Clone Information

BLAST Search Result

Clone Name	baal40b23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY105969.1\| Zea mays PCO131995 mRNA sequence	646	0.0
2	ref\|XM_467920.1\| Oryza sativa (japonica cultivar-group), mRNA	270	5e-69
3	dbj\|AK060417.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	270	5e-69
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	252	1e-63
5	dbj\|AP005002.3\| Oryza sativa (japonica cultivar-group) genomic D...	252	1e-63
6	ref\|NM_112804.3\| Arabidopsis thaliana ATPREP1/ATZNMP; metalloend...	101	3e-18
7	gb\|AY091051.1\| Arabidopsis thaliana putative metalloprotease (At...	101	3e-18
8	gb\|AY090240.1\| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, comp...	101	3e-18
9	gb\|BT006362.1\| Arabidopsis thaliana At3g19170/MVI11_8 gene, comp...	101	3e-18
10	gb\|BT002372.1\| Arabidopsis thaliana clone U19043 putative metall...	101	3e-18
11	dbj\|AP000419.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	82	3e-12
12	ref\|NM_180631.1\| Arabidopsis thaliana ATPREP2; metalloendopeptid...	74	6e-10
13	ref\|NM_180630.1\| Arabidopsis thaliana ATPREP2; metalloendopeptid...	74	6e-10
14	ref\|NM_103851.3\| Arabidopsis thaliana ATPREP2; metalloendopeptid...	74	6e-10
15	gb\|AY074305.1\| Arabidopsis thaliana putative hydrogenase protein...	74	6e-10
16	gb\|BT004376.1\| Arabidopsis thaliana clone U19879 putative hydrog...	74	6e-10
17	gb\|AC011807.4\|AC011807 Arabidopsis thaliana chromosome I BAC F14...	74	6e-10
18	gb\|AF326573.1\| Dengue virus type 4 strain 814669, complete genome	44	0.56
19	gb\|AY243469.1\| Chimeric Dengue virus vector p4(Delta30)-D2-CME, ...	44	0.56
20	gb\|AY243468.1\| Chimeric Dengue virus vector p4-D2-CME, complete ...	44	0.56
21	gb\|AY243467.1\| Chimeric Dengue virus vector p4(Delta30)-D2-ME, c...	44	0.56
22	gb\|AY243466.1\| Chimeric Dengue virus vector p4-D2-ME, complete s...	44	0.56
23	gb\|AY376438.1\| Dengue virus vector p4(Delta30), complete sequence	44	0.56
24	gb\|AF375822.1\|AF375822 Dengue virus type 4 recombinant clone 2A,...	44	0.56
25	gb\|AF326827.1\| Dengue virus type 4 recombinant clone rDEN4del30,...	44	0.56
26	gb\|AF326826.1\| Dengue virus type 4 recombinant clone 2Adel30, co...	44	0.56
27	gb\|AF326825.1\| Dengue virus type 4 recombinant clone rDEN4, comp...	44	0.56
28	gb\|AF289029.1\|AF289029 dengue virus type 4 China Guangzhou B5 st...	44	0.56
29	gb\|AY947539.1\| Dengue virus type 4 strain H241, complete genome	44	0.56
30	gb\|M14931.2\|DENSTRA Dengue virus type 4 polyprotein precursor, g...	44	0.56
31	gb\|AY776330.1\| Dengue virus type 4 strain Taiwan-2K0713 polyprot...	44	0.56
32	gb\|AY618993.1\| Dengue virus type 4 strain ThD4_0734_00, complete...	44	0.56
33	gb\|AY618992.1\| Dengue virus type 4 strain ThD4_0485_01, complete...	44	0.56
34	gb\|AY618991.1\| Dengue virus type 4 strain ThD4_0087_77, complete...	44	0.56
35	gb\|AY618990.1\| Dengue virus type 4 strain ThD4_0348_91, complete...	44	0.56
36	gb\|AY858050.1\| Dengue virus type 4 strain SW38i polyprotein gene...	44	0.56
37	gb\|AY858049.1\| Dengue virus type 4 strain SW36i polyprotein gene...	44	0.56
38	gb\|AY656168.1\| Chimeric dengue virus vector p4(delta30)-D3L-ME, ...	44	0.56
39	gb\|AY656167.1\| Chimeric dengue virus vector p4-D3L-ME, complete ...	44	0.56
40	gb\|AY648301.1\| Dengue virus type 4 vector p4, complete sequence	44	0.56
41	emb\|Z99287.1\|CEY7A9D Caenorhabditis elegans YAC Y7A9D, complete ...	42	2.2
42	emb\|Z81495.1\|CEF08G2 Caenorhabditis elegans Cosmid F08G2, comple...	42	2.2
43	gb\|AC102103.10\| Mus musculus chromosome 15, clone RP23-82K1, com...	40	8.7
44	gb\|BC036982.1\| Mus musculus thyrotroph embryonic factor, transcr...	40	8.7
45	gb\|BC017689.1\| Mus musculus thyrotroph embryonic factor, transcr...	40	8.7
46	ref\|NM_153484.1\| Mus musculus thyrotroph embryonic factor (Tef),...	40	8.7
47	ref\|NM_017376.2\| Mus musculus thyrotroph embryonic factor (Tef),...	40	8.7
48	gb\|AY540631.1\| Mus musculus thyrotroph embryonic factor alpha is...	40	8.7
49	gb\|AC005486.2\| Homo sapiens PAC clone RP5-1070G24 from 7, comple...	40	8.7
50	gb\|AC132339.3\| Mus musculus BAC clone RP24-165O21 from chromosom...	40	8.7
51	gb\|AC122232.3\| Mus musculus BAC clone RP23-136G1 from chromosome...	40	8.7
52	gb\|AC004413.2\| Homo sapiens PAC clone RP4-650P9 from 7, complete...	40	8.7
53	emb\|BX119976.8\| Zebrafish DNA sequence from clone CH211-196F5 in...	40	8.7
54	gb\|AC092984.3\| Homo sapiens 3 BAC RP11-113N11 (Roswell Park Canc...	40	8.7
55	gb\|AC024606.11\| Homo sapiens chromosome 10 clone RP11-360I20, co...	40	8.7
56	dbj\|AK141606.1\| Mus musculus adult male hippocampus cDNA, RIKEN ...	40	8.7
57	dbj\|AK147965.1\| Mus musculus melanocyte cDNA, RIKEN full-length ...	40	8.7
58	dbj\|AK154472.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	8.7
59	gb\|AC158970.3\| Mus musculus chromosome 15, clone RP24-186A9, com...	40	8.7
60	emb\|BX649307.12\| Zebrafish DNA sequence from clone CH211-209P16 ...	40	8.7
61	dbj\|AK009518.1\| Mus musculus adult male tongue cDNA, RIKEN full-...	40	8.7
62	gb\|BC023410.1\| Mus musculus thyrotroph embryonic factor, mRNA (c...	40	8.7
63	dbj\|AK010205.1\| Mus musculus adult male tongue cDNA, RIKEN full-...	40	8.7
64	dbj\|AK042146.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	40	8.7
65	dbj\|AK085437.1\| Mus musculus 0 day neonate kidney cDNA, RIKEN fu...	40	8.7
66	gb\|BC094169.1\| Xenopus laevis cDNA clone MGC:115330 IMAGE:694890...	40	8.7
67	gb\|AC129207.4\| Mus musculus chromosome 5 clone RP24-280N5, compl...	40	8.7
68	gb\|AF040654.3\| Caenorhabditis elegans cosmid R06B10, complete se...	40	8.7

