ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067232.1| Oryza sativa (japonica cultivar-group) cDNA clon... 432 e-118
2dbj|AK065216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114
3gb|BT008915.1| Triticum aestivum clone wpa1c.pk004.i4:fis, full ... 309 4e-81
4gb|AY109410.1| Zea mays CL741_1 mRNA sequence 258 1e-65
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
7emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 107 3e-20
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 100 8e-18
9gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 100 8e-18
10emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 100 8e-18
11gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, comple... 42 1.5
12emb|AL731824.5| Human DNA sequence from clone RP11-382H18 on chr... 40 6.1
13emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chro... 40 6.1
14gb|AC137667.18| Medicago truncatula clone mth2-30h5, complete se... 40 6.1
15gb|AC135160.22| Medicago truncatula clone mth2-20m5, complete se... 40 6.1
16gb|U55581.1|MMU55581 Mus musculus anti-DNA immunoglobulin light ... 40 6.1
17gb|AY753327.1| Shrimp white spot syndrome virus isolate TH-96-II... 40 6.1
18gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2,... 40 6.1
19emb|AL157971.4|CNS01RGG Human chromosome 14 DNA sequence BAC R-9... 40 6.1
20emb|AL133453.3|CNS01DV4 Human chromosome 14 DNA sequence BAC R-8... 40 6.1
21dbj|AP006209.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 6.1
22emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chro... 40 6.1
23gb|AC132611.3| Mus musculus BAC clone RP23-375I21 from 17, compl... 40 6.1
24gb|M84440.1|MUSIGLCC Mouse rearranged light chain variable regio... 40 6.1
25gb|M84436.1|MUSIGLBM Mouse rearranged light chain variable regio... 40 6.1
26gb|M84434.1|MUSIGLAC Mouse rearranged light chain variable regio... 40 6.1

>dbj|AK067232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095N19, full
            insert sequence
          Length = 2600

 Score =  432 bits (218), Expect = e-118
 Identities = 375/426 (88%), Gaps = 1/426 (0%)
 Strand = Plus / Plus

                                                                        
Query: 28   agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
            |||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 680  agttcattgtcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagca 739

                                                                        
Query: 87   ctctgctaagcttcctaactcaaatgccatgtgttcgtcttatagtggtagttggcggag 146
            ||||| |||||||  |||||||||||||||||||||| |||||||||||| |||| ||||
Sbjct: 740  ctctgttaagctttataactcaaatgccatgtgttcgccttatagtggtaattggtggag 799

                                                                        
Query: 147  acaatgcaaatacgccatctgcaacagtagctgctggagtggaaattataacttactcca 206
            |||||||||||| ||||||| |  ||  | || |||||||||||||||||| ||||||||
Sbjct: 800  acaatgcaaatatgccatctaccccaacatctactggagtggaaattataatttactcca 859

                                                                        
Query: 207  gtctacacagccagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatg 266
            | |||| || |||||| |||||||| |||  | |||  ||||||||||||||||||||||
Sbjct: 860  gactactcaaccaggggaagatgagttctagaccttttcgtcctccaaaacctgaagatg 919

                                                                        
Query: 267  ttgccactatctgctacacgagtggcactactggcacaccaaagggagctgttctttctc 326
            |||||||||| || ||||| |||||||| || |||||||||||||||| |||||||||||
Sbjct: 920  ttgccactatttgttacactagtggcacaaccggcacaccaaagggagttgttctttctc 979

                                                                        
Query: 327  atgagaacttaatcgcgaatgttgctggatcaagcttgggcgttaaattttacccctccg 386
            ||  |||||||||||| ||||| || ||||||||  ||| | |||| |||||||| || |
Sbjct: 980  ataggaacttaatcgcaaatgtagcaggatcaagtgtggtcattaagttttacccatctg 1039

                                                                        
Query: 387  acgtgtatatctcatatctacctttagctcacatctatgagagagctaaccaaattgcac 446
            | ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 1040 atgtgtacatctcatatctacctttagctcacatctatgagagagttaaccagattgcac 1099

