ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal40a06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 861 Score = 375 bits (189), Expect = e-100 Identities = 481/577 (83%), Gaps = 1/577 (0%) Strand = Plus / Plus Query: 19 tcgagacc-ccgtcgagaggatcatcttcgacttccggttcctggctcttctcgccgtcg 77 |||||||| ||||||||||| | |||||||| ||| | ||||||||||||||||| || | Sbjct: 284 tcgagaccaccgtcgagagggtgatcttcgatttcagattcctggctcttctcgcggttg 343 Query: 78 ccggatcgctggcgggctccctcctctgcttcctcaacggatgtgtgtacataaaagagg 137 ||||||| ||||| || |||||||||||||||||||| || ||||| ||||||||||||| Sbjct: 344 ccggatcactggccggatccctcctctgcttcctcaatggttgtgtttacataaaagagg 403 Query: 138 cctattgtgtctactggacgagctgcgccaaaggtgtccatacagggcagatggtcctca 197 | || | || || ||| || |||| |||||| ||||||||||||||||||||||||| Sbjct: 404 cttacagcgtgtattggtcgggctgtctcaaaggcgtccatacagggcagatggtcctca 463 Query: 198 aggtcgtcgaggccattgatgtgtatcttgctggcaccgtcatgctgatcttcgggatgg 257 | || ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||||| Sbjct: 464 aagttgtcgaagccattgatgtttatctcgctggaacagtcatgctgatctttgggatgg 523 Query: 258 gtctctacgggctgttcatcagcaacgcgtccaacgatctgccttccggatccgaccggg 317 | | |||||||||||||||||||| | || | ||| | ||||| | || ||| | | Sbjct: 524 gcttgtacgggctgttcatcagcaatacttctactgatgttccttctgagtctgacagag 583 Query: 318 ctctgcaaggatcgtcgctgttcgggatgttcgctctgaaggagaggccgaagtggatga 377 ||||||| ||||| || | || |||||||| ||| | ||||| || || |||||||||| Sbjct: 584 ctctgcagggatcatccttatttgggatgtttgctttaaaggaaagaccaaagtggatga 643 Query: 378 agatcacgtccctggacgagctcaagaccaaggttgggcacgtcatcgtgatgatcctgc 437 |||| || ||||||||||| || || ||||| || ||||| |||||||| |||||||| | Sbjct: 644 agattacctccctggacgaactgaaaaccaaagtagggcatgtcatcgtcatgatccttc 703 Query: 438 tggtgaagatgttcgagcggagcaagatggtgaagatcaccacggggctggacctgctca 497 ||||||||||||||||| ||||||| ||||||||||| || |||||| |||||||||| | Sbjct: 704 tggtgaagatgttcgagaggagcaaaatggtgaagataacaacggggttggacctgctga 763 Query: 498 gctactcggtctgcatcttcctctcctcggcctccctctacatcctgcataacctccacc 557 |||||||||||||||||||||| || || || || || ||||||||||| ||||| ||| Sbjct: 764 gctactcggtctgcatcttcctgtcgtccgcttcactgtacatcctgcacaaccttcaca 823 Query: 558 ggcccgagcacgaggagtcggtgatgccccacttgta 594 |||| || || || || ||||| ||||| ||||||| Sbjct: 824 ggcctgaacaggatgactcggttatgccaaacttgta 860
>gb|AY108992.1| Zea mays PCO062765 mRNA sequence Length = 499 Score = 214 bits (108), Expect = 3e-52 Identities = 249/296 (84%) Strand = Plus / Plus Query: 251 gggatgggtctctacgggctgttcatcagcaacgcgtccaacgatctgccttccggatcc 310 ||||||||||||||||| || |||||||||||||| || || | | ||| | | |||| Sbjct: 12 gggatgggtctctacggcctcttcatcagcaacgctcccgccggtgttcctcctgaatcc 71 Query: 311 gaccgggctctgcaaggatcgtcgctgttcgggatgttcgctctgaaggagaggccgaag 370 ||||| || || || |||||| ||||||||||||||||| ||||||| | |||||| Sbjct: 72 gaccgtgccctcagcggctcgtcgttgttcgggatgttcgctttgaaggaacgcccgaag 131 Query: 371 tggatgaagatcacgtccctggacgagctcaagaccaaggttgggcacgtcatcgtgatg 430 |||||||| ||||| || || |||||||||||||| || || |||||||||||||||||| Sbjct: 132 tggatgaacatcacctcgcttgacgagctcaagacaaaagtggggcacgtcatcgtgatg 191 Query: 431 atcctgctggtgaagatgttcgagcggagcaagatggtgaagatcaccacggggctggac 490 || || || ||||||||||||||| |||||||||||||| ||| |||||||||||||| Sbjct: 192 attctacttgtgaagatgttcgagaagagcaagatggtgacgatagccacggggctggac 251 Query: 491 ctgctcagctactcggtctgcatcttcctctcctcggcctccctctacatcctgca 546 || |||||||||||| ||||||||||| | || || || || |||||||||||||| Sbjct: 252 ctcctcagctactcgatctgcatcttcttgtcgtcagcttctctctacatcctgca 307