>gb|AY105969.1| Zea mays PCO131995 mRNA sequence
          Length = 1779

 Score =  646 bits (326), Expect = 0.0
 Identities = 515/578 (89%)
 Strand = Plus / Plus

                                                                        
Query: 57   aaaaatcttgaaaaatctggtcagcatattgccaaatttcttgatgcactcccaagtgcc 116
            |||||||||||||||||  | || ||||||||||||||||||||| |||||||||||  |
Sbjct: 1047 aaaaatcttgaaaaatcaaggcaacatattgccaaatttcttgattcactcccaagtagc 1106

                                                                        
Query: 117  ccatccctgggaagtgatccatggctctctcgattgccttctgttaatgaagccattgtt 176
            |||||| | ||||||||||||||||| |||||  | |||||||| |||||||||||||||
Sbjct: 1107 ccatccattggaagtgatccatggctttctcgtctaccttctgtgaatgaagccattgtt 1166

                                                                        
Query: 177  atccctacacaggttaattatgttggaaaagctggaaacctataccaaagtggataccag 236
             |||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1167 gtcccaactcaggttaattatgttggaaaagctggaaacctttaccaaagtggataccag 1226

                                                                        
Query: 237  ctcaatggaagtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgc 296
            ||||||||||| ||||||||||| || |||||||||||||| |||||||||||||| || 
Sbjct: 1227 ctcaatggaagcgcctatgtcatctcaaagcacataagcaatacatggttatgggatcgt 1286

                                                                        
Query: 297  gttcgagttagtggtggagcatatggagggttttgtgattttgacactcattcaggtgtc 356
            ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || 
Sbjct: 1287 gttcgagttagcggtggtgcatatggaggattttgtgattttgacacccattcaggagtg 1346

                                                                        
Query: 357  ttttcctatttgtcataccgtgatccgaacttgctgaaaacactagaggtctatgatggg 416
            || || ||||| ||||| |||||||| ||||| ||||||||||||||||||||||||| |
Sbjct: 1347 ttctcatatttatcatatcgtgatccaaacttactgaaaacactagaggtctatgatgag 1406