                  
Query: 447  tgcttc 452
            ||||||
Sbjct: 1100 tgcttc 1105



to top

>dbj|AK065216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G08, full
            insert sequence
          Length = 2525

 Score =  420 bits (212), Expect = e-114
 Identities = 363/412 (88%), Gaps = 1/412 (0%)
 Strand = Plus / Plus

                                                                        
Query: 28   agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
            |||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 699  agttcattgttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagca 758

                                                                        
Query: 87   ctctgctaagcttcctaactcaaatgccatgtgttcgtcttatagtggtagttggcggag 146
            |||| ||||||||  ||||||||||||| |||||||| |||||||||||| |||| ||||
Sbjct: 759  ctctactaagctttataactcaaatgccgtgtgttcgccttatagtggtaattggtggag 818

                                                                        
Query: 147  acaatgcaaatacgccatctgcaacagtagctgctggagtggaaattataacttactcca 206
            |||||||||||| ||||||| |  ||  |||| |||||||||||||||||||||||||||
Sbjct: 819  acaatgcaaatatgccatctaccccaacagctactggagtggaaattataacttactcca 878

                                                                        
Query: 207  gtctacacagccagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatg 266
            | ||||  |||||||||| |||||| |||||| |||  || |||||||||||||||||| 
Sbjct: 879  gactacttagccagggaaggatgagttctcaatcttttcgccctccaaaacctgaagata 938

                                                                        
Query: 267  ttgccactatctgctacacgagtggcactactggcacaccaaagggagctgttctttctc 326
            |||||||||| || ||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct: 939  ttgccactatttgttacactagtggcactactggcacaccgaagggagttgttctttctc 998

                                                                        
Query: 327  atgagaacttaatcgcgaatgttgctggatcaagcttgggcgttaaattttacccctccg 386
            ||| ||| ||||| || ||||| || ||||||||| | | | |||| |||||||| || |
Sbjct: 999  atgggaatttaattgcaaatgtagcaggatcaagcctagtcattaagttttacccatctg 1058

                                                                
Query: 387  acgtgtatatctcatatctacctttagctcacatctatgagagagctaacca 438
            | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1059 atgtgtatatctcatatctacctttagctcacatctatgagagagttaacca 1110



to top

>gb|BT008915.1| Triticum aestivum clone wpa1c.pk004.i4:fis, full insert mRNA sequence
          Length = 2453

 Score =  309 bits (156), Expect = 4e-81
 Identities = 354/416 (85%), Gaps = 3/416 (0%)
 Strand = Plus / Plus

                                                                        
Query: 28   agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
            ||||||||||||||| |||| ||||||| ||||| |||||||| ||| |||| |||||||
Sbjct: 644  agttcattgtgaaccatgcatcagtagaggctatcttctgtgttcctgaaacactaagca 703

                                                                        
Query: 87   ctctgctaagcttcctaactcaaatgccatgtgttcgtcttatagtggtagttggcggag 146
            || || |||||||  ||||||||||||| ||||| || ||||| ||||||||||| ||| 
Sbjct: 704  ctttgttaagctttataactcaaatgccttgtgtgcgccttatcgtggtagttggtggaa 763

                                                                        
Query: 147  acaatgcaaatacgccatctgcaacagtagctgctggagtggaaattataacttactcca 206
             | | |  |||| ||||||| || | | |||||||||| ||||||| ||||| |||||||
Sbjct: 764  tcgaggagaatatgccatcttcacctgcagctgctggaatggaaatcataacctactcca 823

                                                                        
Query: 207  gtctacacagccagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatg 266
              |||||||| |||||| | |||||  | ||| | |  || |||||||||||||||||||
Sbjct: 824  tgctacacagacagggacatatgagtccccaaccctttcggcctccaaaacctgaagatg 883

