ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475456.1| Oryza sativa (japonica cultivar-group), predic... 113 3e-22
2gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
3gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome... 113 3e-22
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 113 3e-22
5dbj|AK062926.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 3e-22
6dbj|AK064162.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 8e-20
7gb|AY107510.1| Zea mays PCO078171 mRNA sequence 80 5e-12
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
9dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
10dbj|AK121388.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 4e-09
11ref|XM_475454.1| Oryza sativa (japonica cultivar-group), predic... 46 0.063
12emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 46 0.063
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.063
14gb|AC157361.7| Mus musculus chromosome 7, clone RP23-207H22, com... 44 0.25
15gb|AC129196.5| Mus musculus BAC clone RP24-161C8 from chromosome... 44 0.25
16emb|BX005005.19| Zebrafish DNA sequence from clone DKEY-70O15 in... 42 0.99
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
18dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
19ref|NM_188097.1| Oryza sativa (japonica cultivar-group), Ozsa852... 40 3.9
20gb|AC123744.8| Mus musculus chromosome 7, clone RP24-120F8, comp... 40 3.9
21gb|AC004494.1| Homo sapiens chromosome 16, cosmid clone 390H2 (L... 40 3.9
22gb|AC004224.1| Homo sapiens chromosome 16, cosmid clone 306E5 (L... 40 3.9
23gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
24ref|XM_618024.2| PREDICTED: Bos taurus similar to carboxypeptida... 40 3.9
25ref|XM_323971.1| Neurospora crassa OR74A predicted protein (NCU0... 40 3.9
26ref|XM_363432.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 3.9
27ref|XM_953766.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.9
28gb|DQ410266.1| HIV-1 isolate H22v2ed23 from USA envelope glycopr... 40 3.9
29gb|DQ410263.1| HIV-1 isolate H22v2ed1 from USA envelope glycopro... 40 3.9
30gb|DQ410255.1| HIV-1 isolate H22v1ed5.3 from USA envelope glycop... 40 3.9
31ref|XM_537711.2| PREDICTED: Canis familiaris similar to Carbonic... 40 3.9
32emb|Z86062.1|HS121G13 Human DNA sequence from clone RP1-121G13 o... 40 3.9
33emb|AL078583.15|HSJ119H20 Human DNA sequence from clone RP1-119H... 40 3.9
34emb|AL807374.1|NCB13H18 Neurospora crassa DNA linkage group V BA... 40 3.9
35emb|BX072539.13| Zebrafish DNA sequence from clone CH211-286O24 ... 40 3.9
36emb|AL645971.12| Mouse DNA sequence from clone RP23-378J19 on ch... 40 3.9
37gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosom... 40 3.9
38gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, comple... 40 3.9
39dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
40gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromoso... 40 3.9
41dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.9
42emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on ch... 40 3.9
43dbj|AK105130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
44emb|BX294005.7| Mouse DNA sequence from clone RP23-132O17 on chr... 40 3.9
45gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.9
46emb|AL807820.4| Mouse DNA sequence from clone RP23-418L18 on chr... 40 3.9
47emb|AL672253.7| Mouse DNA sequence from clone RP23-13G19 on chro... 40 3.9 
>ref|XM_475456.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 303

 Score =  113 bits (57), Expect = 3e-22
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                       
Query: 50  cggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcc 109
           ||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||
Sbjct: 212 cggcggcgaggatggacgtggaggtgaacgactaccccgggtcaggacccaacaaccgcc 271

                        
Query: 110 atgaccctcccaa 122
           |||||||||||||
Sbjct: 272 atgaccctcccaa 284
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>gb|AC097175.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1119_H02,
             complete sequence
          Length = 138584

 Score =  113 bits (57), Expect = 3e-22
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                         
Query: 50    cggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcc 109
             ||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||
Sbjct: 37911 cggcggcgaggatggacgtggaggtgaacgactaccccgggtcaggacccaacaaccgcc 37970

