ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X76642.1|LLGRPEDK L.lactis MG1363 grpE and dnaK genes 40 2.3
2emb|BX530059.4| Zebrafish DNA sequence from clone DKEYP-111B3 in... 40 2.3
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.3
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.3
5emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.3
6gb|AF016443.1| Caenorhabditis elegans cosmid C17E7, complete seq... 38 9.2
7emb|AL022394.3|HS511B24 Human DNA sequence from clone RP3-511B24... 38 9.2
8gb|AC146862.24| Medicago truncatula clone mth2-174p12, complete ... 38 9.2
9gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequ... 38 9.2
10emb|BX537314.17| Zebrafish DNA sequence from clone CH211-120E1 i... 38 9.2
11gb|AC013640.7| Homo sapiens chromosome 15, clone RP11-16L14, com... 38 9.2
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.2
13gb|AE004464.1| Pseudomonas aeruginosa PAO1, section 25 of 529 of... 38 9.2
14gb|AC136289.2| Homo sapiens chromosome 3 clone RP11-584G1, compl... 38 9.2
15emb|BX323007.11| Zebrafish DNA sequence from clone CH211-262K23 ... 38 9.2
16gb|AC007429.11|AC007429 Homo sapiens, clone hRPK.70_A_1, complet... 38 9.2
17emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4,... 38 9.2
18emb|AJ288335.1|RRU288335 Rhytidium rugosum internal transcribed ... 38 9.2
19emb|AJ288334.1|RRU288334 Rhytidium rugosum internal transcribed ... 38 9.2

>emb|X76642.1|LLGRPEDK L.lactis MG1363 grpE and dnaK genes
          Length = 5915

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 153 tctttgatgatttattcaaa 172
           ||||||||||||||||||||
Sbjct: 905 tctttgatgatttattcaaa 924



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>emb|BX530059.4| Zebrafish DNA sequence from clone DKEYP-111B3 in linkage group 21,
             complete sequence
          Length = 179045

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   atgatttattcaaaaacaga 178
             ||||||||||||||||||||
Sbjct: 50512 atgatttattcaaaaacaga 50531



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      tgacgagggtcaaacctgtc 38
               ||||||||||||||||||||
Sbjct: 8702439 tgacgagggtcaaacctgtc 8702458



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      tgacgagggtcaaacctgtc 38
               ||||||||||||||||||||
Sbjct: 8702322 tgacgagggtcaaacctgtc 8702341



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>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 195500

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     tgacgagggtcaaacctgtc 38
              ||||||||||||||||||||
Sbjct: 139730 tgacgagggtcaaacctgtc 139711



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>gb|AF016443.1| Caenorhabditis elegans cosmid C17E7, complete sequence
          Length = 43254

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 164 ttattcaaaaacaganctttga 185
           ||||||||||||||| ||||||
Sbjct: 699 ttattcaaaaacagatctttga 720



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>emb|AL022394.3|HS511B24 Human DNA sequence from clone RP3-511B24 on chromosome 20q11.2-12
              Contains the 3' end of the TOP1 gene for topoisomerase
              (DNA) I, the PLCG1 gene for phospholipase C gamma 1, the 3'
              end of the TIX1 gene for triple homeobox 1, a ribosomal
              protein L23 (RPL23) pseudogene, a novel gene, the 5' end of
              a novel gene and a CpG island, complete sequence
          Length = 146547

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 109    acatggtcctttttgtgaa 127
              |||||||||||||||||||
Sbjct: 140202 acatggtcctttttgtgaa 140184



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>gb|AC146862.24| Medicago truncatula clone mth2-174p12, complete sequence
          Length = 114731

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 156  ttgatgatttattcaaaaa 174
            |||||||||||||||||||
Sbjct: 7044 ttgatgatttattcaaaaa 7062



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>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence
          Length = 121626

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 156   ttgatgatttattcaaaaa 174
             |||||||||||||||||||
Sbjct: 41484 ttgatgatttattcaaaaa 41466



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>emb|BX537314.17| Zebrafish DNA sequence from clone CH211-120E1 in linkage group 19,
             complete sequence
          Length = 168538

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 159   atgatttattcaaaaacag 177
             |||||||||||||||||||
Sbjct: 38313 atgatttattcaaaaacag 38331



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>gb|AC013640.7| Homo sapiens chromosome 15, clone RP11-16L14, complete sequence
          Length = 149555

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 155   tttgatgatttattcaaaa 173
             |||||||||||||||||||
Sbjct: 47477 tttgatgatttattcaaaa 47495



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 158      gatgatttattcaaaaaca 176
                |||||||||||||||||||
Sbjct: 17140843 gatgatttattcaaaaaca 17140861



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>gb|AE004464.1| Pseudomonas aeruginosa PAO1, section 25 of 529 of the complete genome
          Length = 11680

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 101  gcgcaagtacatggtcctt 119
            |||||||||||||||||||
Sbjct: 3251 gcgcaagtacatggtcctt 3233



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>gb|AC136289.2| Homo sapiens chromosome 3 clone RP11-584G1, complete sequence
          Length = 191776

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 155   tttgatgatttattcaaaa 173
             |||||||||||||||||||
Sbjct: 78529 tttgatgatttattcaaaa 78511



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>emb|BX323007.11| Zebrafish DNA sequence from clone CH211-262K23 in linkage group 19,
             complete sequence
          Length = 130807

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 159   atgatttattcaaaaacag 177
             |||||||||||||||||||
Sbjct: 32277 atgatttattcaaaaacag 32295



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>gb|AC007429.11|AC007429 Homo sapiens, clone hRPK.70_A_1, complete sequence
          Length = 160025

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 155   tttgatgatttattcaaaa 173
             |||||||||||||||||||
Sbjct: 25607 tttgatgatttattcaaaa 25625



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>emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018J19,
             complete sequence
          Length = 169559

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 158   gatgatttattcaaaaaca 176
             |||||||||||||||||||
Sbjct: 85140 gatgatttattcaaaaaca 85158



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>emb|AJ288335.1|RRU288335 Rhytidium rugosum internal transcribed spacer 1 (ITS1), clone 002
          Length = 340

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 121 ttgtgaaagcgtaatccga 139
           |||||||||||||||||||
Sbjct: 257 ttgtgaaagcgtaatccga 275



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>emb|AJ288334.1|RRU288334 Rhytidium rugosum internal transcribed spacer 1 (ITS1), clone 001
          Length = 340

 Score = 38.2 bits (19), Expect = 9.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 121 ttgtgaaagcgtaatccga 139
           |||||||||||||||||||
Sbjct: 257 ttgtgaaagcgtaatccga 275


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,021,731
Number of Sequences: 3902068
Number of extensions: 1021731
Number of successful extensions: 74488
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74385
Number of HSP's gapped (non-prelim): 103
length of query: 187
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 165
effective length of database: 17,147,199,772
effective search space: 2829287962380
effective search space used: 2829287962380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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