                                                                        
Query: 267  ttgccactatctgctacacgagtggcactactggcacaccaaagggagctgttctttctc 326
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  ttgccactatctgctacactagtggcactactggcacaccaaagggagctgttctttctc 943

                                                                        
Query: 327  atgagaacttaatcgcgaatgttgctggatcaag-cttgggcgttaaattttacccctcc 385
            ||| ||| || || || ||||| || ||  || | |||||||||||| ||||||||||| 
Sbjct: 944  atgcgaatttcattgcaaatgtagcagg-ccaggacttgggcgttaagttttacccctcg 1002

                                                                    
Query: 386  gacgtgtatatctcatatctacctttagctcacatctatgagagagctaaccaaat 441
            |||||||| ||||||||||||||||| || |||||||| |||||| ||||||||||
Sbjct: 1003 gacgtgtacatctcatatctacctttggcacacatctacgagagaactaaccaaat 1058



to top

>gb|AY109410.1| Zea mays CL741_1 mRNA sequence
          Length = 2505

 Score =  258 bits (130), Expect = 1e-65
 Identities = 208/234 (88%)
 Strand = Plus / Plus

                                                                        
Query: 219  agggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatct 278
            |||||||||||||  |||||||||  ||||| ||||||||||||||| | ||||||||||
Sbjct: 849  agggaaagatgagtcctcaaacttttcgtccaccaaaacctgaagatatagccactatct 908

                                                                        
Query: 279  gctacacgagtggcactactggcacaccaaagggagctgttctttctcatgagaacttaa 338
            ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 909  gctacaccagtggcactactggcacaccaaagggagctgtactttctcatgagaacttaa 968

                                                                        
Query: 339  tcgcgaatgttgctggatcaagcttgggcgttaaattttacccctccgacgtgtatatct 398
            | || ||||| || || ||||| || ||| |||| ||||||||||| || ||||| ||||
Sbjct: 969  ttgcaaatgtagcagggtcaagtttaggcattaagttttacccctctgatgtgtacatct 1028

                                                                  
Query: 399  catatctacctttagctcacatctatgagagagctaaccaaattgcactgcttc 452
            | ||||||||||| ||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 1029 cgtatctacctttggctcacatctatgagagagctaaccaggttgcattgcttc 1082



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 44  gcaacagtagaagctattttctgtgtgcctcaaaccctaagcactctgctaagcttccta 103
           ||||| ||||||| ||| ||||||||||| ||||| |||||| || |  |||||||  | 
Sbjct: 674 gcaacggtagaagttatattctgtgtgccccaaactctaagcgctattttaagctttatt 733

                                
Query: 104 actcaaatgccatgtgttcgt 124
           ||||||||||| |||||||||
Sbjct: 734 actcaaatgccgtgtgttcgt 754



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                           
Query: 218     cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
               |||||||||||||| |||||| |||  || |||||||||||||||||| |||||||||| 
Sbjct: 2165044 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 2164985

                                                 
Query: 278     tgctacacgagtggcactactggcacaccaaagg 311
               || ||||| |||||||||||||||||||| ||||
Sbjct: 2164984 tgttacactagtggcactactggcacaccgaagg 2164951



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                               
Query: 391     gtatatctcatatctacctttagctcacatctatgagagagctaacca 438
               ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2164672 gtatatctcatatctacctttagctcacatctatgagagagttaacca 2164625



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                           
Query: 133     ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
               |||| |||| |||||||||||||||| ||||||| |  ||  |||| |||||||||||||
Sbjct: 2166394 ggtaattggtggagacaatgcaaatatgccatctaccccaacagctactggagtggaaat 2166335

                                            
Query: 193     tataacttactccagtctacacagccagg 221
               ||||||||||||||| ||||  |||||||
Sbjct: 2166334 tataacttactccagactacttagccagg 2166306



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 57/62 (91%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                           
Query: 28      agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
               |||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 2167027 agttcattgttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagca 2166968

