ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40b06 |
|---|---|
| Clone Library Name | barley_pub |
>SRX_DROME (Q9VX10) Putative sulfiredoxin (EC 1.8.98.2)| Length = 162 Score = 58.5 bits (140), Expect = 2e-08 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 8/90 (8%) Frame = +2 Query: 230 IPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQ---VPIDVLEVDG-----VYYGFSGC 385 +P+ I+RP+ D +KVQ LM++I+ + PID+L + G Y+ F GC Sbjct: 66 VPMSVIQRPIPSVL--DEQKVQSLMETIKNETSEDEVPPIDLLWISGSEGGDYYFSFGGC 123 Query: 386 HRYEAHQRLGLPTIRCKVRRGTKETLRHHM 475 HR+EA++RL PTI+ K+ + T L H+M Sbjct: 124 HRFEAYKRLQRPTIKAKLVKSTLGDLYHYM 153
>SRXN1_MOUSE (Q9D975) Sulfiredoxin-1 (EC 1.8.98.2) (Neoplastic progression| protein 3) Length = 136 Score = 57.4 bits (137), Expect = 4e-08 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 6/91 (6%) Frame = +2 Query: 221 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVP-IDVLEVDGV-----YYGFSG 382 V +P+ + RPL DP KVQ L+D+I VP IDVL + G YY F G Sbjct: 40 VHNVPIAVLIRPLPSVL--DPAKVQSLVDTILADPDSVPPIDVLWIKGAQGGDYYYSFGG 97 Query: 383 CHRYEAHQRLGLPTIRCKVRRGTKETLRHHM 475 CHRY A+Q+L TI K+ R T LR ++ Sbjct: 98 CHRYAAYQQLQRETIPAKLVRSTLSDLRMYL 128
>SRXN1_HUMAN (Q9BYN0) Sulfiredoxin-1 (EC 1.8.98.2)| Length = 137 Score = 57.0 bits (136), Expect = 5e-08 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 6/91 (6%) Frame = +2 Query: 221 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVP-IDVLEVDGV-----YYGFSG 382 V +PL + RPL DP KVQ L+D+IR VP IDVL + G +Y F G Sbjct: 41 VHNVPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGG 98 Query: 383 CHRYEAHQRLGLPTIRCKVRRGTKETLRHHM 475 CHRY A+Q+L TI K+ + T LR ++ Sbjct: 99 CHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 129
>SRX1_YEAST (P36077) Sulfiredoxin (EC 1.8.98.2) (Sulphiredoxin)| Length = 127 Score = 47.4 bits (111), Expect = 4e-05 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 28/111 (25%) Frame = +2 Query: 227 EIPLEDIRRPLMRTRANDPEKVQELMDSIRVI------------------GLQVPIDVLE 352 EIPL +IRRPL DP+K+ ++ +++ I G P+DVL Sbjct: 12 EIPLSEIRRPLAPVL--DPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLG 69 Query: 353 V----DGVYYGFSGCHRYEAHQRLGLPT------IRCKVRRGTKETLRHHM 475 V +YY F GCHR +A+ R T +RC+V T +R ++ Sbjct: 70 VRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYL 120
>PARB_PSEPU (P0A152) Probable chromosome partitioning protein parB| Length = 290 Score = 40.4 bits (93), Expect = 0.005 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = +2 Query: 221 VMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEV-DGVYYGFSGCHRY 394 + +P+E ++R + R + DPE ++EL SIR G+ PI V + D Y +G R+ Sbjct: 36 LQHLPVELVQRGKYQPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRW 95 Query: 395 EAHQRLGLPTIRCKVR 442 A Q+ GL TI VR Sbjct: 96 RATQQAGLDTIPAMVR 111
>PARB_PSEPK (P0A151) Probable chromosome partitioning protein parB| Length = 290 Score = 40.4 bits (93), Expect = 0.005 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Frame = +2 Query: 221 VMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEV-DGVYYGFSGCHRY 394 + +P+E ++R + R + DPE ++EL SIR G+ PI V + D Y +G R+ Sbjct: 36 LQHLPVELVQRGKYQPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRW 95 Query: 395 EAHQRLGLPTIRCKVR 442 A Q+ GL TI VR Sbjct: 96 RATQQAGLDTIPAMVR 111
>PARB2_DEIRA (Q9RZE7) Probable chromosome 2 partitioning protein parB (Probable| chromosome II partitioning protein parB) Length = 293 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/66 (37%), Positives = 36/66 (54%) Frame = +2 Query: 269 RANDPEKVQELMDSIRVIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKVRRG 448 R+ D E++ EL +SIR G+ P+ V VDG Y +G R+ A Q GL + VR+ Sbjct: 46 RSFDLERLSELAESIRAHGVLQPLLVRSVDGQYEIVAGERRWRAAQLAGLAEVPVVVRQL 105 Query: 449 TKETLR 466 + E R Sbjct: 106 SNEQAR 111
