |  || |||
Sbjct: 525 gcttgcttggcaatggtgaaattgctgatccaataattaaagataaagggacggtgtctg 584

                                                                       
Query: 250 tcttgaagaaggataaaaatccgaaaagcagtggtccggccaagaggaaaaggacaccta 309
           |||| || |||||||||| ||| |||||||| ||| | |||||||||||||||||||| |
Sbjct: 585 tcttaaaaaaggataaaactcctaaaagcagcggttctgccaagaggaaaaggacaccga 644

                                                                       
Query: 310 ccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaatgactcgacag 369
           ||||||||||||| | |    | ||||| ||  |||| ||||||||||||||||| |  |
Sbjct: 645 ccttggaagatgacaggattgtaccatataaacctgacaagctacaaaatgactcaatgg 704

                                                               
Query: 370 ttattgacatgggccctcctgctgattgggtgaagataaatgttcggagaac 421
           || ||||| | |||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 705 ttcttgaccttggccctccagctgattgggtaaagataaacgttcggagaac 756
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                            
Query: 135      ggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagcgcttg 194
                |||||||||||||||||||||||||| || || |||||||| ||||| || |||||||||
Sbjct: 24633760 ggaagagctagaagagaatctgcaacccgagctatgcaaggctggcactctcagcgcttg 24633819

                                                   
Query: 195      ctaggcaacggtgaaattgctgatccagtaattaa 229
                || ||||| |||||||||||||||||| |||||||
Sbjct: 24633820 cttggcaatggtgaaattgctgatccaataattaa 24633854



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                            
Query: 356      aaatgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcg 415
                ||||||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| |||||
Sbjct: 24634350 aaatgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcg 24634409

                                     
Query: 416      gagaactgngagtatctcatt 436
                |||||| |  |||||||||||
Sbjct: 24634410 gagaaccgtaagtatctcatt 24634430



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 88/102 (86%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                            
Query: 8        gcaggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggc 67
                |||||||||||||| |||| ||| ||||||||||| ||||| || |||||| ||||| ||
Sbjct: 24633218 gcaggcactccttg-aatatgag-aaacacaaaatcgaaac-gggcgagtttcaagttgc 24633274

                                                          
Query: 68       tgcatctactttaactgagcgaattgcttctgatagtcaggt 109
                |||||||| |||||| ||| | ||| ||||||| ||||||||
Sbjct: 24633275 tgcatctaatttaacagagaggattacttctgaaagtcaggt 24633316



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                   
Query: 288      gccaagaggaaaaggacacctaccttggaagatga 322
                |||||||||||||||||||| ||||||||||||||
Sbjct: 24634056 gccaagaggaaaaggacaccgaccttggaagatga 24634090
to top
>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0040H10
          Length = 173301

 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                          
Query: 135    ggaagagctagaagagaatctgcaactcgtgccatgcaaggatggcattcacagcgcttg 194
              |||||||||||||||||||||||||| || || |||||||| ||||| || |||||||||
Sbjct: 116953 ggaagagctagaagagaatctgcaacccgagctatgcaaggctggcactctcagcgcttg 117012

                                                 
Query: 195    ctaggcaacggtgaaattgctgatccagtaattaa 229
              || ||||| |||||||||||||||||| |||||||
Sbjct: 117013 cttggcaatggtgaaattgctgatccaataattaa 117047



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 69/81 (85%)
 Strand = Plus / Plus

                                                                          
Query: 356    aaatgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcg 415
              ||||||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| |||||
Sbjct: 117543 aaatgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcg 117602

                                   
Query: 416    gagaactgngagtatctcatt 436
              |||||| |  |||||||||||
Sbjct: 117603 gagaaccgtaagtatctcatt 117623



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 88/102 (86%), Gaps = 3/102 (2%)
 Strand = Plus / Plus

                                                                          
Query: 8      gcaggcactccttgtaatacgagcaaacacaaaattgaaacaggtcgagttccaagtggc 67
              |||||||||||||| |||| ||| ||||||||||| ||||| || |||||| ||||| ||
Sbjct: 116411 gcaggcactccttg-aatatgag-aaacacaaaatcgaaac-gggcgagtttcaagttgc 116467

                                                        
Query: 68     tgcatctactttaactgagcgaattgcttctgatagtcaggt 109
              |||||||| |||||| ||| | ||| ||||||| ||||||||
Sbjct: 116468 tgcatctaatttaacagagaggattacttctgaaagtcaggt 116509



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 288    gccaagaggaaaaggacacctaccttggaagatga 322
              |||||||||||||||||||| ||||||||||||||
Sbjct: 117249 gccaagaggaaaaggacaccgaccttggaagatga 117283
to top
>gb|AC008697.7| Homo sapiens chromosome 5 clone CTB-70D3, complete sequence
          Length = 120994

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 339    aagtctgagaagctacaaaatg 360
              ||||||||||||||||||||||
Sbjct: 120642 aagtctgagaagctacaaaatg 120621
to top
>gb|AC008703.6| Homo sapiens chromosome 5 clone CTB-76P12, complete sequence
          Length = 214187

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 339   aagtctgagaagctacaaaatg 360
             ||||||||||||||||||||||
Sbjct: 35955 aagtctgagaagctacaaaatg 35934
to top
>ref|NM_127296.2| Arabidopsis thaliana transcription factor AT2G17410 mRNA, complete
            cds
          Length = 2819

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 162  cgtgccatgcaaggatggcattcacagcg 190
            ||||| |||||||| ||||||||||||||
Sbjct: 2038 cgtgctatgcaaggttggcattcacagcg 2066
to top
>gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds
          Length = 2826