                 
Query: 87      ct 88
               ||
Sbjct: 2166967 ct 2166966



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 92      ctaagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
               ||||||||  ||||||||||||| |||||||| ||||||||||||
Sbjct: 2166536 ctaagctttataactcaaatgccgtgtgttcgccttatagtggta 2166492



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 309     agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagc 361
               |||||| |||||||||||||| ||| ||||| || ||||| || |||||||||
Sbjct: 2164859 agggagttgttctttctcatgggaatttaattgcaaatgtagcaggatcaagc 2164807



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                           
Query: 218     cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
               |||||||||||||| |||||| |||  || |||||||||||||||||| |||||||||| 
Sbjct: 2164988 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 2164929

                                                 
Query: 278     tgctacacgagtggcactactggcacaccaaagg 311
               || ||||| |||||||||||||||||||| ||||
Sbjct: 2164928 tgttacactagtggcactactggcacaccgaagg 2164895



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                               
Query: 391     gtatatctcatatctacctttagctcacatctatgagagagctaacca 438
               ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2164616 gtatatctcatatctacctttagctcacatctatgagagagttaacca 2164569



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                           
Query: 133     ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
               |||| |||| |||||||||||||||| ||||||| |  ||  |||| |||||||||||||
Sbjct: 2166338 ggtaattggtggagacaatgcaaatatgccatctaccccaacagctactggagtggaaat 2166279

                                            
Query: 193     tataacttactccagtctacacagccagg 221
               ||||||||||||||| ||||  |||||||
Sbjct: 2166278 tataacttactccagactacttagccagg 2166250



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 57/62 (91%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                           
Query: 28      agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
               |||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 2166971 agttcattgttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagca 2166912

                 
Query: 87      ct 88
               ||
Sbjct: 2166911 ct 2166910



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 92      ctaagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
               ||||||||  ||||||||||||| |||||||| ||||||||||||
Sbjct: 2166480 ctaagctttataactcaaatgccgtgtgttcgccttatagtggta 2166436



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 309     agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagc 361
               |||||| |||||||||||||| ||| ||||| || ||||| || |||||||||
Sbjct: 2164803 agggagttgttctttctcatgggaatttaattgcaaatgtagcaggatcaagc 2164751



to top

>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score =  107 bits (54), Expect = 3e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                         
Query: 218   cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
             |||||||||||||| |||||| |||  || |||||||||||||||||| |||||||||| 
Sbjct: 47268 cagggaaagatgagttctcaatcttttcgccctccaaaacctgaagatattgccactatt 47209

                                               
Query: 278   tgctacacgagtggcactactggcacaccaaagg 311
             || ||||| |||||||||||||||||||| ||||
Sbjct: 47208 tgttacactagtggcactactggcacaccgaagg 47175



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                             
Query: 391   gtatatctcatatctacctttagctcacatctatgagagagctaacca 438
             ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 46896 gtatatctcatatctacctttagctcacatctatgagagagttaacca 46849



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                         
Query: 133   ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
             |||| |||| |||||||||||||||| ||||||| |  ||  |||| |||||||||||||
Sbjct: 48618 ggtaattggtggagacaatgcaaatatgccatctaccccaacagctactggagtggaaat 48559

                                          
Query: 193   tataacttactccagtctacacagccagg 221
             ||||||||||||||| ||||  |||||||
Sbjct: 48558 tataacttactccagactacttagccagg 48530



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 57/62 (91%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                         
Query: 28    agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
             |||||||||| |||| ||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct: 49251 agttcattgttaaccatgcgacagtacaagctattttctgtgtgcctcaaacactaagca 49192

               
Query: 87    ct 88
             ||
Sbjct: 49191 ct 49190



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 92    ctaagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
             ||||||||  ||||||||||||| |||||||| ||||||||||||
Sbjct: 48760 ctaagctttataactcaaatgccgtgtgttcgccttatagtggta 48716



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 309   agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagc 361
             |||||| |||||||||||||| ||| ||||| || ||||| || |||||||||
Sbjct: 47083 agggagttgttctttctcatgggaatttaattgcaaatgtagcaggatcaagc 47031