                                                                        
Query: 417  actgcaaagttcctcagagaactagaggtagatgatgatgctctcacaaaagctattatt 476
            || ||||  ||||||||||| |||||  | ||||||||||| ||||||||||||||||||
Sbjct: 1407 acagcaagattcctcagagagctagaattggatgatgatgcactcacaaaagctattatt 1466

                                                                        
Query: 477  ggcaccataggggatgttgattcctatcagctaccagatgctaaaggttacagcagtctg 536
            || |||||||| ||||||||  |||| ||||||||||||||||||||||||||||| || 
Sbjct: 1467 ggaaccataggcgatgttgacgcctaccagctaccagatgctaaaggttacagcagccta 1526

                                                                        
Query: 537  atgcggtatttgttgggcatcactgaggaggaacgccagcaaaggcgtgaagagatactc 596
            ||| | |||||| |||||||||| || ||||||||||||||||| |||||||||||||| 
Sbjct: 1527 atgagatatttgctgggcatcacggatgaggaacgccagcaaagacgtgaagagatacta 1586

                                                  
Query: 597  gcaaccagcgtgaaggatttcaaggagtttgctgatgc 634
            ||||| |||  |||||||||||||||||| ||||||||
Sbjct: 1587 gcaacaagcccgaaggatttcaaggagttcgctgatgc 1624

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>ref|XM_467920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score =  270 bits (136), Expect = 5e-69
 Identities = 217/244 (88%)
 Strand = Plus / Plus

                                                                       
Query: 391 tgaaaacactagaggtctatgatgggactgcaaagttcctcagagaactagaggtagatg 450
           ||||||||||||| || ||||||| ||| || |||||||| ||||| |||||  | ||||
Sbjct: 17  tgaaaacactagaagtttatgatgagacggccaagttcctaagagagctagaaatggatg 76

                                                                       
Query: 451 atgatgctctcacaaaagctattattggcaccataggggatgttgattcctatcagctac 510
           |||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct: 77  atgattgtctcacaaaagctattattggtaccataggtgacgttgattcctaccagctgc 136

                                                                       
Query: 511 cagatgctaaaggttacagcagtctgatgcggtatttgttgggcatcactgaggaggaac 570
           ||||||||||||||||||||||||| ||||| || ||| |||||||||| | ||||||||
Sbjct: 137 cagatgctaaaggttacagcagtctaatgcgatacttgctgggcatcacggtggaggaac 196

                                                                       
Query: 571 gccagcaaaggcgtgaagagatactcgcaaccagcgtgaaggatttcaaggagtttgctg 630
           |||||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||
Sbjct: 197 gccagcaaagacgtgaagagatactatcaaccagcttgaaggatttcaaggagtttgctg 256

               
Query: 631 atgc 634
           ||||
Sbjct: 257 atgc 260

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>dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F01, full
           insert sequence
          Length = 675

 Score =  270 bits (136), Expect = 5e-69
 Identities = 217/244 (88%)
 Strand = Plus / Plus

                                                                       
Query: 391 tgaaaacactagaggtctatgatgggactgcaaagttcctcagagaactagaggtagatg 450
           ||||||||||||| || ||||||| ||| || |||||||| ||||| |||||  | ||||
Sbjct: 17  tgaaaacactagaagtttatgatgagacggccaagttcctaagagagctagaaatggatg 76

                                                                       
Query: 451 atgatgctctcacaaaagctattattggcaccataggggatgttgattcctatcagctac 510
           |||||  ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct: 77  atgattgtctcacaaaagctattattggtaccataggtgacgttgattcctaccagctgc 136

                                                                       
Query: 511 cagatgctaaaggttacagcagtctgatgcggtatttgttgggcatcactgaggaggaac 570
           ||||||||||||||||||||||||| ||||| || ||| |||||||||| | ||||||||
Sbjct: 137 cagatgctaaaggttacagcagtctaatgcgatacttgctgggcatcacggtggaggaac 196

                                                                       
Query: 571 gccagcaaaggcgtgaagagatactcgcaaccagcgtgaaggatttcaaggagtttgctg 630
           |||||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||
Sbjct: 197 gccagcaaagacgtgaagagatactatcaaccagcttgaaggatttcaaggagtttgctg 256

               
Query: 631 atgc 634
           ||||
Sbjct: 257 atgc 260

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  252 bits (127), Expect = 1e-63
 Identities = 157/167 (94%)
 Strand = Plus / Plus

                                                                            
Query: 187      aggttaattatgttggaaaagctggaaacctataccaaagtggataccagctcaatggaa 246
                ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 32086509 aggttaattatgttggaaaagctggaaacctgtaccaaagtggatatcagctcaatggaa 32086568