>ref|XM_479396.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1073 Score = 192 bits (97), Expect = 1e-45 Identities = 169/193 (87%) Strand = Plus / Plus Query: 92 ggctccctcctctgcttcctcaacggatgtgtgtacataaaagaggcctattgtgtctac 151 |||||||||||||||||||||| || ||||||||||| ||||| || || ||||||| Sbjct: 386 ggctccctcctctgcttcctcagtggttgtgtgtacattaaagaagcataccatgtctac 445 Query: 152 tggacgagctgcgccaaaggtgtccatacagggcagatggtcctcaaggtcgtcgaggcc 211 ||||| ||||| | | ||||||||||||||||||||||||||||| | |||||||||| Sbjct: 446 tggacaagctgtgttagaggtgtccatacagggcagatggtcctcaggctcgtcgaggct 505 Query: 212 attgatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctg 271 || ||||||||||||||||| || ||||||||||| || ||||||||||| || |||||| Sbjct: 506 atcgatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctg 565 Query: 272 ttcatcagcaacg 284 ||||||||||||| Sbjct: 566 ttcatcagcaacg 578 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Plus Query: 344 atgttcgctctgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaag 403 ||||| ||| |||||||||| |||| |||||||| |||| || || || |||||||| Sbjct: 635 atgtttgctttgaaggagagaccgaggtggatgagaatcagctctctcgatgagctcaaa 694 Query: 404 accaaggttgggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaag 463 || ||| | || ||| ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 695 acgaagctgggccacatcatcgtgatgattctcctggtgaagatgttcgagaggagcaag 754 Query: 464 atggtgaagatcaccacggggctggacctgctcagctactcggtctgcatcttcctctcc 523 |||||| | ||||||||||| ||||||||||||||||| |||||||||||||| | || Sbjct: 755 atggtgcacatcaccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcg 814 Query: 524 tcggcctccctctacatcctgcataacct 552 ||||| ||||| ||||||||||| ||||| Sbjct: 815 tcggcttccctgtacatcctgcacaacct 843 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 44 ttcgacttccggttcctggctcttctcgccgtcgccgg 81 ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 350 ttcgatttccgtttcctggctctcctcgccgtcgccgg 387
>dbj|AK060061.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F12, full insert sequence Length = 1073 Score = 192 bits (97), Expect = 1e-45 Identities = 169/193 (87%) Strand = Plus / Plus Query: 92 ggctccctcctctgcttcctcaacggatgtgtgtacataaaagaggcctattgtgtctac 151 |||||||||||||||||||||| || ||||||||||| ||||| || || ||||||| Sbjct: 386 ggctccctcctctgcttcctcagtggttgtgtgtacattaaagaagcataccatgtctac 445 Query: 152 tggacgagctgcgccaaaggtgtccatacagggcagatggtcctcaaggtcgtcgaggcc 211 ||||| ||||| | | ||||||||||||||||||||||||||||| | |||||||||| Sbjct: 446 tggacaagctgtgttagaggtgtccatacagggcagatggtcctcaggctcgtcgaggct 505 Query: 212 attgatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctg 271 || ||||||||||||||||| || ||||||||||| || ||||||||||| || |||||| Sbjct: 506 atcgatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctg 565 Query: 272 ttcatcagcaacg 284 ||||||||||||| Sbjct: 566 ttcatcagcaacg 578 Score = 168 bits (85), Expect = 1e-38 Identities = 178/209 (85%) Strand = Plus / Plus Query: 344 atgttcgctctgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaag 403 ||||| ||| |||||||||| |||| |||||||| |||| || || || |||||||| Sbjct: 635 atgtttgctttgaaggagagaccgaggtggatgagaatcagctctctcgatgagctcaaa 694 Query: 404 accaaggttgggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaag 463 || ||| | || ||| ||||||||||||| || |||||||||||||||||| |||||||| Sbjct: 695 acgaagctgggccacatcatcgtgatgattctcctggtgaagatgttcgagaggagcaag 754 Query: 464 atggtgaagatcaccacggggctggacctgctcagctactcggtctgcatcttcctctcc 523 |||||| | ||||||||||| ||||||||||||||||| |||||||||||||| | || Sbjct: 755 atggtgcacatcaccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcg 814 Query: 524 tcggcctccctctacatcctgcataacct 552 ||||| ||||| ||||||||||| ||||| Sbjct: 815 tcggcttccctgtacatcctgcacaacct 843 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 44 ttcgacttccggttcctggctcttctcgccgtcgccgg 81 ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 350 ttcgatttccgtttcctggctctcctcgccgtcgccgg 387