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                           
Query: 218     cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
               |||||||||||||| |||  | |||  |||||||||||||||||||||||||||||||| 
Sbjct: 2120455 cagggaaagatgagttctagaccttttcgtcctccaaaacctgaagatgttgccactatt 2120396

                                                 
Query: 278     tgctacacgagtggcactactggcacaccaaagg 311
               || ||||| |||||||| || |||||||||||||
Sbjct: 2120395 tgttacactagtggcacaaccggcacaccaaagg 2120362



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                         
Query: 395     atctcatatctacctttagctcacatctatgagagagctaaccaaattgcactgcttc 452
               ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 2120074 atctcatatctacctttagctcacatctatgagagagttaaccagattgcactgcttc 2120017



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 58/62 (93%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                           
Query: 28      agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
               |||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 2121908 agttcattgtcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagca 2121849

                 
Query: 87      ct 88
               ||
Sbjct: 2121848 ct 2121847



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                           
Query: 133     ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
               |||| |||| |||||||||||||||| ||||||| |  ||  | || |||||||||||||
Sbjct: 2121282 ggtaattggtggagacaatgcaaatatgccatctaccccaacatctactggagtggaaat 2121223

                                            
Query: 193     tataacttactccagtctacacagccagg 221
               ||||| ||||||||| |||| || |||||
Sbjct: 2121222 tataatttactccagactactcaaccagg 2121194



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 93      taagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
               |||||||  |||||||||||||||||||||| ||||||||||||
Sbjct: 2121421 taagctttataactcaaatgccatgtgttcgccttatagtggta 2121378



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                           
Query: 309     agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagcttgggcg 368
               |||||| |||||||||||||  |||||||||||| ||||| || ||||||||  ||| | 
Sbjct: 2120268 agggagttgttctttctcataggaacttaatcgcaaatgtagcaggatcaagtgtggtca 2120209

                            
Query: 369     ttaaattttaccc 381
               |||| ||||||||
Sbjct: 2120208 ttaagttttaccc 2120196



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                           
Query: 218     cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
               |||||||||||||| |||  | |||  |||||||||||||||||||||||||||||||| 
Sbjct: 2128236 cagggaaagatgagttctagaccttttcgtcctccaaaacctgaagatgttgccactatt 2128177

                                                 
Query: 278     tgctacacgagtggcactactggcacaccaaagg 311
               || ||||| |||||||| || |||||||||||||
Sbjct: 2128176 tgttacactagtggcacaaccggcacaccaaagg 2128143



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                         
Query: 395     atctcatatctacctttagctcacatctatgagagagctaaccaaattgcactgcttc 452
               ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 2127855 atctcatatctacctttagctcacatctatgagagagttaaccagattgcactgcttc 2127798



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 58/62 (93%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                           
Query: 28      agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
               |||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 2129689 agttcattgtcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagca 2129630

                 
Query: 87      ct 88
               ||
Sbjct: 2129629 ct 2129628



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                           
Query: 133     ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
               |||| |||| |||||||||||||||| ||||||| |  ||  | || |||||||||||||
Sbjct: 2129063 ggtaattggtggagacaatgcaaatatgccatctaccccaacatctactggagtggaaat 2129004

                                            
Query: 193     tataacttactccagtctacacagccagg 221
               ||||| ||||||||| |||| || |||||
Sbjct: 2129003 tataatttactccagactactcaaccagg 2128975



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                           
Query: 93      taagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
               |||||||  |||||||||||||||||||||| ||||||||||||
Sbjct: 2129202 taagctttataactcaaatgccatgtgttcgccttatagtggta 2129159



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                           
Query: 309     agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagcttgggcg 368
               |||||| |||||||||||||  |||||||||||| ||||| || ||||||||  ||| | 
Sbjct: 2128049 agggagttgttctttctcataggaacttaatcgcaaatgtagcaggatcaagtgtggtca 2127990

