No.
Definition
Score (bits)
E Value
1 dbj|AK067232.1| Oryza sativa (japonica cultivar-group) cDNA clon...
432
e-118
2 dbj|AK065216.1| Oryza sativa (japonica cultivar-group) cDNA clon...
420
e-114
3 gb|BT008915.1| Triticum aestivum clone wpa1c.pk004.i4:fis, full ...
309
4e-81
4 gb|AY109410.1| Zea mays CL741_1 mRNA sequence
258
1e-65
5 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
107
3e-20
6 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
107
3e-20
7 emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb...
107
3e-20
8 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
100
8e-18
9 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
100
8e-18
10 emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa...
100
8e-18
11 gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, comple...
42
1.5
12 emb|AL731824.5| Human DNA sequence from clone RP11-382H18 on chr...
40
6.1
13 emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chro...
40
6.1
14 gb|AC137667.18| Medicago truncatula clone mth2-30h5, complete se...
40
6.1
15 gb|AC135160.22| Medicago truncatula clone mth2-20m5, complete se...
40
6.1
16 gb|U55581.1|MMU55581 Mus musculus anti-DNA immunoglobulin light ...
40
6.1
17 gb|AY753327.1| Shrimp white spot syndrome virus isolate TH-96-II...
40
6.1
18 gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2,...
40
6.1
19 emb|AL157971.4|CNS01RGG Human chromosome 14 DNA sequence BAC R-9...
40
6.1
20 emb|AL133453.3|CNS01DV4 Human chromosome 14 DNA sequence BAC R-8...
40
6.1
21 dbj|AP006209.1| Homo sapiens genomic DNA, chromosome 9, clone:RP...
40
6.1
22 emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chro...
40
6.1
23 gb|AC132611.3| Mus musculus BAC clone RP23-375I21 from 17, compl...
40
6.1
24 gb|M84440.1|MUSIGLCC Mouse rearranged light chain variable regio...
40
6.1
25 gb|M84436.1|MUSIGLBM Mouse rearranged light chain variable regio...
40
6.1
26 gb|M84434.1|MUSIGLAC Mouse rearranged light chain variable regio...
40
6.1
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 107 bits (54), Expect = 3e-20
Identities = 84/94 (89%)
Strand = Plus / Minus
Query: 218 cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
|||||||||||||| |||||| ||| || |||||||||||||||||| ||||||||||
Sbjct: 2165044 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 2164985
Query: 278 tgctacacgagtggcactactggcacaccaaagg 311
|| ||||| |||||||||||||||||||| ||||
Sbjct: 2164984 tgttacactagtggcactactggcacaccgaagg 2164951
Score = 87.7 bits (44), Expect = 3e-14
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 391 gtatatctcatatctacctttagctcacatctatgagagagctaacca 438
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2164672 gtatatctcatatctacctttagctcacatctatgagagagttaacca 2164625
Score = 81.8 bits (41), Expect = 2e-12
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 133 ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
|||| |||| |||||||||||||||| ||||||| | || |||| |||||||||||||
Sbjct: 2166394 ggtaattggtggagacaatgcaaatatgccatctaccccaacagctactggagtggaaat 2166335
Query: 193 tataacttactccagtctacacagccagg 221
||||||||||||||| |||| |||||||
Sbjct: 2166334 tataacttactccagactacttagccagg 2166306
Score = 75.8 bits (38), Expect = 1e-10
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 28 agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
|||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 2167027 agttcattgttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagca 2166968
Query: 87 ct 88
||
Sbjct: 2166967 ct 2166966
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 92 ctaagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
|||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct: 2166536 ctaagctttataactcaaatgccgtgtgttcgccttatagtggta 2166492
Score = 50.1 bits (25), Expect = 0.006
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 309 agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagc 361
|||||| |||||||||||||| ||| ||||| || ||||| || |||||||||
Sbjct: 2164859 agggagttgttctttctcatgggaatttaattgcaaatgtagcaggatcaagc 2164807
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 107 bits (54), Expect = 3e-20
Identities = 84/94 (89%)
Strand = Plus / Minus
Query: 218 cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
|||||||||||||| |||||| ||| || |||||||||||||||||| ||||||||||
Sbjct: 2164988 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 2164929
Query: 278 tgctacacgagtggcactactggcacaccaaagg 311
|| ||||| |||||||||||||||||||| ||||
Sbjct: 2164928 tgttacactagtggcactactggcacaccgaagg 2164895
Score = 87.7 bits (44), Expect = 3e-14
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 391 gtatatctcatatctacctttagctcacatctatgagagagctaacca 438
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2164616 gtatatctcatatctacctttagctcacatctatgagagagttaacca 2164569
Score = 81.8 bits (41), Expect = 2e-12
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 133 ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
|||| |||| |||||||||||||||| ||||||| | || |||| |||||||||||||
Sbjct: 2166338 ggtaattggtggagacaatgcaaatatgccatctaccccaacagctactggagtggaaat 2166279
Query: 193 tataacttactccagtctacacagccagg 221
||||||||||||||| |||| |||||||
Sbjct: 2166278 tataacttactccagactacttagccagg 2166250
Score = 75.8 bits (38), Expect = 1e-10
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 28 agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