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 188 bits (95), Expect = 2e-44 Identities = 194/227 (85%) Strand = Plus / Plus Query: 368 aagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggcacgtcatcgtg 427 |||||||||||||| || ||||||||||| || || ||||| || ||||| |||||||| Sbjct: 27579251 aagtggatgaagattacctccctggacgaactgaaaaccaaagtagggcatgtcatcgtc 27579310 Query: 428 atgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatcaccacggggctg 487 |||||||| |||||||||||||||||| ||||||| ||||||||||| || |||||| || Sbjct: 27579311 atgatccttctggtgaagatgttcgagaggagcaaaatggtgaagataacaacggggttg 27579370 Query: 488 gacctgctcagctactcggtctgcatcttcctctcctcggcctccctctacatcctgcat 547 |||||||| ||||||||||||||||||||||| || || || || || ||||||||||| Sbjct: 27579371 gacctgctgagctactcggtctgcatcttcctgtcgtccgcttcactgtacatcctgcac 27579430 Query: 548 aacctccaccggcccgagcacgaggagtcggtgatgccccacttgta 594 ||||| ||| |||| || || || || ||||| ||||| ||||||| Sbjct: 27579431 aaccttcacaggcctgaacaggatgactcggttatgccaaacttgta 27579477 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Plus Query: 357 aggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggc 416 ||||||| |||| |||||||| |||| || || || |||||||| || ||| | || | Sbjct: 27575946 aggagagaccgaggtggatgagaatcagctctctcgatgagctcaaaacgaagctgggcc 27576005 Query: 417 acgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatca 476 || ||||||||||||| || |||||||||||||||||| |||||||||||||| | |||| Sbjct: 27576006 acatcatcgtgatgattctcctggtgaagatgttcgagaggagcaagatggtgcacatca 27576065 Query: 477 ccacggggctggacctgctcagctactcggtctgcatcttcctctcctcggcctccctct 536 ||||||| ||||||||||||||||| |||||||||||||| | || ||||| ||||| | Sbjct: 27576066 ccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcgtcggcttccctgt 27576125 Query: 537 acatcctgcataacct 552 |||||||||| ||||| Sbjct: 27576126 acatcctgcacaacct 27576141 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 215 gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 274 ||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||||| Sbjct: 27575642 gatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctgttc 27575701 Query: 275 atcagcaacg 284 |||||||||| Sbjct: 27575702 atcagcaacg 27575711 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 41 atcttcgacttccggttcctggctcttctcgccgtcgccggatcgctggcgggctccctc 100 |||||||| ||| | ||||||||||||||||| || |||||||| ||||| || |||||| Sbjct: 27577656 atcttcgatttcagattcctggctcttctcgcggttgccggatcactggccggatccctc 27577715 Query: 101 ctctgcttcctcaa 114 |||||||||||||| Sbjct: 27577716 ctctgcttcctcaa 27577729 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 119 tgtgtgtacataaaagaggcctattgtgtctactggacgagctgcgccaaaggtgtccat 178 ||||||||||| ||||| || || |||||||||||| ||||| | | |||||||||| Sbjct: 27575364 tgtgtgtacattaaagaagcataccatgtctactggacaagctgtgttagaggtgtccat 27575423 Query: 179 acagggcagatggtcctcaaggtcgtcgaggc 210 ||||||||||||||||||| | |||||||||| Sbjct: 27575424 acagggcagatggtcctcaggctcgtcgaggc 27575455 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 215 gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 274 ||||| ||||| ||||| || |||||||||||||| |||||||| | |||||||||||| Sbjct: 27578676 gatgtttatctcgctggaacagtcatgctgatctttgggatgggcttgtacgggctgttc 27578735 Query: 275 atcagcaa 282 |||||||| Sbjct: 