                          
Query: 110   atgaccctcccaa 122
             |||||||||||||
Sbjct: 37971 atgaccctcccaa 37983



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 48    ggcggcggcgaggatggacgtggaggtgaacgactaccc 86
             ||||||| ||| || ||||||||||||||| ||||||||
Sbjct: 17783 ggcggcgacgacgacggacgtggaggtgaatgactaccc 17821



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    ggacgtggaggtgaacgactaccc 86
             ||||||||||||||| ||||||||
Sbjct: 18017 ggacgtggaggtgaatgactaccc 18040
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>gb|AC093952.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1004_E02,
              complete sequence
          Length = 127642

 Score =  113 bits (57), Expect = 3e-22
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                          
Query: 50     cggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcc 109
              ||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||
Sbjct: 114897 cggcggcgaggatggacgtggaggtgaacgactaccccgggtcaggacccaacaaccgcc 114956

                           
Query: 110    atgaccctcccaa 122
              |||||||||||||
Sbjct: 114957 atgaccctcccaa 114969



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 48    ggcggcggcgaggatggacgtggaggtgaacgactaccc 86
             ||||||| ||| || ||||||||||||||| ||||||||
Sbjct: 94769 ggcggcgacgacgacggacgtggaggtgaatgactaccc 94807



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    ggacgtggaggtgaacgactaccc 86
             ||||||||||||||| ||||||||
Sbjct: 95003 ggacgtggaggtgaatgactaccc 95026
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  113 bits (57), Expect = 3e-22
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                            
Query: 50       cggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcc 109
                ||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||
Sbjct: 23834076 cggcggcgaggatggacgtggaggtgaacgactaccccgggtcaggacccaacaaccgcc 23834135

                             
Query: 110      atgaccctcccaa 122
                |||||||||||||
Sbjct: 23834136 atgaccctcccaa 23834148



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 48       ggcggcggcgaggatggacgtggaggtgaacgactaccc 86
                ||||||| ||| || ||||||||||||||| ||||||||
Sbjct: 23813948 ggcggcgacgacgacggacgtggaggtgaatgactaccc 23813986



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 63       ggacgtggaggtgaacgactaccc 86
                ||||||||||||||| ||||||||
Sbjct: 23814182 ggacgtggaggtgaatgactaccc 23814205
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>dbj|AK062926.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-A02, full
           insert sequence
          Length = 516

 Score =  113 bits (57), Expect = 3e-22
 Identities = 69/73 (94%)
 Strand = Plus / Plus

                                                                       
Query: 50  cggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcc 109
           ||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||
Sbjct: 366 cggcggcgaggatggacgtggaggtgaacgactaccccgggtcaggacccaacaaccgcc 425

                        
Query: 110 atgaccctcccaa 122
           |||||||||||||
Sbjct: 426 atgaccctcccaa 438
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>dbj|AK064162.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-G07, full
           insert sequence
          Length = 671

 Score =  105 bits (53), Expect = 8e-20
 Identities = 69/73 (94%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                       
Query: 50  cggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcc 109
           ||||||||||||||||||||||||||||||||||||| ||||| ||  ||||||||||||
Sbjct: 270 cggcggcgaggatggacgtggaggtgaacgactaccccgggtcagg-accaacaaccgcc 328

                        
Query: 110 atgaccctcccaa 122
           |||||||||||||
Sbjct: 329 atgaccctcccaa 341
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>gb|AY107510.1| Zea mays PCO078171 mRNA sequence
          Length = 398

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                       
Query: 54  ggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgccatga 113
           ||||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 7   ggcgaggatggacatcgaggtcaacgactaccctgggtccggtgccaacaaccgccatga 66
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                            
Query: 51       ggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcca 110
                ||||||||||||||   | ||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 34668188 ggcggcgaggatggtgatcgaggtcaacgactaccctggctccggcgccaacaaccgcca 34668129