|||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 2166971 agttcattgttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagca 2166912
Query: 87 ct 88
||
Sbjct: 2166911 ct 2166910
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 92 ctaagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
|||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct: 2166480 ctaagctttataactcaaatgccgtgtgttcgccttatagtggta 2166436
Score = 50.1 bits (25), Expect = 0.006
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 309 agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagc 361
|||||| |||||||||||||| ||| ||||| || ||||| || |||||||||
Sbjct: 2164803 agggagttgttctttctcatgggaatttaattgcaaatgtagcaggatcaagc 2164751
>emb|AL928756.4 |CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 132703
Score = 107 bits (54), Expect = 3e-20
Identities = 84/94 (89%)
Strand = Plus / Minus
Query: 218 cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
|||||||||||||| |||||| ||| || |||||||||||||||||| ||||||||||
Sbjct: 47268 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 47209
Query: 278 tgctacacgagtggcactactggcacaccaaagg 311
|| ||||| |||||||||||||||||||| ||||
Sbjct: 47208 tgttacactagtggcactactggcacaccgaagg 47175
Score = 87.7 bits (44), Expect = 3e-14
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 391 gtatatctcatatctacctttagctcacatctatgagagagctaacca 438
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 46896 gtatatctcatatctacctttagctcacatctatgagagagttaacca 46849
Score = 81.8 bits (41), Expect = 2e-12
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 133 ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
|||| |||| |||||||||||||||| ||||||| | || |||| |||||||||||||
Sbjct: 48618 ggtaattggtggagacaatgcaaatatgccatctaccccaacagctactggagtggaaat 48559
Query: 193 tataacttactccagtctacacagccagg 221
||||||||||||||| |||| |||||||
Sbjct: 48558 tataacttactccagactacttagccagg 48530
Score = 75.8 bits (38), Expect = 1e-10
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 28 agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
|||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 49251 agttcattgttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagca 49192
Query: 87 ct 88
||
Sbjct: 49191 ct 49190
Score = 58.0 bits (29), Expect = 3e-05
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 92 ctaagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
|||||||| ||||||||||||| |||||||| ||||||||||||
Sbjct: 48760 ctaagctttataactcaaatgccgtgtgttcgccttatagtggta 48716
Score = 50.1 bits (25), Expect = 0.006
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 309 agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagc 361
|||||| |||||||||||||| ||| ||||| || ||||| || |||||||||
Sbjct: 47083 agggagttgttctttctcatgggaatttaattgcaaatgtagcaggatcaagc 47031
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 99.6 bits (50), Expect = 8e-18
Identities = 83/94 (88%)
Strand = Plus / Minus
Query: 218 cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
|||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||
Sbjct: 2120455 cagggaaagatgagttctagaccttttcgtcctccaaaacctgaagatgttgccactatt 2120396
Query: 278 tgctacacgagtggcactactggcacaccaaagg 311
|| ||||| |||||||| || |||||||||||||
Sbjct: 2120395 tgttacactagtggcacaaccggcacaccaaagg 2120362
Score = 99.6 bits (50), Expect = 8e-18
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 395 atctcatatctacctttagctcacatctatgagagagctaaccaaattgcactgcttc 452
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 2120074 atctcatatctacctttagctcacatctatgagagagttaaccagattgcactgcttc 2120017
Score = 83.8 bits (42), Expect = 5e-13
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 28 agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
|||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 2121908 agttcattgtcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagca 2121849
Query: 87 ct 88
||
Sbjct: 2121848 ct 2121847
Score = 65.9 bits (33), Expect = 1e-07
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 133 ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
|||| |||| |||||||||||||||| ||||||| | || | || |||||||||||||
Sbjct: 2121282 ggtaattggtggagacaatgcaaatatgccatctaccccaacatctactggagtggaaat 2121223
Query: 193 tataacttactccagtctacacagccagg 221
||||| ||||||||| |||| || |||||
Sbjct: 2121222 tataatttactccagactactcaaccagg 2121194
Score = 63.9 bits (32), Expect = 4e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 93 taagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 2121421 taagctttataactcaaatgccatgtgttcgccttatagtggta 2121378
Score = 58.0 bits (29), Expect = 3e-05
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 309 agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagcttgggcg 368
|||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||| |
Sbjct: 2120268 agggagttgttctttctcataggaacttaatcgcaaatgtagcaggatcaagtgtggtca 2120209
Query: 369 ttaaattttaccc 381
|||| ||||||||
Sbjct: 2120208 ttaagttttaccc 2120196
>gb|DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 99.6 bits (50), Expect = 8e-18
Identities = 83/94 (88%)
Strand = Plus / Minus
Query: 218 cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
|||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||
Sbjct: 2128236 cagggaaagatgagttctagaccttttcgtcctccaaaacctgaagatgttgccactatt 2128177
Query: 278 tgctacacgagtggcactactggcacaccaaagg 311
|| ||||| |||||||| || |||||||||||||
Sbjct: 2128176 tgttacactagtggcacaaccggcacaccaaagg 2128143
Score = 99.6 bits (50), Expect = 8e-18