27578736 atcagcaa 27578743 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 166 caaaggtgtccatacagggcagatggtcctcaaggtcgtcgaggccattg 215 |||||| |||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 27577950 caaaggcgtccatacagggcagatggtcctcaaagttgtcgaagccattg 27577999 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 44 ttcgacttccggttcctggctcttctcgccgtcgccgg 81 ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 27575208 ttcgatttccgtttcctggctctcctcgccgtcgccgg 27575245 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 92 ggctccctcctctgcttcctca 113 |||||||||||||||||||||| Sbjct: 27575244 ggctccctcctctgcttcctca 27575265
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 188 bits (95), Expect = 2e-44 Identities = 194/227 (85%) Strand = Plus / Plus Query: 368 aagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggcacgtcatcgtg 427 |||||||||||||| || ||||||||||| || || ||||| || ||||| |||||||| Sbjct: 36244 aagtggatgaagattacctccctggacgaactgaaaaccaaagtagggcatgtcatcgtc 36303 Query: 428 atgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatcaccacggggctg 487 |||||||| |||||||||||||||||| ||||||| ||||||||||| || |||||| || Sbjct: 36304 atgatccttctggtgaagatgttcgagaggagcaaaatggtgaagataacaacggggttg 36363 Query: 488 gacctgctcagctactcggtctgcatcttcctctcctcggcctccctctacatcctgcat 547 |||||||| ||||||||||||||||||||||| || || || || || ||||||||||| Sbjct: 36364 gacctgctgagctactcggtctgcatcttcctgtcgtccgcttcactgtacatcctgcac 36423 Query: 548 aacctccaccggcccgagcacgaggagtcggtgatgccccacttgta 594 ||||| ||| |||| || || || || ||||| ||||| ||||||| Sbjct: 36424 aaccttcacaggcctgaacaggatgactcggttatgccaaacttgta 36470 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Plus Query: 357 aggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggc 416 ||||||| |||| |||||||| |||| || || || |||||||| || ||| | || | Sbjct: 32939 aggagagaccgaggtggatgagaatcagctctctcgatgagctcaaaacgaagctgggcc 32998 Query: 417 acgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatca 476 || ||||||||||||| || |||||||||||||||||| |||||||||||||| | |||| Sbjct: 32999 acatcatcgtgatgattctcctggtgaagatgttcgagaggagcaagatggtgcacatca 33058 Query: 477 ccacggggctggacctgctcagctactcggtctgcatcttcctctcctcggcctccctct 536 ||||||| ||||||||||||||||| |||||||||||||| | || ||||| ||||| | Sbjct: 33059 ccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcgtcggcttccctgt 33118 Query: 537 acatcctgcataacct 552 |||||||||| ||||| Sbjct: 33119 acatcctgcacaacct 33134 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 215 gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 274 ||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||||| Sbjct: 32635 gatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctgttc 32694 Query: 275 atcagcaacg 284 |||||||||| Sbjct: 32695 atcagcaacg 32704 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 41 atcttcgacttccggttcctggctcttctcgccgtcgccggatcgctggcgggctccctc 100 |||||||| ||| | ||||||||||||||||| || |||||||| ||||| || |||||| Sbjct: 34649 atcttcgatttcagattcctggctcttctcgcggttgccggatcactggccggatccctc 34708 Query: 101 ctctgcttcctcaa 114 |||||||||||||| Sbjct: 34709 ctctgcttcctcaa 34722 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 119 tgtgtgtacataaaagaggcctattgtgtctactggacgagctgcgccaaaggtgtccat 178 ||||||||||| ||||| || || |||||||||||| ||||| | | |||||||||| Sbjct: 32357 tgtgtgtacattaaagaagcataccatgtctactggacaagctgtgttagaggtgtccat 32416 Query: 179 acagggcagatggtcctcaaggtcgtcgaggc 210 ||||||||||||||||||| | |||||||||| Sbjct: 32417 acagggcagatggtcctcaggctcgtcgaggc 32448 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 