                            
Query: 369     ttaaattttaccc 381
               |||| ||||||||
Sbjct: 2127989 ttaagttttaccc 2127977



to top

>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                         
Query: 218   cagggaaagatgagctctcaaacttaccgtcctccaaaacctgaagatgttgccactatc 277
             |||||||||||||| |||  | |||  |||||||||||||||||||||||||||||||| 
Sbjct: 17149 cagggaaagatgagttctagaccttttcgtcctccaaaacctgaagatgttgccactatt 17090

                                               
Query: 278   tgctacacgagtggcactactggcacaccaaagg 311
             || ||||| |||||||| || |||||||||||||
Sbjct: 17089 tgttacactagtggcacaaccggcacaccaaagg 17056



 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                       
Query: 395   atctcatatctacctttagctcacatctatgagagagctaaccaaattgcactgcttc 452
             ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 16768 atctcatatctacctttagctcacatctatgagagagttaaccagattgcactgcttc 16711



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 58/62 (93%), Gaps = 1/62 (1%)
 Strand = Plus / Minus

                                                                         
Query: 28    agttcattgtgaacc-tgcaacagtagaagctattttctgtgtgcctcaaaccctaagca 86
             |||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 18602 agttcattgtcaaccatgcgacagtagaagctattttctgtgtgcctcaaacactaagca 18543

               
Query: 87    ct 88
             ||
Sbjct: 18542 ct 18541



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                         
Query: 133   ggtagttggcggagacaatgcaaatacgccatctgcaacagtagctgctggagtggaaat 192
             |||| |||| |||||||||||||||| ||||||| |  ||  | || |||||||||||||
Sbjct: 17976 ggtaattggtggagacaatgcaaatatgccatctaccccaacatctactggagtggaaat 17917

                                          
Query: 193   tataacttactccagtctacacagccagg 221
             ||||| ||||||||| |||| || |||||
Sbjct: 17916 tataatttactccagactactcaaccagg 17888



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 93    taagcttcctaactcaaatgccatgtgttcgtcttatagtggta 136
             |||||||  |||||||||||||||||||||| ||||||||||||
Sbjct: 18115 taagctttataactcaaatgccatgtgttcgccttatagtggta 18072



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 62/73 (84%)
 Strand = Plus / Minus

                                                                         
Query: 309   agggagctgttctttctcatgagaacttaatcgcgaatgttgctggatcaagcttgggcg 368
             |||||| |||||||||||||  |||||||||||| ||||| || ||||||||  ||| | 
Sbjct: 16962 agggagttgttctttctcataggaacttaatcgcaaatgtagcaggatcaagtgtggtca 16903

                          
Query: 369   ttaaattttaccc 381
             |||| ||||||||
Sbjct: 16902 ttaagttttaccc 16890



to top

>gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, complete sequence
          Length = 115597

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Minus

                                               
Query: 420    tctatgagagagctaaccaaattgcactgcttc 452
              ||||||||||||||||| ||||| |||||||||
Sbjct: 111568 tctatgagagagctaacaaaatt-cactgcttc 111537



to top

>emb|AL731824.5| Human DNA sequence from clone RP11-382H18 on chromosome 9, complete
             sequence
          Length = 43906

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    accctaagcactctgctaag 96
             ||||||||||||||||||||
Sbjct: 40602 accctaagcactctgctaag 40621



to top

>emb|AL662812.12| Mouse DNA sequence from clone RP23-48A2 on chromosome 11 Contains the
              gene for a novel protein similar to smoothelin Smtn, three
              novel genes, the Mybbp1a gene for MYB binding protein
              (P160) 1a, a ribosomal protein 7a (Rpl7a) pseudogene, the
              5' end of the Ube2g1 gene for ubiquitin-conjugating enzyme
              E2G 1 (UBC7 homolog, C. elegans) and four CpG islands,
              complete sequence
          Length = 258521