>SRX1_SCHPO (Q9URV9) Putative sulfiredoxin (EC 1.8.98.2)| Length = 124 Score = 40.0 bits (92), Expect = 0.006 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 19/104 (18%) Frame = +2 Query: 221 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIR---------------VIGLQVPIDVLEV 355 ++E+ + ++ RP+ D KV +M+++ G P+DVL Sbjct: 12 IVELDMSELIRPIPPVL--DMNKVNSMMETMTGKTPPASCGLTSEDLEAGELPPVDVLTF 69 Query: 356 DG----VYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHM 475 Y+ F GCHR AH G +RCK+ + TLR ++ Sbjct: 70 KKSGKPYYFAFGGCHRLRAHDEAGRKKVRCKLVNCSPNTLRLYL 113
>PARB_CHLPN (Q9Z7M0) Probable chromosome partitioning protein parB| Length = 286 Score = 35.4 bits (80), Expect = 0.15 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%) Frame = +2 Query: 221 VMEIPLEDIR-RPLMRTRANDPEKVQELMDSIRVIGLQVPIDVLEV---DGVYYG--FSG 382 ++E+ ++DIR P R E++QEL+ SI+ +GL P V E+ D V Y +G Sbjct: 10 IIEVAIDDIRVSPFQPRRVFSNEELQELIASIKAVGLIHPPVVREICTGDRVLYYELIAG 69 Query: 383 CHRYEAHQRLGLPTI 427 R+ A Q G TI Sbjct: 70 ERRWRAMQLAGATTI 84
>PARB_NEIMB (Q9JXP5) Probable chromosome partitioning protein parB| Length = 286 Score = 32.3 bits (72), Expect = 1.3 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +2 Query: 212 GPVVMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGC 385 G + + ++DIR + R D E +QEL DSI+ G+ P+ V E Y +G Sbjct: 25 GDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGE 84 Query: 386 HRYEAHQRLGLPTIRCKVRRGTKET 460 R+ A Q GL I ++ + ET Sbjct: 85 RRWRAAQIAGLTEIPAVIKTISDET 109
>PARB_NEIMA (Q9JW77) Probable chromosome partitioning protein parB| Length = 286 Score = 32.3 bits (72), Expect = 1.3 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +2 Query: 212 GPVVMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGC 385 G + + ++DIR + R D E +QEL DSI+ G+ P+ V E Y +G Sbjct: 25 GDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGE 84 Query: 386 HRYEAHQRLGLPTIRCKVRRGTKET 460 R+ A Q GL I ++ + ET Sbjct: 85 RRWRAAQIAGLTEIPAVIKTISDET 109
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.8 bits (68), Expect = 3.7 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = +1 Query: 277 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 456 RS + + P H P R+ SR R P R SP RTP + PPR +R Sbjct: 281 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 340 Query: 457 N 459 + Sbjct: 341 S 341
>CYB_CAPSI (O78784) Cytochrome b| Length = 380 Score = 30.8 bits (68), Expect = 3.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 364 LLRILWMPSIRGSPAPRTPNHPLQSPP 444 +L +L+MP + G P TP +PL +PP Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLNTPP 266
>MAP1_SCHPO (P78926) Pheromone receptor transcription activator (MAP1 protein)| Length = 398 Score = 30.8 bits (68), Expect = 3.7 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Frame = +1 Query: 304 GQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTP----------NHPLQSPPRDQ 453 GQH + PPSTY+ RRSL + S P+TP + PL PPRD+ Sbjct: 264 GQHSVNSPPSTYKH---RRSLNK-----SFATRSEPQTPRKNKIRDSLQSSPLNFPPRDR 315
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.8 bits (68), Expect = 3.7 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = +1 Query: 277 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 456 RS + + P H P R+ SR R P R SP RTP + PPR +R Sbjct: 281 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 340 Query: 457 N 459 + Sbjct: 341 S 341
>CYB_OKAJO (Q6YLN1) Cytochrome b| Length = 379 Score = 30.8 bits (68), Expect = 3.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 364 LLRILWMPSIRGSPAPRTPNHPLQSPP 444 +L +L+MP + G P TP +PL +PP Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLSTPP 266
>CYB_HEMJE (O78783) Cytochrome b| Length = 379 Score = 30.8 bits (68), Expect = 3.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 364 LLRILWMPSIRGSPAPRTPNHPLQSPP 444 +L +L+MP + G P TP +PL +PP Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLNTPP 266