                                                                            
Query: 247      gtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagtta 306
                ||||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct: 32086569 gtgcctatgtcatctccaagcatataagcaatacgtggttgtgggaccgtgttcgagtta 32086628

                                                               
Query: 307      gtggtggagcatatggagggttttgtgattttgacactcattcaggt 353
                ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 32086629 gtggtggtgcatatggagggttttgtgattttgacacccattcaggt 32086675



 Score =  165 bits (83), Expect = 2e-37
 Identities = 146/167 (87%)
 Strand = Plus / Plus

                                                                            
Query: 366      ttgtcataccgtgatccgaacttgctgaaaacactagaggtctatgatgggactgcaaag 425
                ||||||||||||||||| || ||  ||||||||||||| || ||||||| ||| || |||
Sbjct: 32086806 ttgtcataccgtgatccaaatttattgaaaacactagaagtttatgatgagacggccaag 32086865

                                                                            
Query: 426      ttcctcagagaactagaggtagatgatgatgctctcacaaaagctattattggcaccata 485
                ||||| ||||| |||||  | |||||||||  ||||||||||||||||||||| ||||||
Sbjct: 32086866 ttcctaagagagctagaaatggatgatgattgtctcacaaaagctattattggtaccata 32086925

                                                               
Query: 486      ggggatgttgattcctatcagctaccagatgctaaaggttacagcag 532
                || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 32086926 ggtgacgttgattcctaccagctgccagatgctaaaggttacagcag 32086972



 Score =  113 bits (57), Expect = 7e-22
 Identities = 126/149 (84%)
 Strand = Plus / Plus

                                                                            
Query: 21       aaggaaggttgcttgataaacataacaagcgactcaaaaaatcttgaaaaatctggtcag 80
                ||||| |||||| || | ||||||||||| ||||  ||||||||||| ||||||    | 
Sbjct: 32086224 aaggacggttgcctggtcaacataacaagtgactggaaaaatcttgagaaatctaacaaa 32086283

                                                                            
Query: 81       catattgccaaatttcttgatgcactcccaagtgccccatccctgggaagtgatccatgg 140
                ||||||||||||||||||||| | || |||||| |  ||||||| |||||||||||||||
Sbjct: 32086284 catattgccaaatttcttgattcgctgccaagtactacatcccttggaagtgatccatgg 32086343

                                             
Query: 141      ctctctcgattgccttctgttaatgaagc 169
                || ||||||||||| |||||||| |||||
Sbjct: 32086344 ctttctcgattgccatctgttaacgaagc 32086372



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                            
Query: 530      cagtctgatgcggtatttgttgggcatcactgaggaggaacgccagcaaaggcgtgaaga 589
                |||||| ||||| || ||| |||||||||| | |||||||||||||||||| ||||||||
Sbjct: 32087296 cagtctaatgcgatacttgctgggcatcacggtggaggaacgccagcaaagacgtgaaga 32087355

                               
Query: 590      gatactcgcaaccag 604
                ||||||  |||||||
Sbjct: 32087356 gatactatcaaccag 32087370



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 602      cagcgtgaaggatttcaaggagtttgctgatgc 634
                |||| ||||||||||||||||||||||||||||
Sbjct: 32087470 cagcttgaaggatttcaaggagtttgctgatgc 32087502

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>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0486G03
          Length = 146713

 Score =  252 bits (127), Expect = 1e-63
 Identities = 157/167 (94%)
 Strand = Plus / Plus

                                                                         
Query: 187   aggttaattatgttggaaaagctggaaacctataccaaagtggataccagctcaatggaa 246
             ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 23165 aggttaattatgttggaaaagctggaaacctgtaccaaagtggatatcagctcaatggaa 23224

                                                                         
Query: 247   gtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagtta 306
             ||||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct: 23225 gtgcctatgtcatctccaagcatataagcaatacgtggttgtgggaccgtgttcgagtta 23284

                                                            
Query: 307   gtggtggagcatatggagggttttgtgattttgacactcattcaggt 353
             ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 23285 gtggtggtgcatatggagggttttgtgattttgacacccattcaggt 23331



 Score =  165 bits (83), Expect = 2e-37
 Identities = 146/167 (87%)
 Strand = Plus / Plus

                                                                         
Query: 366   ttgtcataccgtgatccgaacttgctgaaaacactagaggtctatgatgggactgcaaag 425
             ||||||||||||||||| || ||  ||||||||||||| || ||||||| ||| || |||
Sbjct: 23462 ttgtcataccgtgatccaaatttattgaaaacactagaagtttatgatgagacggccaag 23521

                                                                         
Query: 426   ttcctcagagaactagaggtagatgatgatgctctcacaaaagctattattggcaccata 485
             ||||| ||||| |||||  | |||||||||  ||||||||||||||||||||| ||||||
Sbjct: 23522 ttcctaagagagctagaaatggatgatgattgtctcacaaaagctattattggtaccata 23581