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    agggaaagatgagctctcaa 238
              ||||||||||||||||||||
Sbjct: 222015 agggaaagatgagctctcaa 221996



to top

>gb|AC137667.18| Medicago truncatula clone mth2-30h5, complete sequence
          Length = 111249

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   acgtgtatatctcatatcta 406
             ||||||||||||||||||||
Sbjct: 91898 acgtgtatatctcatatcta 91879



to top

>gb|AC135160.22| Medicago truncatula clone mth2-20m5, complete sequence
          Length = 120202

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   acgtgtatatctcatatcta 406
             ||||||||||||||||||||
Sbjct: 32113 acgtgtatatctcatatcta 32132



to top

>gb|U55581.1|MMU55581 Mus musculus anti-DNA immunoglobulin light chain IgM mRNA, antibody
           363s.57, partial cds
          Length = 343

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 aacctgaagatgttgccact 274
           ||||||||||||||||||||
Sbjct: 246 aacctgaagatgttgccact 265



to top

>gb|AY753327.1| Shrimp white spot syndrome virus isolate TH-96-II nonfunctional ORF14
            gene, complete sequence; ORFI, ORFII, ORFIII, ORFIV,
            ORFV, and ORF15 genes, complete cds; and ORF16 gene,
            partial cds
          Length = 7800

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 210  tacacagccagggaaagatgagct 233
            ||||||||||| ||||||||||||
Sbjct: 2469 tacacagccagagaaagatgagct 2446



to top

>gb|AC007395.3|AC007395 Homo sapiens BAC clone RP11-504O1 from 2, complete sequence
          Length = 158458

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    tgtatatctcatatctacct 409
              ||||||||||||||||||||
Sbjct: 156434 tgtatatctcatatctacct 156453



to top

>emb|AL157971.4|CNS01RGG Human chromosome 14 DNA sequence BAC R-933I1 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176368

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   agccagggaaagatgagctc 234
             ||||||||||||||||||||
Sbjct: 25208 agccagggaaagatgagctc 25189



to top

>emb|AL133453.3|CNS01DV4 Human chromosome 14 DNA sequence BAC R-841O20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 212103

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   agccagggaaagatgagctc 234
             ||||||||||||||||||||
Sbjct: 24865 agccagggaaagatgagctc 24884



to top

>dbj|AP006209.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-235D9, complete
             sequence
          Length = 110261

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    accctaagcactctgctaag 96
             ||||||||||||||||||||
Sbjct: 77998 accctaagcactctgctaag 78017



to top

>emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chromosome 13, complete
            sequence
          Length = 206864

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 305  ccaaagggagctgttctttc 324
            ||||||||||||||||||||
Sbjct: 7303 ccaaagggagctgttctttc 7322



to top

>gb|AC132611.3| Mus musculus BAC clone RP23-375I21 from 17, complete sequence
          Length = 96871

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   gtctacacagccagggaaag 226
             ||||||||||||||||||||
Sbjct: 89655 gtctacacagccagggaaag 89636



to top

>gb|M84440.1|MUSIGLCC Mouse rearranged light chain variable region gene sequence
          Length = 360

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 aacctgaagatgttgccact 274
           ||||||||||||||||||||
Sbjct: 245 aacctgaagatgttgccact 264



to top

>gb|M84436.1|MUSIGLBM Mouse rearranged light chain variable region gene sequence
          Length = 360

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 aacctgaagatgttgccact 274
           ||||||||||||||||||||
Sbjct: 245 aacctgaagatgttgccact 264



to top

>gb|M84434.1|MUSIGLAC Mouse rearranged light chain variable region gene sequence
          Length = 360

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 aacctgaagatgttgccact 274
           ||||||||||||||||||||
Sbjct: 245 aacctgaagatgttgccact 264


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,541,154
Number of Sequences: 3902068
Number of extensions: 3541154
Number of successful extensions: 58741
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58604
Number of HSP's gapped (non-prelim): 129
length of query: 452
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 430
effective length of database: 17,147,199,772
effective search space: 7373295901960
effective search space used: 7373295901960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top