                   
Query: 111      tga 113
                |||
Sbjct: 34668128 tga 34668126



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 79      gactacccggggtccggcgccaacaaccgcca 110
               ||||||||| | ||||||||||||| ||||||
Sbjct: 9710883 gactacccgagctccggcgccaacagccgcca 9710852
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>dbj|AP004331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0085D07
          Length = 172483

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                          
Query: 51     ggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcca 110
              ||||||||||||||   | ||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 120205 ggcggcgaggatggtgatcgaggtcaacgactaccctggctccggcgccaacaaccgcca 120146

                 
Query: 111    tga 113
              |||
Sbjct: 120145 tga 120143
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>dbj|AK121388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128J12, full
           insert sequence
          Length = 832

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 51  ggcggcgaggatggacgtggaggtgaacgactacccggggtccggcgccaacaaccgcca 110
           ||||||||||||||   | ||||| ||||||||||| || ||||||||||||||||||||
Sbjct: 387 ggcggcgaggatggtgatcgaggtcaacgactaccctggctccggcgccaacaaccgcca 446

              
Query: 111 tga 113
           |||
Sbjct: 447 tga 449
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>ref|XM_475454.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 573

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 48  ggcggcggcgaggatggacgtggaggtgaacgactaccc 86
           ||||||| ||| || ||||||||||||||| ||||||||
Sbjct: 153 ggcggcgacgacgacggacgtggaggtgaatgactaccc 191



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 63  ggacgtggaggtgaacgactaccc 86
           ||||||||||||||| ||||||||
Sbjct: 387 ggacgtggaggtgaatgactaccc 410
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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
              complete sequence
          Length = 164805

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 231    tagtacttcacagttcacaccat 253
              |||||||||||||||||||||||
Sbjct: 141718 tagtacttcacagttcacaccat 141740
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 231      tagtacttcacagttcacaccat 253
                |||||||||||||||||||||||
Sbjct: 31564035 tagtacttcacagttcacaccat 31564057
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>gb|AC157361.7| Mus musculus chromosome 7, clone RP23-207H22, complete sequence
          Length = 188319

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    gctgttgctactactactagta 235
              ||||||||||||||||||||||
Sbjct: 129832 gctgttgctactactactagta 129853
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>gb|AC129196.5| Mus musculus BAC clone RP24-161C8 from chromosome 7, complete sequence
          Length = 156253

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 214    gctgttgctactactactagta 235
              ||||||||||||||||||||||
Sbjct: 109751 gctgttgctactactactagta 109772
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>emb|BX005005.19| Zebrafish DNA sequence from clone DKEY-70O15 in linkage group 13,
             complete sequence
          Length = 153184

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   tgctactactactagtacttc 239
             |||||||||||||||||||||
Sbjct: 64309 tgctactactactagtacttc 64289
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 211      atagctgttgctactactactagta 235
                ||||||||| |||||||||||||||
Sbjct: 27413092 atagctgttactactactactagta 27413116
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>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0544G09
          Length = 137481

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 211   atagctgttgctactactactagta 235
             ||||||||| |||||||||||||||
Sbjct: 39887 atagctgttactactactactagta 39911
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>ref|NM_188097.1| Oryza sativa (japonica cultivar-group), Ozsa8529 predicted mRNA
          Length = 987

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 79  gactacccggggtccggcgccaacaaccgcca 110
           ||||||||| | ||||||||||||| ||||||
Sbjct: 710 gactacccgagctccggcgccaacagccgcca 741
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>gb|AC123744.8| Mus musculus chromosome 7, clone RP24-120F8, complete sequence
          Length = 160977

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 34     aggctgcagggccgggcggcggcg 57
              ||||||||||||||||| ||||||
Sbjct: 134306 aggctgcagggccgggccgcggcg 134283
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>gb|AC004494.1| Homo sapiens chromosome 16, cosmid clone 390H2 (LANL), complete
             sequence
          Length = 37648

