>LBXCO_MOUSE (Q8BX46) Ladybird homeobox corepressor 1 (Transcriptional|
           corepressor Corl1)
          Length = 964

 Score = 35.8 bits (81), Expect = 0.028
 Identities = 21/59 (35%), Positives = 33/59 (55%)
 Frame = -2

Query: 212 MATDRAAPTQQARPAGGGELRSSLHPLPGPLGGSWRLLAPDPG*SFTSTSILAAARPCS 36
           +A D    T+++ P+GG ELR    PL GP  G+ ++ AP+      ST++ AA  P +
Sbjct: 735 VADDVVRRTERSPPSGGYELREPCGPLGGP--GAAKVYAPERDEHVKSTAVAAALGPAA 791

>E1BL_ADE07 (P03245) E1B protein, large T-antigen|
          Length = 492

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 245 NCEVLVVVATAMATDRAAPTQQARPAGGGELRSSLHPLPGPLGGSWRLLAPD 90
           N  +L   A+  + D   PT  A  + GG         PGP GG    L P+
Sbjct: 32  NLRLLASAASGSSRDTETPTDHASGSAGGAAGGQSESRPGPSGGGVADLFPE 83

>E1B9_ADE07 (P04490) Early E1B 9 kDa protein|
          Length = 88

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 245 NCEVLVVVATAMATDRAAPTQQARPAGGGELRSSLHPLPGPLGGSWRLLAPD 90
           N  +L   A+  + D   PT  A  + GG         PGP GG    L P+
Sbjct: 32  NLRLLASAASGSSRDTETPTDHASGSAGGAAGGQSESRPGPSGGGVADLFPE 83

>PALF_NEUCR (Q7SGZ5) pH-response regulator protein palF/rim-8|
          Length = 927

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 82  YPGSGANNRHDPPKGPGRG*SELLSSPPP 168
           +P SG+ N HD P+  G+      SSPPP
Sbjct: 890 FPASGSGNVHDSPREQGQQARSDSSSPPP 918

>DCOA_SALTI (Q8XGX8) Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)|
          Length = 590

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 224 VATAMATDRAAPTQQARPAGGGELRSSLHPLPGPLGGS-WRLLAPD 90
           + TA+    +AP Q A PAG G       P+  PL G+ W+++A +
Sbjct: 500 LTTAVPAASSAPVQAAAPAGAGT------PVTAPLAGNIWKVIATE 539

>PRDM8_MOUSE (Q8BZ97) PR domain zinc finger protein 8 (PR domain-containing|
           protein 8)
          Length = 687

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
 Frame = -2

Query: 215 AMATDRAAPTQQARPAGGGEL----RSSLHPLPGPLGGSWRLLAPDPG 84
           A ATD A  T +   AGGG        S  P  G  G   +LLAP PG
Sbjct: 399 AAATDGAGGTAEDPDAGGGVAGGGSNGSSTPAAGSPGAPEKLLAPRPG 446

>COBL_MYCTU (Q10671) Precorrin-6Y C(5,15)-methyltransferase [decarboxylating]|
           (EC 2.1.1.132) (Precorrin-6 methyltransferase)
           (Precorrin-6Y methylase)
          Length = 390

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 227 VVATAMATDRAAPTQQARPAGGGELRSSLHPLPGPLGG--SWRLLAP 93
           +VA A+  +  A    A    GGELR   H L  PLGG   WR   P
Sbjct: 335 LVANAVTVESEAALAHAYSRLGGELRRFQHYLGEPLGGFTGWRPQLP 381

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/54 (33%), Positives = 22/54 (40%)
 Frame = -2

Query: 245 NCEVLVVVATAMATDRAAPTQQARPAGGGELRSSLHPLPGPLGGSWRLLAPDPG 84
           +C  +   A   A    AP   A+PAG   L +   P PGP  G      P PG
Sbjct: 136 SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP----GPGPG 185

>HIF1A_ONCMY (Q98SW2) Hypoxia-inducible factor 1 alpha (HIF-1 alpha) (HIF1|
           alpha)
          Length = 766