215 gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 274 ||||| ||||| ||||| || |||||||||||||| |||||||| | |||||||||||| Sbjct: 35669 gatgtttatctcgctggaacagtcatgctgatctttgggatgggcttgtacgggctgttc 35728 Query: 275 atcagcaa 282 |||||||| Sbjct: 35729 atcagcaa 35736 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 166 caaaggtgtccatacagggcagatggtcctcaaggtcgtcgaggccattg 215 |||||| |||||||||||||||||||||||||| || ||||| ||||||| Sbjct: 34943 caaaggcgtccatacagggcagatggtcctcaaagttgtcgaagccattg 34992 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 44 ttcgacttccggttcctggctcttctcgccgtcgccgg 81 ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 32201 ttcgatttccgtttcctggctctcctcgccgtcgccgg 32238 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 92 ggctccctcctctgcttcctca 113 |||||||||||||||||||||| Sbjct: 32237 ggctccctcctctgcttcctca 32258
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 159 bits (80), Expect = 1e-35 Identities = 167/196 (85%) Strand = Plus / Plus Query: 357 aggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttgggc 416 ||||||| |||| |||||||| |||| || || || |||||||| || ||| | || | Sbjct: 139917 aggagagaccgaggtggatgagaatcagctctctcgatgagctcaaaacgaagctgggcc 139976 Query: 417 acgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggtgaagatca 476 || ||||||||||||| || |||||||||||||||||| |||||||||||||| | |||| Sbjct: 139977 acatcatcgtgatgattctcctggtgaagatgttcgagaggagcaagatggtgcacatca 140036 Query: 477 ccacggggctggacctgctcagctactcggtctgcatcttcctctcctcggcctccctct 536 ||||||| ||||||||||||||||| |||||||||||||| | || ||||| ||||| | Sbjct: 140037 ccacgggaatggacctgctcagctacgcggtctgcatcttcttgtcgtcggcttccctgt 140096 Query: 537 acatcctgcataacct 552 |||||||||| ||||| Sbjct: 140097 acatcctgcacaacct 140112 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Plus Query: 215 gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 274 ||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||||| Sbjct: 139613 gatgtgtatcttgctggaacagtcatgctgatttttgggatgggtctgtatgggctgttc 139672 Query: 275 atcagcaacg 284 |||||||||| Sbjct: 139673 atcagcaacg 139682 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 41 atcttcgacttccggttcctggctcttctcgccgtcgccggatcgctggcgggctccctc 100 |||||||| ||| | ||||||||||||||||| || |||||||| ||||| || |||||| Sbjct: 141627 atcttcgatttcagattcctggctcttctcgcggttgccggatcactggccggatccctc 141686 Query: 101 ctctgcttcctcaa 114 |||||||||||||| Sbjct: 141687 ctctgcttcctcaa 141700 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 119 tgtgtgtacataaaagaggcctattgtgtctactggacgagctgcgccaaaggtgtccat 178 ||||||||||| ||||| || || |||||||||||| ||||| | | |||||||||| Sbjct: 139335 tgtgtgtacattaaagaagcataccatgtctactggacaagctgtgttagaggtgtccat 139394 Query: 179 acagggcagatggtcctcaaggtcgtcgaggc 210 ||||||||||||||||||| | |||||||||| Sbjct: 139395 acagggcagatggtcctcaggctcgtcgaggc 139426 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 44 ttcgacttccggttcctggctcttctcgccgtcgccgg 81 ||||| ||||| ||||||||||| |||||||||||||| Sbjct: 139179 ttcgatttccgtttcctggctctcctcgccgtcgccgg 139216 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 92 ggctccctcctctgcttcctca 113 |||||||||||||||||||||| Sbjct: 139215 ggctccctcctctgcttcctca 139236
>ref|NM_121375.3| Arabidopsis thaliana unknown protein AT5G13720 mRNA, complete cds Length = 1012 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 354 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 413 |||||||||| || || ||||||||||||| || || || ||||| || ||||| || | Sbjct: 691 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 750 Query: 414 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 468 | || ||||| || ||||| ||||| ||||||||||||||| | ||||||||||| Sbjct: 751 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 805