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggaagctttcttccctgcag 20
             ||||||||||||||||||||
Sbjct: 36758 ggaagctttcttccctgcag 36777
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>gb|AC004224.1| Homo sapiens chromosome 16, cosmid clone 306E5 (LANL), complete
             sequence
          Length = 41495

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     ggaagctttcttccctgcag 20
             ||||||||||||||||||||
Sbjct: 10921 ggaagctttcttccctgcag 10940
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>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0542B04, complete sequence
          Length = 182823

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   gctgttgctactactactagtact 237
             |||| |||||||||||||||||||
Sbjct: 72871 gctgctgctactactactagtact 72894
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>ref|XM_618024.2| PREDICTED: Bos taurus similar to carboxypeptidase Z isoform 1
          (LOC537837), mRNA
          Length = 2044

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 42 gggccgggcggcggcgagga 61
          ||||||||||||||||||||
Sbjct: 57 gggccgggcggcggcgagga 38
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>ref|XM_323971.1| Neurospora crassa OR74A predicted protein (NCU04616.1) partial mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 214 gctgttgctactactactagtact 237
           ||||||||||||||||||| ||||
Sbjct: 772 gctgttgctactactactactact 795
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>ref|XM_363432.1| Magnaporthe grisea 70-15 predicted protein (MG01358.4) partial
          mRNA
          Length = 525

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 47 gggcggcggcgaggatggacgtgg 70
          ||||||||||||||||||| ||||
Sbjct: 31 gggcggcggcgaggatggaggtgg 8
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>ref|XM_953766.1| Neurospora crassa OR74A hypothetical protein (NCU04616.1) partial
           mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 214 gctgttgctactactactagtact 237
           ||||||||||||||||||| ||||
Sbjct: 772 gctgttgctactactactactact 795
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>gb|DQ410266.1| HIV-1 isolate H22v2ed23 from USA envelope glycoprotein (env) gene,
           complete cds
          Length = 2589

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 ttgctactactactagtact 237
           ||||||||||||||||||||
Sbjct: 473 ttgctactactactagtact 454
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>gb|DQ410263.1| HIV-1 isolate H22v2ed1 from USA envelope glycoprotein (env) gene,
           complete cds
          Length = 2589

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 ttgctactactactagtact 237
           ||||||||||||||||||||
Sbjct: 473 ttgctactactactagtact 454
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>gb|DQ410255.1| HIV-1 isolate H22v1ed5.3 from USA envelope glycoprotein (env) gene,
           complete cds
          Length = 2589

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 218 ttgctactactactagtact 237
           ||||||||||||||||||||
Sbjct: 473 ttgctactactactagtact 454
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>ref|XM_537711.2| PREDICTED: Canis familiaris similar to Carbonic anhydrase IV
          precursor (Carbonate dehydratase IV) (CA-IV)
          (LOC480591), mRNA
          Length = 1124

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 41 agggccgggcggcggcgagg 60
          ||||||||||||||||||||
Sbjct: 46 agggccgggcggcggcgagg 27
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>emb|Z86062.1|HS121G13 Human DNA sequence from clone RP1-121G13 on chromosome 6q16 Contains
             the 3' end of the RNAH gene for an RNA helicase, the 5'
             end of the SIM1 gene for single-minded homolog 1
             (Drosophila), an RP42 homolog pseudogene a novel gene and
             three CpG islands, complete sequence
          Length = 176932

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 214   gctgttgctactactactagtact 237
             ||||||||||||||||||| ||||
Sbjct: 49549 gctgttgctactactactattact 49526
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>emb|AL078583.15|HSJ119H20 Human DNA sequence from clone RP1-119H20 on chromosome 6q25.3-27
             Contains a CpG island, complete sequence
          Length = 128710