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 162  cgtgccatgcaaggatggcattcacagcg 190
            ||||| |||||||| ||||||||||||||
Sbjct: 2038 cgtgctatgcaaggttggcattcacagcg 2066
to top
>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 394   attgggtgaagataaatgttc 414
             |||||||||||||||||||||
Sbjct: 28267 attgggtgaagataaatgttc 28287
to top
>emb|BX842474.1|CNS0A9ZZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB2ZB09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2705

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 162  cgtgccatgcaaggatggcattcacagcg 190
            ||||| |||||||| ||||||||||||||
Sbjct: 1996 cgtgctatgcaaggttggcattcacagcg 2024
to top
>gb|BT002633.1| Arabidopsis thaliana At2g17400 gene, complete cds
          Length = 2361

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 162  cgtgccatgcaaggatggcattcacagcg 190
            ||||| |||||||| ||||||||||||||
Sbjct: 1858 cgtgctatgcaaggttggcattcacagcg 1886
to top
>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete
             sequence. Sequence from clones T23A1, F5J6, MJB20
          Length = 76170

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 162   cgtgccatgcaaggatggcattcacagcg 190
             ||||| |||||||| ||||||||||||||
Sbjct: 63243 cgtgctatgcaaggttggcattcacagcg 63271
to top
>dbj|AK176382.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
            clone: RAFL24-09-F03
          Length = 2827

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 162  cgtgccatgcaaggatggcattcacagcg 190
            ||||| |||||||| ||||||||||||||
Sbjct: 2038 cgtgctatgcaaggttggcattcacagcg 2066
to top
>emb|AL627445.21| Mouse DNA sequence from clone RP23-81D2 on chromosome 11, complete
             sequence
          Length = 216303

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 294   aggaaaaggacacctaccttg 314
             |||||||||||||||||||||
Sbjct: 42120 aggaaaaggacacctaccttg 42100
to top
>emb|AL928839.10| Mouse DNA sequence from clone RP23-298M2 on chromosome 2, complete
              sequence
          Length = 140119

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     gcaaacacaaaattgaaacag 50
              |||||||||||||||||||||
Sbjct: 127452 gcaaacacaaaattgaaacag 127432
to top
>gb|AC125495.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0085M22, complete sequence
          Length = 145104

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 238   cggctatgcctgtcttgaagaagg 261
             |||||||||||||| |||||||||
Sbjct: 23147 cggctatgcctgtcatgaagaagg 23170
to top
>ref|NM_101944.2| Arabidopsis thaliana transcription factor AT1G20910 mRNA, complete
            cds
          Length = 1638

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  tgctgattgggtgaagataaatgt 412
            |||||| |||||||||||||||||
Sbjct: 1099 tgctgactgggtgaagataaatgt 1122
to top
>ref|XM_633711.1| Dictyostelium discoideum hypothetical protein (DDB0218553), partial
            mRNA
          Length = 2985

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   gctgcatctactttaactga 85
            ||||||||||||||||||||
Sbjct: 2522 gctgcatctactttaactga 2503
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 238     cggctatgcctgtcttgaagaagg 261
               |||||||||||||| |||||||||
Sbjct: 8399604 cggctatgcctgtcatgaagaagg 8399627
to top
>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence
          Length = 124550

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 342    tctgagaagctacaaaatga 361
              ||||||||||||||||||||
Sbjct: 105103 tctgagaagctacaaaatga 105084
to top
>gb|AF504294.1| Nairobi sheep disease virus isolate IG619 nucleocapsid mRNA,
           complete cds
          Length = 1590

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 163 gtgccatgcaaggatggcat 182
           ||||||||||||||||||||
Sbjct: 102 gtgccatgcaaggatggcat 83
to top
>gb|AC013476.9| Homo sapiens BAC clone RP11-525G12 from 2, complete sequence
          Length = 142305

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 113   tggaagccatgcatcaggat 132
             ||||||||||||||||||||
Sbjct: 80040 tggaagccatgcatcaggat 80059
to top
>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence
          Length = 194368

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    atgccatacaagtctgagaa 349
              ||||||||||||||||||||
Sbjct: 110504 atgccatacaagtctgagaa 110485
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 238     cggctatgcctgtcttgaagaagg 261
               |||||||||||||| |||||||||
Sbjct: 8397439 cggctatgcctgtcatgaagaagg 8397462
to top
>emb|BX813771.1|CNS0ADG4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB39ZB10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1545

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  tgctgattgggtgaagataaatgt 412
            |||||| |||||||||||||||||
Sbjct: 1061 tgctgactgggtgaagataaatgt 1084
to top
>emb|AL627435.19| Mouse DNA sequence from clone RP23-3M14 on chromosome X, complete
              sequence
          Length = 199970

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    atgcaaggatggcattcaca 187
              ||||||||||||||||||||
Sbjct: 108249 atgcaaggatggcattcaca 108230
to top
>emb|AL732613.10| Mouse DNA sequence from clone RP23-193A21 on chromosome 4, complete
              sequence
          Length = 204012

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    gctatgcctgtcttgaagaa 259
              ||||||||||||||||||||
Sbjct: 105550 gctatgcctgtcttgaagaa 105531
to top
>gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 genomic sequence, complete
             sequence
          Length = 103192

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 389   tgctgattgggtgaagataaatgt 412
             |||||| |||||||||||||||||
Sbjct: 69945 tgctgactgggtgaagataaatgt 69968


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,944,549
Number of Sequences: 3902068
Number of extensions: 3944549
Number of successful extensions: 70801
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70710
Number of HSP's gapped (non-prelim): 89
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top