>ref|NM_121376.2| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor AT5G13730 (SIGD) mRNA, complete cds Length = 1785 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 354 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 413 |||||||||| || || ||||||||||||| || || || ||||| || ||||| || | Sbjct: 1670 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 1611 Query: 414 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 468 | || ||||| || ||||| ||||| ||||||||||||||| | ||||||||||| Sbjct: 1610 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 1556
>gb|AY150387.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds Length = 820 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 354 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 413 |||||||||| || || ||||||||||||| || || || ||||| || ||||| || | Sbjct: 572 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 631 Query: 414 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 468 | || ||||| || ||||| ||||| ||||||||||||||| | ||||||||||| Sbjct: 632 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 686
>gb|AY096494.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds Length = 974 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 354 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 413 |||||||||| || || ||||||||||||| || || || ||||| || ||||| || | Sbjct: 691 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 750 Query: 414 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 468 | || ||||| || ||||| ||||| ||||||||||||||| | ||||||||||| Sbjct: 751 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 805
>dbj|AB021119.1| Arabidopsis thaliana sigD gene for RNA polymerase sigma subunit SigD and spliced variant SigD*, complete cds Length = 2975 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 354 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 413 |||||||||| || || ||||||||||||| || || || ||||| || ||||| || | Sbjct: 2451 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 2392 Query: 414 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 468 | || ||||| || ||||| ||||| ||||||||||||||| | ||||||||||| Sbjct: 2391 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 2337
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12 Length = 79259 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 354 tgaaggagaggccgaagtggatgaagatcacgtccctggacgagctcaagaccaaggttg 413 |||||||||| || || ||||||||||||| || || || ||||| || ||||| || | Sbjct: 72018 tgaaggagagaccaaaatggatgaagatcagctcacttgatgagcttaaaaccaaagtgg 72077 Query: 414 ggcacgtcatcgtgatgatcctgctggtgaagatgttcgagcggagcaagatggt 468 | || ||||| || ||||| ||||| ||||||||||||||| | ||||||||||| Sbjct: 72078 gacatgtcattgttatgattctgctagtgaagatgttcgagagaagcaagatggt 72132
>gb|AY110425.1| Zea mays CL28396_2 mRNA sequence Length = 1071 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 215 gatgtgtatcttgctggcaccgtcatgctgatcttcgggatgggtctctacgggctgttc 274 |||||||||||||||| || |||||| |||| || ||||||||||||||||| || ||| Sbjct: 179 gatgtgtatcttgctgaaacggtcatgttgatatttgggatgggtctctacggtctcttc 238 Query: 275 atcagcaacgc 285 |||||||||| Sbjct: 239 gtcagcaacgc 249
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 46.1 bits (23), Expect = 0.14 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Plus Query: 236 gtcatgctgatcttcgggatgggtctctacgggctgttcatcagcaa 282 ||||||||||| || ||||||||| | |||||| ||||||||||||| Sbjct: 15595 gtcatgctgatttt-gggatgggtatgtacgggttgttcatcagcaa 15640