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 214   gctgttgctactactactagtact 237
             ||||||||||||||||||| ||||
Sbjct: 90494 gctgttgctactactactactact 90471
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>emb|AL807374.1|NCB13H18 Neurospora crassa DNA linkage group V BAC contig B13H18
          Length = 122576

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 214   gctgttgctactactactagtact 237
             ||||||||||||||||||| ||||
Sbjct: 36329 gctgttgctactactactactact 36306
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>emb|BX072539.13| Zebrafish DNA sequence from clone CH211-286O24 in linkage group 6,
             complete sequence
          Length = 78217

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ctactactactagtacttca 240
             ||||||||||||||||||||
Sbjct: 57911 ctactactactagtacttca 57930
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>emb|AL645971.12| Mouse DNA sequence from clone RP23-378J19 on chromosome 11 Vontains the
             5' end of the gene for novel protein similar to human RAP1
             GTPase activating protein 1 RAP1GA1,,a novel gene and
             three CpG islands, complete sequence
          Length = 102898

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   actactactagtacttcaca 242
             ||||||||||||||||||||
Sbjct: 81104 actactactagtacttcaca 81123
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>gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosome ul, complete sequence
          Length = 191648

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tgcagggccgggcggcggcg 57
              ||||||||||||||||||||
Sbjct: 173294 tgcagggccgggcggcggcg 173275
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>gb|AC092630.3| Homo sapiens BAC clone RP11-321C18 from 2, complete sequence
          Length = 185947

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 251    catgcattataaaccaagaa 270
              ||||||||||||||||||||
Sbjct: 154873 catgcattataaaccaagaa 154854
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>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0038F12
          Length = 190014

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 79     gactacccggggtccggcgccaacaaccgcca 110
              ||||||||| | ||||||||||||| ||||||
Sbjct: 148886 gactacccgagctccggcgccaacagccgcca 148855
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>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete sequence
          Length = 230767

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tgcagggccgggcggcggcg 57
              ||||||||||||||||||||
Sbjct: 126073 tgcagggccgggcggcggcg 126054
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 33      gaggctgcagggccgggcggcggcgaggatgg 64
               |||||||||| || ||||| ||||||||||||
Sbjct: 3363631 gaggctgcagcgcggggcgacggcgaggatgg 3363600
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>emb|AL672110.10| Mouse DNA sequence from clone RP23-338D24 on chromosome X, complete
              sequence
          Length = 167407

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 263    accaagaaaagttgatgttt 282
              ||||||||||||||||||||
Sbjct: 124139 accaagaaaagttgatgttt 124120
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>dbj|AK105130.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F05, full
           insert sequence
          Length = 696

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 79  gactacccggggtccggcgccaacaaccgcca 110
           ||||||||| | ||||||||||||| ||||||
Sbjct: 420 gactacccgagctccggcgccaacagccgcca 451
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>emb|BX294005.7| Mouse DNA sequence from clone RP23-132O17 on chromosome X, complete
             sequence
          Length = 116919

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   tagccatagctgttgctact 225
             ||||||||||||||||||||
Sbjct: 21910 tagccatagctgttgctact 21929
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 214      gctgttgctactactactagtact 237
                |||| |||||||||||||||||||
Sbjct: 20538598 gctgctgctactactactagtact 20538621
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>emb|AL807820.4| Mouse DNA sequence from clone RP23-418L18 on chromosome X, complete
             sequence
          Length = 150030

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 263   accaagaaaagttgatgttt 282
             ||||||||||||||||||||
Sbjct: 58118 accaagaaaagttgatgttt 58137
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>emb|AL672253.7| Mouse DNA sequence from clone RP23-13G19 on chromosome 2, complete
             sequence
          Length = 182150

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   gctgttgctactactactagtact 237
             ||||||||||||||||||| ||||
Sbjct: 99221 gctgttgctactactactactact 99244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,508,187
Number of Sequences: 3902068
Number of extensions: 2508187
Number of successful extensions: 59523
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59042
Number of HSP's gapped (non-prelim): 480
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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