                                                            
Query: 486   ggggatgttgattcctatcagctaccagatgctaaaggttacagcag 532
             || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 23582 ggtgacgttgattcctaccagctgccagatgctaaaggttacagcag 23628



 Score =  113 bits (57), Expect = 7e-22
 Identities = 126/149 (84%)
 Strand = Plus / Plus

                                                                         
Query: 21    aaggaaggttgcttgataaacataacaagcgactcaaaaaatcttgaaaaatctggtcag 80
             ||||| |||||| || | ||||||||||| ||||  ||||||||||| ||||||    | 
Sbjct: 22880 aaggacggttgcctggtcaacataacaagtgactggaaaaatcttgagaaatctaacaaa 22939

                                                                         
Query: 81    catattgccaaatttcttgatgcactcccaagtgccccatccctgggaagtgatccatgg 140
             ||||||||||||||||||||| | || |||||| |  ||||||| |||||||||||||||
Sbjct: 22940 catattgccaaatttcttgattcgctgccaagtactacatcccttggaagtgatccatgg 22999

                                          
Query: 141   ctctctcgattgccttctgttaatgaagc 169
             || ||||||||||| |||||||| |||||
Sbjct: 23000 ctttctcgattgccatctgttaacgaagc 23028



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 530   cagtctgatgcggtatttgttgggcatcactgaggaggaacgccagcaaaggcgtgaaga 589
             |||||| ||||| || ||| |||||||||| | |||||||||||||||||| ||||||||
Sbjct: 23952 cagtctaatgcgatacttgctgggcatcacggtggaggaacgccagcaaagacgtgaaga 24011

                            
Query: 590   gatactcgcaaccag 604
             ||||||  |||||||
Sbjct: 24012 gatactatcaaccag 24026



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 602   cagcgtgaaggatttcaaggagtttgctgatgc 634
             |||| ||||||||||||||||||||||||||||
Sbjct: 24126 cagcttgaaggatttcaaggagtttgctgatgc 24158

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>ref|NM_112804.3| Arabidopsis thaliana ATPREP1/ATZNMP; metalloendopeptidase AT3G19170
            (ATPREP1/ATZNMP) mRNA, complete cds
          Length = 3466

 Score =  101 bits (51), Expect = 3e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 162  aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 221
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2725 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2784

                                                                        
Query: 222  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 281
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2785 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2844

                                                                        
Query: 282  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 341
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2845 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2904

                                                                       
Query: 342  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 400
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2905 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2963



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 459  ctcacaaaagctattattggcaccataggggatgttgattcctatcagctaccagatgct 518
            ||||| |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| 
Sbjct: 3022 ctcactaaagctattattggcaccatcggtgatgttgattcataccaattacctgatgcc 3081

                           
Query: 519  aaaggttacagcagt 533
            |||||||| ||||||
Sbjct: 3082 aaaggttatagcagt 3096

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>gb|AY091051.1| Arabidopsis thaliana putative metalloprotease (At3g19170) mRNA,
            complete cds
          Length = 3475

 Score =  101 bits (51), Expect = 3e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 162  aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 221
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2723 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2782

                                                                        
Query: 222  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 281
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2783 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2842

                                                                        
Query: 282  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 341
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2843 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2902

                                                                       
Query: 342  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 400
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2903 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2961



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 459  ctcacaaaagctattattggcaccataggggatgttgattcctatcagctaccagatgct 518
            ||||| |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| 
Sbjct: 3020 ctcactaaagctattattggcaccatcggtgatgttgattcataccaattacctgatgcc 3079

                           
Query: 519  aaaggttacagcagt 533
            |||||||| ||||||
Sbjct: 3080 aaaggttatagcagt 3094

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>gb|AY090240.1| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, complete cds
          Length = 3463

 Score =  101 bits (51), Expect = 3e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 162  aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 221
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2725 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2784

                                                                        
Query: 222  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 281
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2785 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2844

                                                                        
Query: 282  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 341
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2845 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2904

                                                                       
Query: 342  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 400
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2905 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2963



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 459  ctcacaaaagctattattggcaccataggggatgttgattcctatcagctaccagatgct 518
            ||||| |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| 
Sbjct: 3022 ctcactaaagctattattggcaccatcggtgatgttgattcataccaattacctgatgcc 3081

                           
Query: 519  aaaggttacagcagt 533
            |||||||| ||||||
Sbjct: 3082 aaaggttatagcagt 3096

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>gb|BT006362.1| Arabidopsis thaliana At3g19170/MVI11_8 gene, complete cds
          Length = 3243

 Score =  101 bits (51), Expect = 3e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 162  aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 221
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2659 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2718

                                                                        
Query: 222  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 281
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2719 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2778