>CYB_ALCLI (O99257) Cytochrome b| Length = 379 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%) Frame = +1 Query: 364 LLRILWMPSIRGSPAPRTPNHPLQSPP--RDQRNTAAPYAMNRWL 492 +L +L+ P + G P TP +PL +PP + + YA+ RW+ Sbjct: 240 MLLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRWI 284
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.8 bits (68), Expect = 3.7 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = +1 Query: 277 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 456 RS + + P H P R+ SR R P R SP RTP + PPR +R Sbjct: 279 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 338 Query: 457 N 459 + Sbjct: 339 S 339
>TNPA_BACTU (P10021) Transposase for transposon Tn4430| Length = 987 Score = 30.8 bits (68), Expect = 3.7 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -1 Query: 337 RYLEADDTDAVHELLHLLRIVSTRSH*RPTDIFQRDLHHHRAF---LLRVAQWEEAS 176 +++ DD + L + R+H R DIF HH+AF L+ +W E S Sbjct: 443 KHVYDDDGNINRHYYELAALTELRNHIRSGDIFVSGSRHHKAFDDYLIPYDEWNEVS 499
>CYB_THRSW (Q9B6F0) Cytochrome b| Length = 379 Score = 30.4 bits (67), Expect = 4.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +1 Query: 364 LLRILWMPSIRGSPAPRTPNHPLQSPP 444 LL +L+ P I G P TP +PL +PP Sbjct: 240 LLLVLFFPDILGDPDNYTPANPLNTPP 266
>VGLG_HHV2H (P13290) Glycoprotein G| Length = 699 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +1 Query: 322 RPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQRNTAAP 471 R P+ + +R +R P I G AP TP P Q+P +D + P Sbjct: 585 RTPNPNKPPPARPGPIRPTLPPGILGPLAPNTPRPPAQAPAKDMPSGPTP 634
>RF1_BDEBA (Q6MRK9) Peptide chain release factor 1 (RF-1)| Length = 357 Score = 30.0 bits (66), Expect = 6.3 Identities = 13/41 (31%), Positives = 24/41 (58%) Frame = +2 Query: 224 MEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVPIDV 346 ++IP+ D+R MR++ + + V ++RV+ L IDV Sbjct: 213 IKIPMSDVRIETMRSQGSGGQSVNRTESAVRVVHLPTGIDV 253
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.0 bits (66), Expect = 6.3 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +1 Query: 277 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 456 RS + + + P H P R+ SRR P R SP RTP + PPR +R Sbjct: 282 RSKSRSRSRSRSPSHSRPRRRHRSRSRRRP-----SPRRRPSPRRRTPPRRMPPPPRHRR 336 Query: 457 N 459 + Sbjct: 337 S 337
>RL10_SYNEL (Q8DM26) 50S ribosomal protein L10| Length = 178 Score = 29.6 bits (65), Expect = 8.2 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +2 Query: 263 RTRANDPEKVQELMDSIRVIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKVR 442 RT AN E V EL + +R + + ID Y G S + QRL CKV Sbjct: 6 RTLANKKEIVAELKERLRESQMALVID-------YQGLSDAEMKDLRQRLRKCNASCKVT 58 Query: 443 RGT 451 + T Sbjct: 59 KNT 61
>PARB_XYLFA (Q9PB63) Probable chromosome partitioning protein parB| Length = 310 Score = 29.6 bits (65), Expect = 8.2 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +2 Query: 263 RTRANDPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGCHRYEAHQRLGLPTIRCKV 439 R ++P K+ EL DSI+ G+ PI V E+D ++ +G R+ A Q GL + V Sbjct: 59 RREMSEP-KLAELADSIKAQGVIQPIIVRELDVDMFEIVAGERRWRASQLAGLTEVPVLV 117 Query: 440 R 442 R Sbjct: 118 R 118
>CYB_RHIUN (Q96071) Cytochrome b| Length = 379 Score = 29.6 bits (65), Expect = 8.2 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 364 LLRILWMPSIRGSPAPRTPNHPLQSPP 444 L+ +L+ P I G P TP +PL +PP Sbjct: 240 LILVLFFPDILGDPDNYTPANPLSTPP 266 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,463,196 Number of Sequences: 219361 Number of extensions: 1806455 Number of successful extensions: 6422 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 6057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6405 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