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 49  AAARMDVEVNDYPGSGANNRHDPPKGPGRG*SELLSSPPPAGLAC 183
           ++ R+  EV+ YPGS  N        P    S  L++P PA   C
Sbjct: 593 SSVRLTQEVHSYPGSPFNAPGSLTASPALAASPALAAPEPADSPC 637

>TSYL3_HUMAN (Q9H489) Testis-specific Y-encoded-like protein 3 (TSPY-like 3)|
          Length = 355

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 200 RAAPTQQARPAGGGELRSSLHPLPGP 123
           R  P  +AR AGG   R SLHP  GP
Sbjct: 26  RTVPAARAREAGG---RGSLHPAAGP 48

>NECP2_RAT (Q6P756) Adaptin ear-binding coat-associated protein 2 (NECAP-2)|
          Length = 263

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -2

Query: 236 VLVVVATAMATDRAAPTQQARPAGGGELRSSLHPLPGPLGGSWRLLAPDPG*SFTSTSIL 57
           + + +A     + AA   + RPA  G     L  LP P GG    L P  G  F+  S++
Sbjct: 158 IKINIANMRKKEGAAGAPRTRPASAG----GLSLLPPPPGGKMSTLIPPSGEQFSGGSLV 213

>MIPR_LYMST (Q25410) Putative molluscan insulin-related peptide(s) receptor|
            precursor (EC 2.7.10.1) [Contains: Putative molluscan
            insulin-related peptide(s) receptor alpha chain; Putative
            molluscan insulin-related peptide(s) receptor beta chain]
          Length = 1607

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 197  AAPTQQARPAGGGELRSSLH 138
            AAP Q   P GGG+ +SS H
Sbjct: 1355 AAPRQSLTPCGGGQFKSSTH 1374

>DMRT1_HUMAN (Q9Y5R6) Doublesex- and mab-3-related transcription factor 1 (DM|
           domain expressed in testis protein 1)
          Length = 373

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 215 AMATDRAAPTQQARPAGGGELRSSLHPLPGP-----LGGSWRL 102
           A+A D A+  +   P GG  +++SL  LPGP      G  W++
Sbjct: 234 ALAADSASG-EVGNPLGGSPVKNSLRGLPGPYVPGQTGNQWQM 275

>PURK_SYNP7 (Q54975) Phosphoribosylaminoimidazole carboxylase ATPase subunit|
           (EC 4.1.1.21) (AIR carboxylase) (AIRC)
          Length = 395

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
 Frame = -2

Query: 194 APTQQARPAGGGELRSSLHPLPGPLGGSWRLLAP---DPG*SFTSTSILAAARPCSLPAT 24
           +P Q     GGG+L   L P    LG S  +  P   DP  +    ++LAA    +  A 
Sbjct: 7   SPVQHVGVIGGGQLAWMLAPAAQQLGMSLHVQTPNDHDPAVAIADQTVLAAVADAAATAK 66

Query: 23  XLQ 15
             Q
Sbjct: 67  LAQ 69

>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (S1-1 protein)
          Length = 852

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 185 QQARPAGGGELRSSLHPLPGP 123
           QQA P GG EL   L PLP P
Sbjct: 178 QQALPLGGRELSQGLLPLPQP 198

>LBXCO_RAT (P84551) Ladybird homeobox corepressor 1|
          Length = 964

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 212 MATDRAAPTQQARPAGGGELRSSLHPLPGPLGGSWRLLAPDPG*SFTSTSILAAARPCS 36
           +A D    T+++ P GG ELR    PL GP     ++  P+      S +  AA  P +
Sbjct: 735 VADDVVRRTERSPPNGGYELREPCGPLGGPAAA--KVYVPERDEHVKSAAAAAALGPAA 791

>DCOA_SALTY (Q03030) Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)|
          Length = 590

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 224 VATAMATDRAAPTQQARPAGGGELRSSLHPLPGPLGGS-WRLLAPD 90
           +  A+    +AP Q A PAG G       P+  PL G+ W+++A +
Sbjct: 500 LTAAVPAASSAPVQAAAPAGAGT------PVTAPLAGNIWKVIATE 539


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,141,399
Number of Sequences: 219361
Number of extensions: 645409
Number of successful extensions: 2010
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)