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.14 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Plus Query: 236 gtcatgctgatcttcgggatgggtctctacgggctgttcatcagcaa 282 ||||||||||| || ||||||||| | |||||| ||||||||||||| Sbjct: 16136706 gtcatgctgatttt-gggatgggtatgtacgggttgttcatcagcaa 16136751
>emb|CT030723.18| Mouse DNA sequence from clone RP23-33L24 on chromosome 16, complete sequence Length = 241451 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 47 gacttccggttcctggctcttct 69 ||||||||||||||||||||||| Sbjct: 175932 gacttccggttcctggctcttct 175910
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.14 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Plus Query: 236 gtcatgctgatcttcgggatgggtctctacgggctgttcatcagcaa 282 ||||||||||| || ||||||||| | |||||| ||||||||||||| Sbjct: 16144947 gtcatgctgatttt-gggatgggtatgtacgggttgttcatcagcaa 16144992
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 cttctcgccgtcgccggatcgc 86 |||||||||||||||||||||| Sbjct: 3300016 cttctcgccgtcgccggatcgc 3299995
>gb|AC133874.10| Mus musculus chromosome 19, clone RP23-81N16, complete sequence Length = 215113 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 511 catcttcctctcctcggcctccctc 535 |||||||||||||||| |||||||| Sbjct: 178239 catcttcctctcctcgacctccctc 178263
>gb|AC126544.5| Homo sapiens chromosome 17, clone RP11-707O23, complete sequence Length = 172940 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ggctccctcctctgcttcctc 112 ||||||||||||||||||||| Sbjct: 91615 ggctccctcctctgcttcctc 91635
>dbj|AK091529.1| Homo sapiens cDNA FLJ34210 fis, clone FCBBF3021026 Length = 2546 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ggctccctcctctgcttcctc 112 ||||||||||||||||||||| Sbjct: 1044 ggctccctcctctgcttcctc 1064
>dbj|D21071.2| Rana catesbeiana mRNA for bullfrog skeletal muscle calcium release channel (ryanodine receptor) beta isoform(RyR3), complete cds Length = 16010 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 ggctccctcctctgcttcctc 112 ||||||||||||||||||||| Sbjct: 13410 ggctccctcctctgcttcctc 13390
>gb|AC004703.1|AC004703 Homo sapiens chromosome 17, clone hRPC.1164_O_3, complete sequence Length = 104147 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 ggctccctcctctgcttcctc 112 ||||||||||||||||||||| Sbjct: 63199 ggctccctcctctgcttcctc 63179
>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence Length = 199727 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 511 catcttcctctcctcggcctccct 534 |||||||||| ||||||||||||| Sbjct: 22300 catcttcctcccctcggcctccct 22277
>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete sequence Length = 1085720 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ggagaggccgaagtggatga 377 |||||||||||||||||||| Sbjct: 764039 ggagaggccgaagtggatga 764020
>ref|XM_603414.2| PREDICTED: Bos taurus similar to mitochondrial protein 18 kDa isoform a (LOC525071), mRNA Length = 1123 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 cggcctccctctacatcctg 544 |||||||||||||||||||| Sbjct: 401 cggcctccctctacatcctg 420
>ref|XM_955005.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial mRNA Length = 1254 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tcttcctctcctcggcctcc 532 |||||||||||||||||||| Sbjct: 1012 tcttcctctcctcggcctcc 993
>ref|XM_325692.1| Neurospora crassa OR74A hypothetical protein (NCU05838.1) partial mRNA Length = 1254 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tcttcctctcctcggcctcc 532 |||||||||||||||||||| Sbjct: 1012 tcttcctctcctcggcctcc 993