                                                                        
Query: 282  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 341
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2779 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2838

                                                                       
Query: 342  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 400
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2839 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2897



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 459  ctcacaaaagctattattggcaccataggggatgttgattcctatcagctaccagatgct 518
            ||||| |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| 
Sbjct: 2956 ctcactaaagctattattggcaccatcggtgatgttgattcataccaattacctgatgcc 3015

                           
Query: 519  aaaggttacagcagt 533
            |||||||| ||||||
Sbjct: 3016 aaaggttatagcagt 3030

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>gb|BT002372.1| Arabidopsis thaliana clone U19043 putative metalloprotease
            (At3g19170) mRNA, complete cds
          Length = 3274

 Score =  101 bits (51), Expect = 3e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 162  aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 221
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2659 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2718

                                                                        
Query: 222  caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 281
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2719 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2778

                                                                        
Query: 282  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 341
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2779 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2838

                                                                       
Query: 342  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 400
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2839 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2897



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                        
Query: 459  ctcacaaaagctattattggcaccataggggatgttgattcctatcagctaccagatgct 518
            ||||| |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| 
Sbjct: 2956 ctcactaaagctattattggcaccatcggtgatgttgattcataccaattacctgatgcc 3015

                           
Query: 519  aaaggttacagcagt 533
            |||||||| ||||||
Sbjct: 3016 aaaggttatagcagt 3030

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>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11
          Length = 81875

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                         
Query: 241   atggaagtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttc 300
             |||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || ||||
Sbjct: 21444 atggcagtgcgtatgttatatcaaagcatattagcaatacatggttatgggatcgtgttc 21385

                                                  
Query: 301   gagttagtggtggagcatatggagggttttgtgattt 337
             | || |||||||| ||||||||||| || ||||||||
Sbjct: 21384 gtgtaagtggtggtgcatatggaggtttctgtgattt 21348



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 459   ctcacaaaagctattattggcaccataggggatgttgattcctatcagctaccagatgct 518
             ||||| |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| 
Sbjct: 21141 ctcactaaagctattattggcaccatcggtgatgttgattcataccaattacctgatgcc 21082

                           
Query: 519   aaaggttacagcag 532
             |||||||| |||||
Sbjct: 21081 aaaggttatagcag 21068

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>ref|NM_180631.1| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.2 mRNA, complete
            cds
          Length = 3432

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 252  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 311
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 312  ggagcatatggagggttttgtgattttga 340
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>ref|NM_180630.1| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.1 mRNA, complete
            cds
          Length = 3582

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 252  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 311
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 312  ggagcatatggagggttttgtgattttga 340
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>ref|NM_103851.3| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.3 mRNA, complete
            cds
          Length = 3576

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 252  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 311
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 312  ggagcatatggagggttttgtgattttga 340
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>gb|AY074305.1| Arabidopsis thaliana putative hydrogenase protein (At1g49630) mRNA,
            complete cds
          Length = 3598

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 252  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 311
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 312  ggagcatatggagggttttgtgattttga 340
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>gb|BT004376.1| Arabidopsis thaliana clone U19879 putative hydrogenase (At1g49630)
            mRNA, complete cds
          Length = 3274

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 252  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 311
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2746 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2805

                                         
Query: 312  ggagcatatggagggttttgtgattttga 340
            || ||||||||||| |  |||||||||||
Sbjct: 2806 ggtgcatatggaggttcctgtgattttga 2834

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>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                         
Query: 252   tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 311
             ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 67499 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 67558

                                          
Query: 312   ggagcatatggagggttttgtgattttga 340
             || ||||||||||| |  |||||||||||
Sbjct: 67559 ggtgcatatggaggttcctgtgattttga 67587

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>gb|AF326573.1| Dengue virus type 4 strain 814669, complete genome
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY243469.1| Chimeric Dengue virus vector p4(Delta30)-D2-CME, complete sequence
          Length = 15237

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6341 tgaaggatttcaaggagtttgc 6362

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>gb|AY243468.1| Chimeric Dengue virus vector p4-D2-CME, complete sequence
          Length = 15268

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6341 tgaaggatttcaaggagtttgc 6362

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>gb|AY243467.1| Chimeric Dengue virus vector p4(Delta30)-D2-ME, complete sequence
          Length = 15239

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY243466.1| Chimeric Dengue virus vector p4-D2-ME, complete sequence
          Length = 15270

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY376438.1| Dengue virus vector p4(Delta30), complete sequence
          Length = 15239

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AF375822.1|AF375822 Dengue virus type 4 recombinant clone 2A, complete genome
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AF326827.1| Dengue virus type 4 recombinant clone rDEN4del30, complete sequence
          Length = 10618

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AF326826.1| Dengue virus type 4 recombinant clone 2Adel30, complete sequence
          Length = 10618

