ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal40a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SGT1_DROME (Q9W032) SGT1 protein homolog ecdysoneless 35 0.25
2DMXL2_HUMAN (Q8TDJ6) Protein DmX-like 2 (Rabconnectin-3) 32 2.1
3TBP7_CAEEL (P54816) TAT-binding homolog 7 31 2.7
4SRCA_HUMAN (Q86TD4) Sarcalumenin precursor 31 2.7
5IF2_STRMU (Q8DVP9) Translation initiation factor IF-2 31 3.6
6GPMI_HALSA (Q9HNY7) 2,3-bisphosphoglycerate-independent phosphog... 30 4.6
7PHF20_HUMAN (Q9BVI0) PHD finger protein 20 (Hepatocellular carci... 30 6.1
8M6PBP_PIG (Q5BLZ2) Mannose-6-phosphate receptor-binding protein ... 30 7.9
9FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3 30 7.9

>SGT1_DROME (Q9W032) SGT1 protein homolog ecdysoneless|
          Length = 684

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
 Frame = -3

Query: 283 VADEQPVETH---------PEDQHDGASKIH-INGLDDLEDHLPCMDTFGAARPVDTIGL 134
           +  E+P  TH         PED  D  S++      DD+E +L  +   G+  P+D    
Sbjct: 531 IQPEEPDSTHVRNFLDFVIPEDNWDSTSEMSDYADEDDMESNLNALSGGGSVFPLDRQIQ 590

Query: 133 FYVHTSVEEAEEGARQRSGDGEKSQEPEVEDDPLDGV 23
            Y+     E  + +  +S  G+K   P+ ++D  D +
Sbjct: 591 SYMEQMDRELAQTSVGKSFHGKKKTAPQADEDDFDDI 627



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>DMXL2_HUMAN (Q8TDJ6) Protein DmX-like 2 (Rabconnectin-3)|
          Length = 3036

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/81 (27%), Positives = 33/81 (40%)
 Frame = -3

Query: 277  DEQPVETHPEDQHDGASKIHINGLDDLEDHLPCMDTFGAARPVDTIGLFYVHTSVEEAEE 98
            DE+P+     + HD A       LD+ ED              D +GL    T   E ++
Sbjct: 1970 DEEPLNLDWGEDHDSA-------LDEEED--------------DAVGLVMKSTDAREKDK 2008

Query: 97   GARQRSGDGEKSQEPEVEDDP 35
             + Q++ D      P+ EDDP
Sbjct: 2009 QSDQKASDPNMLLTPQEEDDP 2029



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>TBP7_CAEEL (P54816) TAT-binding homolog 7|
          Length = 1242

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
 Frame = -3

Query: 322 QSPVGSGRQIVGRVADEQPVETHPEDQHDGASKIHINGLDDLEDHLPCMDTFGAARP--- 152
           +SPV   R+   R+  EQP E    D       + + G  ++   LP  +  G A     
Sbjct: 165 ESPVRRTRKAAKRLGSEQPEENLAADD-----PLPMEGGGEIV--LPIAEIDGMAEQENE 217

Query: 151 --VDTIGLFYVHTSVEEAEEGARQRSGDGEKSQEPEVEDDPLDGVSME 14
             ++ IG        EE EEGA +    GEK  E E EDD  +  S E
Sbjct: 218 DLIEKIGR-------EEEEEGAEEDEQSGEKDPEEE-EDDSSNAESSE 257



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>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor|
          Length = 932

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 17/136 (12%)
 Frame = -3

Query: 361 LLQSEHPEQRRSLQSPVGSGRQIVGRVADEQPVETHPEDQHDGASKIHINGL-DDLEDHL 185
           + + +  E     +S  GSG +  G V  E+  E   ED  DGAS     G  ++  +  
Sbjct: 299 MTEEDADEASSEEESGDGSGSEEEGGVPSEEESE---EDSGDGASSEEAEGASEEATEPQ 355

Query: 184 PCMDTFGAARPVDTIGLFYVHTSVE-----EAEE----------GARQRSGDGEKSQEPE 50
              +   A  P +   L     S E     EAEE          G  Q  GD ++++EP+
Sbjct: 356 EAGEPQEAREPQEGGDLQEAEESQEGGDPQEAEEPQEGGAPQEGGEPQEGGDPQEAREPQ 415