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 395 atctcatatctacctttagctcacatctatgagagagctaaccaaattgcactgcttc 452
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 2127855 atctcatatctacctttagctcacatctatgagagagttaaccagattgcactgcttc 2127798
Score = 83.8 bits (42), Expect = 5e-13
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 28 agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
|||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 2129689 agttcattgtcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagca 2129630
Query: 87 ct 88
||
Sbjct: 2129629 ct 2129628
Score = 65.9 bits (33), Expect = 1e-07
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 133 ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
|||| |||| |||||||||||||||| ||||||| | || | || |||||||||||||
Sbjct: 2129063 ggtaattggtggagacaatgcaaatatgccatctaccccaacatctactggagtggaaat 2129004
Query: 193 tataacttactccagtctacacagccagg 221
||||| ||||||||| |||| || |||||
Sbjct: 2129003 tataatttactccagactactcaaccagg 2128975
Score = 63.9 bits (32), Expect = 4e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 93 taagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 2129202 taagctttataactcaaatgccatgtgttcgccttatagtggta 2129159
Score = 58.0 bits (29), Expect = 3e-05
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 309 agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagcttgggcg 368
|||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||| |
Sbjct: 2128049 agggagttgttctttctcataggaacttaatcgcaaatgtagcaggatcaagtgtggtca 2127990
Query: 369 ttaaattttaccc 381
|||| ||||||||
Sbjct: 2127989 ttaagttttaccc 2127977
>emb|BX000499.1 |CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
chromosome 11 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 125593
Score = 99.6 bits (50), Expect = 8e-18
Identities = 83/94 (88%)
Strand = Plus / Minus
Query: 218 cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
|||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||
Sbjct: 17149 cagggaaagatgagttctagaccttttcgtcctccaaaacctgaagatgttgccactatt 17090
Query: 278 tgctacacgagtggcactactggcacaccaaagg 311
|| ||||| |||||||| || |||||||||||||
Sbjct: 17089 tgttacactagtggcacaaccggcacaccaaagg 17056
Score = 99.6 bits (50), Expect = 8e-18
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 395 atctcatatctacctttagctcacatctatgagagagctaaccaaattgcactgcttc 452
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 16768 atctcatatctacctttagctcacatctatgagagagttaaccagattgcactgcttc 16711
Score = 83.8 bits (42), Expect = 5e-13
Identities = 58/62 (93%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 28 agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
|||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 18602 agttcattgtcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagca 18543
Query: 87 ct 88
||
Sbjct: 18542 ct 18541
Score = 65.9 bits (33), Expect = 1e-07
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 133 ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
|||| |||| |||||||||||||||| ||||||| | || | || |||||||||||||
Sbjct: 17976 ggtaattggtggagacaatgcaaatatgccatctaccccaacatctactggagtggaaat 17917
Query: 193 tataacttactccagtctacacagccagg 221
||||| ||||||||| |||| || |||||
Sbjct: 17916 tataatttactccagactactcaaccagg 17888
Score = 63.9 bits (32), Expect = 4e-07
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 93 taagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 18115 taagctttataactcaaatgccatgtgttcgccttatagtggta 18072
Score = 58.0 bits (29), Expect = 3e-05
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 309 agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagcttgggcg 368
|||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||| |
Sbjct: 16962 agggagttgttctttctcataggaacttaatcgcaaatgtagcaggatcaagtgtggtca 16903
Query: 369 ttaaattttaccc 381
|||| ||||||||
Sbjct: 16902 ttaagttttaccc 16890
>emb|AL662812.12 | Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the
gene for a novel protein similar to smoothelin Smtn, three
novel genes, the Mybbp1a gene for MYB binding protein
(P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the
5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme
E2G 1 (UBC7 homolog, C. elegans) and four CpG islands,
complete sequence
Length = 258521
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 219 agggaaagatgagctctcaa 238
||||||||||||||||||||
Sbjct: 222015 agggaaagatgagctctcaa 221996
>gb|AY753327.1 | Shrimp white spot syndrome virus isolate TH-96-II nonfunctional ORF14
gene, complete sequence; ORFI, ORFII, ORFIII, ORFIV,
ORFV, and ORF15 genes, complete cds; and ORF16 gene,
partial cds
Length = 7800
Score = 40.1 bits (20), Expect = 6.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 210 tacacagccagggaaagatgagct 233
||||||||||| ||||||||||||
Sbjct: 2469 tacacagccagagaaagatgagct 2446
>gb|M84434.1 |MUSIGLAC Mouse rearranged light chain variable region gene sequence
Length = 360
Score = 40.1 bits (20), Expect = 6.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 255 aacctgaagatgttgccact 274
||||||||||||||||||||
Sbjct: 245 aacctgaagatgttgccact 264
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,541,154
Number of Sequences: 3902068
Number of extensions: 3541154
Number of successful extensions: 58741
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58604
Number of HSP's gapped (non-prelim): 129
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)