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AF326825.1| Dengue virus type 4 recombinant clone rDEN4, complete sequence
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AF289029.1|AF289029 dengue virus type 4 China Guangzhou B5 strain genomic RNA,complete
            cds
          Length = 10665

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY947539.1| Dengue virus type 4 strain H241, complete genome
          Length = 10643

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6335 tgaaggatttcaaggagtttgc 6356

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>gb|M14931.2|DENSTRA Dengue virus type 4 polyprotein precursor, gene, complete cds
          Length = 10648

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY776330.1| Dengue virus type 4 strain Taiwan-2K0713 polyprotein gene, complete
            cds
          Length = 10353

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6320 tgaaggatttcaaggagtttgc 6341

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>gb|AY618993.1| Dengue virus type 4 strain ThD4_0734_00, complete genome
          Length = 10653

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6344 tgaaggatttcaaggagtttgc 6365

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>gb|AY618992.1| Dengue virus type 4 strain ThD4_0485_01, complete genome
          Length = 10649

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY618991.1| Dengue virus type 4 strain ThD4_0087_77, complete genome
          Length = 10650

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY618990.1| Dengue virus type 4 strain ThD4_0348_91, complete genome
          Length = 10650

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>gb|AY858050.1| Dengue virus type 4 strain SW38i polyprotein gene, partial cds
          Length = 10516

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6232 tgaaggatttcaaggagtttgc 6253

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>gb|AY858049.1| Dengue virus type 4 strain SW36i polyprotein gene, partial cds
          Length = 10114

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 5830 tgaaggatttcaaggagtttgc 5851

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>gb|AY656168.1| Chimeric dengue virus vector p4(delta30)-D3L-ME, complete sequence
          Length = 15256

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6360 tgaaggatttcaaggagtttgc 6381

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>gb|AY656167.1| Chimeric dengue virus vector p4-D3L-ME, complete sequence
          Length = 15287

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6360 tgaaggatttcaaggagtttgc 6381

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>gb|AY648301.1| Dengue virus type 4 vector p4, complete sequence
          Length = 15270

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 607  tgaaggatttcaaggagtttgc 628
            ||||||||||||||||||||||
Sbjct: 6343 tgaaggatttcaaggagtttgc 6364

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>emb|Z99287.1|CEY7A9D Caenorhabditis elegans YAC Y7A9D, complete sequence
          Length = 17156

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 52    actcaaaaaatcttgaaaaat 72
             |||||||||||||||||||||
Sbjct: 10496 actcaaaaaatcttgaaaaat 10476

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>emb|Z81495.1|CEF08G2 Caenorhabditis elegans Cosmid F08G2, complete sequence
          Length = 30846

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    actcaaaaaatcttgaaaaatctgg 76
             |||||||||||| ||||||||||||
Sbjct: 23308 actcaaaaaatcctgaaaaatctgg 23284

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>gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, complete sequence
          Length = 237423

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   actcattcaggtgtcttttc 361
             ||||||||||||||||||||
Sbjct: 81162 actcattcaggtgtcttttc 81143

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>gb|BC036982.1| Mus musculus thyrotroph embryonic factor, transcript variant 1, mRNA
            (cDNA clone MGC:46858 IMAGE:4976241), complete cds
          Length = 4222

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3460 actcattcaggtgtcttttc 3441

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>gb|BC017689.1| Mus musculus thyrotroph embryonic factor, transcript variant 2, mRNA
            (cDNA clone MGC:19233 IMAGE:4242534), complete cds
          Length = 4018

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3258 actcattcaggtgtcttttc 3239

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>ref|NM_153484.1| Mus musculus thyrotroph embryonic factor (Tef), transcript variant 2,
            mRNA
          Length = 4018

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3258 actcattcaggtgtcttttc 3239

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>ref|NM_017376.2| Mus musculus thyrotroph embryonic factor (Tef), transcript variant 1,
            mRNA
          Length = 4222

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3460 actcattcaggtgtcttttc 3441

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>gb|AY540631.1| Mus musculus thyrotroph embryonic factor alpha isoform (Tef) mRNA,
            complete cds, alternatively spliced
          Length = 4064

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3480 actcattcaggtgtcttttc 3461

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>gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, complete sequence
          Length = 157075

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 165    gaagccattgttatccctacacag 188
              ||||| ||||||||||||||||||
Sbjct: 155215 gaagcaattgttatccctacacag 155238

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>gb|AC132339.3| Mus musculus BAC clone RP24-165O21 from chromosome 5, complete sequence
          Length = 152574

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    tgttgggcatcactgaggag 566
              ||||||||||||||||||||
Sbjct: 113570 tgttgggcatcactgaggag 113551

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>gb|AC122232.3| Mus musculus BAC clone RP23-136G1 from chromosome 7, complete sequence
          Length = 182272