Query: 49  VEDDPLDGVSM-EGTG 5
              +P +G  + E TG
Sbjct: 416 EAREPQEGAELPEATG 431



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>IF2_STRMU (Q8DVP9) Translation initiation factor IF-2|
          Length = 916

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +1

Query: 235 RHADLRDGSLRAVHQQRVQRSAFRIRPGSARIVAVRDVRSEGEAEVDEDHVPGRAQDQGW 414
           + A  ++GS+ A  +    + A R RP +    A R+ R++ EAE  +++   R Q++G 
Sbjct: 67  KEAKAQEGSVAAEPKAAATKPAGRPRPQNRNFKAEREARAKAEAERRQNNGERRNQNKGQ 126

Query: 415 ARHRDD 432
              + D
Sbjct: 127 NNRQKD 132



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>GPMI_HALSA (Q9HNY7) 2,3-bisphosphoglycerate-independent phosphoglycerate|
           mutase (EC 5.4.2.1) (Phosphoglyceromutase)
           (BPG-independent PGAM) (iPGM)
          Length = 508

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
 Frame = -3

Query: 301 RQIVGRVADEQPVETHPEDQHDGASKIHINGLDDLEDHLPCMDTFGAARPVDTIGLF--- 131
           RQ+   +AD  P +   +        + +  + + ++   C   F AA P DT+G     
Sbjct: 259 RQLTRLLADIHPADWDADGIETNPPAVPVVTMTEYDETFDCPVAFPAAEPTDTLGAVLAA 318

Query: 130 YVHTSVEEAE-----------EGARQRSGDGEKSQEPEVEDDP 35
           + HT +  AE            G R+ + DGE     +  D P
Sbjct: 319 HDHTQLRVAESEKYAHVTYFLNGGREVAFDGETRTIVDSPDVP 361



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>PHF20_HUMAN (Q9BVI0) PHD finger protein 20 (Hepatocellular carcinoma-associated|
           antigen 58) (Glioma-expressed antigen 2) (Transcription
           factor TZP) (Novel zinc finger protein)
          Length = 1012

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 23/95 (24%), Positives = 37/95 (38%)
 Frame = -3

Query: 352 SEHPEQRRSLQSPVGSGRQIVGRVADEQPVETHPEDQHDGASKIHINGLDDLEDHLPCMD 173
           ++HP  RR +   VG+  +   R+ +  P      D  +G   IH    +   D   C D
Sbjct: 2   TKHPPNRRGISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCWD 61

Query: 172 TFGAARPVDTIGLFYVHTSVEEAEEGARQRSGDGE 68
           +    RP++ I L          +EG  +  G  E
Sbjct: 62  S-PYLRPLEKIQL---------RKEGLHEEDGSSE 86



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>M6PBP_PIG (Q5BLZ2) Mannose-6-phosphate receptor-binding protein 1 (Cargo|
           selection protein TIP47)
          Length = 439

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -3

Query: 283 VADEQPVETHPEDQHDGASKIHINGLDDLEDHLPCMDTFGAARPVDTIGLFYVHTSVEEA 104
           V+  QP+ +  E Q   AS+    GLD LE++LP +         DT  L  V + V EA
Sbjct: 76  VSGAQPILSKLEPQLTSASEYAHRGLDKLEENLPILQQPSEKVLADTKEL--VSSKVSEA 133

Query: 103 EE 98
            E
Sbjct: 134 RE 135



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>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = -3

Query: 388 GRDLHPLRPLLQSEHPEQRRSLQSPVGSGRQIVGRVADEQPVETHPEDQH 239
           G   HP RP   + HP+Q   LQ P              Q ++ HP  QH
Sbjct: 390 GLPQHPQRPQHPAPHPQQHSQLQPPHSQ------HPPPHQHIQHHPNHQH 433


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,754,492
Number of Sequences: 219361
Number of extensions: 1792282
Number of successful extensions: 6448
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6436
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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