>ref|XM_567554.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNJ02640) partial mRNA Length = 809 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 ggagaggccgaagtggatga 377 |||||||||||||||||||| Sbjct: 679 ggagaggccgaagtggatga 698
>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research Institute) complete sequence Length = 225777 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tacagggcagatggtcctca 197 |||||||||||||||||||| Sbjct: 129896 tacagggcagatggtcctca 129877
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 378 agatcacgtccctggacgag 397 |||||||||||||||||||| Sbjct: 142470 agatcacgtccctggacgag 142451
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 555 accggcccgagcacgaggag 574 |||||||||||||||||||| Sbjct: 66259 accggcccgagcacgaggag 66240
>emb|BX470222.8| Zebrafish DNA sequence from clone DKEYP-120F10 in linkage group 23, complete sequence Length = 39795 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 gagaccccgtcgagaggatc 40 |||||||||||||||||||| Sbjct: 29525 gagaccccgtcgagaggatc 29506
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ccgaagtggatgaagatcac 384 |||||||||||||||||||| Sbjct: 3355421 ccgaagtggatgaagatcac 3355402
>gb|BC094980.1| Danio rerio cDNA clone IMAGE:7222334 Length = 2078 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 gagaccccgtcgagaggatc 40 |||||||||||||||||||| Sbjct: 14 gagaccccgtcgagaggatc 33
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 agatcacgtccctggacgag 397 |||||||||||||||||||| Sbjct: 2919285 agatcacgtccctggacgag 2919304
>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence Length = 179691 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 192 tcctcaaggtcgtcgaggccattg 215 |||||||||||||| ||||||||| Sbjct: 123832 tcctcaaggtcgtcaaggccattg 123809
>gb|BT024054.1| Zea mays clone EL01N0439D05 mRNA sequence Length = 1966 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 tcttcctctcctcggcctcc 532 |||||||||||||||||||| Sbjct: 1326 tcttcctctcctcggcctcc 1307
>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence Length = 174902 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 511 catcttcctctcctcggcctccct 534 |||||||||| ||||||||||||| Sbjct: 101434 catcttcctcccctcggcctccct 101457
>emb|AL606902.26| Mouse DNA sequence from clone RP23-167A12 on chromosome 4, complete sequence Length = 100421 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 cctccctctacatcctgcat 547 |||||||||||||||||||| Sbjct: 7814 cctccctctacatcctgcat 7833
>emb|AL645530.11| Mouse DNA sequence from clone RP23-92N10 on chromosome 11, complete sequence Length = 91481 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aggagaggccgaagtggatg 376 |||||||||||||||||||| Sbjct: 91035 aggagaggccgaagtggatg 91016
>emb|AL645484.14| Mouse DNA sequence from clone RP23-38A10 on chromosome 11, complete sequence Length = 161787 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 aggagaggccgaagtggatg 376 |||||||||||||||||||| Sbjct: 1554 aggagaggccgaagtggatg 1535 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,945,570 Number of Sequences: 3902068 Number of extensions: 4945570 Number of successful extensions: 98737 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98325 Number of HSP's gapped (non-prelim): 412 length of query: 639 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 616 effective length of database: 17,143,297,704 effective search space: 10560271385664 effective search space used: 10560271385664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