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    actcccaagtgccccatccc 123
              ||||||||||||||||||||
Sbjct: 121066 actcccaagtgccccatccc 121047

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>gb|AC004413.2| Homo sapiens PAC clone RP4-650P9 from 7, complete sequence
          Length = 114827

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 155    ttctgttaatgaagccattgttat 178
              |||||||||||||||||| |||||
Sbjct: 106110 ttctgttaatgaagccatagttat 106087

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>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20
              Contains the gene for a novel protein (zgc:63952), the 3'
              end of the gene for a novel protein similar to mouse and
              human importin 4 (IPO4), three genes for transposase, a
              novel gene and six CpG islands, complete sequence
          Length = 190000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    aaagctggaaacctatacca 223
              ||||||||||||||||||||
Sbjct: 144259 aaagctggaaacctatacca 144240

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>gb|AC092984.3| Homo sapiens 3 BAC RP11-113N11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 116831

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    ttgcttgataaacataacaa 48
             ||||||||||||||||||||
Sbjct: 63408 ttgcttgataaacataacaa 63389

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>gb|AC024606.11| Homo sapiens chromosome 10 clone RP11-360I20, complete sequence
          Length = 186533

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    caaaaaatcttgaaaaatct 74
             ||||||||||||||||||||
Sbjct: 96687 caaaaaatcttgaaaaatct 96706

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>dbj|AK141606.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630043H05 product:thyrotroph embryonic
            factor, full insert sequence
          Length = 4071

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3323 actcattcaggtgtcttttc 3304

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>dbj|AK147965.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270119N11 product:thyrotroph embryonic factor,
            full insert sequence
          Length = 4175

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3430 actcattcaggtgtcttttc 3411

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>dbj|AK154472.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630037E11
            product:thyrotroph embryonic factor, full insert sequence
          Length = 4186

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3441 actcattcaggtgtcttttc 3422

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>gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, complete sequence
          Length = 208509

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   actcattcaggtgtcttttc 361
             ||||||||||||||||||||
Sbjct: 27794 actcattcaggtgtcttttc 27813

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>emb|BX649307.12| Zebrafish DNA sequence from clone CH211-209P16 in linkage group 4,
             complete sequence
          Length = 164976

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ctcaaaaaatcttgaaaaat 72
             ||||||||||||||||||||
Sbjct: 14609 ctcaaaaaatcttgaaaaat 14628



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    caaaaaatcttgaaaaatct 74
             ||||||||||||||||||||
Sbjct: 14210 caaaaaatcttgaaaaatct 14229

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>dbj|AK009518.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310028D20 product:unclassifiable, full
           insert sequence
          Length = 1738

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 actcattcaggtgtcttttc 361
           ||||||||||||||||||||
Sbjct: 993 actcattcaggtgtcttttc 974

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>gb|BC023410.1| Mus musculus thyrotroph embryonic factor, mRNA (cDNA clone
            IMAGE:5054763), partial cds
          Length = 2688

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 1926 actcattcaggtgtcttttc 1907

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>dbj|AK010205.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310076L22 product:unclassifiable, full
           insert sequence
          Length = 813

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 actcattcaggtgtcttttc 361
           ||||||||||||||||||||
Sbjct: 68  actcattcaggtgtcttttc 49

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>dbj|AK042146.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630063M24 product:thyrotroph embryonic
            factor, full insert sequence
          Length = 4401

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 342  actcattcaggtgtcttttc 361
            ||||||||||||||||||||
Sbjct: 3656 actcattcaggtgtcttttc 3637

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>dbj|AK085437.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630024P09 product:unclassifiable, full
           insert sequence
          Length = 1388

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 342 actcattcaggtgtcttttc 361
           ||||||||||||||||||||
Sbjct: 643 actcattcaggtgtcttttc 624

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>gb|BC094169.1| Xenopus laevis cDNA clone MGC:115330 IMAGE:6948906, complete cds
          Length = 4388

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 552  ggcatcactgaggaggaacg 571
            ||||||||||||||||||||
Sbjct: 1160 ggcatcactgaggaggaacg 1179

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>gb|AC129207.4| Mus musculus chromosome 5 clone RP24-280N5, complete sequence
          Length = 165994

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    tgttgggcatcactgaggag 566
              ||||||||||||||||||||
Sbjct: 117870 tgttgggcatcactgaggag 117889

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>gb|AF040654.3| Caenorhabditis elegans cosmid R06B10, complete sequence
          Length = 40468

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    aaaaaatcttgaaaaatctg 75
             ||||||||||||||||||||
Sbjct: 38279 aaaaaatcttgaaaaatctg 38260


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,700,660
Number of Sequences: 3902068
Number of extensions: 5700660
Number of successful extensions: 108748
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108566
Number of HSP's gapped (non-prelim): 180
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result