ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39o10 |
|---|---|
| Clone Library Name | barley_pub |
>PR1_SAMNI (Q41359) Pathogenesis-related protein PR-1 type precursor| Length = 167 Score = 35.0 bits (79), Expect = 0.17 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NGR---LCFWSPGASSEAGRR 380 +CGH++ WR S R GC ++ C NG C +SP + AG+R Sbjct: 122 VCGHYTQVVWRNSVRIGCARVRCNNGAWFITCNYSP-PGNYAGQR 165
>PR1C_TOBAC (P09042) Pathogenesis-related protein 1C precursor (PR-1C)| Length = 168 Score = 33.9 bits (76), Expect = 0.39 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NG 332 +CGH++ WR S R GC ++ C NG Sbjct: 123 VCGHYTQVVWRNSVRVGCARVQCNNG 148
>PR1A_TOBAC (P08299) Pathogenesis-related protein 1A precursor (PR-1A)| Length = 168 Score = 33.9 bits (76), Expect = 0.39 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NG 332 +CGH++ WR S R GC ++ C NG Sbjct: 123 VCGHYTQVVWRNSVRVGCARVQCNNG 148
>PR04_LYCES (Q04108) Pathogenesis-related leaf protein 4 precursor (P4)| Length = 159 Score = 33.9 bits (76), Expect = 0.39 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NG 332 MCGH++ WR S R GC + C NG Sbjct: 114 MCGHYTQVVWRNSVRLGCGRARCNNG 139
>PR1B_TOBAC (P07053) Pathogenesis-related protein 1B precursor (PR-1B)| Length = 168 Score = 33.5 bits (75), Expect = 0.51 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NG 332 +CGH++ WR S R GC ++ C NG Sbjct: 123 VCGHYTQVVWRNSVRVGCARVKCNNG 148
>BRCA2_RAT (O35923) Breast cancer type 2 susceptibility protein homolog (Fanconi| anemia group D1 protein homolog) Length = 3343 Score = 33.5 bits (75), Expect = 0.51 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Frame = -2 Query: 421 LAEKNQVLEVKGNFLLPASEEAPGDQKQSLPFQHHILLQP----PLFEPLQYSEDQ*PHI 254 L E ++++E KG L P+ G K F HH+ L+P P + E Q PH+ Sbjct: 2253 LNEFDRIIESKGKSLTPSKSTPDGTIKDRRLFTHHMSLEPVTCGPFCSSKERQETQSPHV 2312
>PR1_ARATH (P33154) Pathogenesis-related protein 1 precursor (PR-1)| Length = 161 Score = 33.5 bits (75), Expect = 0.51 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NG 332 +CGH++ WR S R GC K+ C NG Sbjct: 116 VCGHYTQVVWRKSVRLGCAKVRCNNG 141
>RS15_HALMA (P05762) 30S ribosomal protein S15P/S13e (HmaS15) (HS11)| Length = 155 Score = 33.1 bits (74), Expect = 0.66 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = +1 Query: 298 EEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVTEIQRKRHSAPDV 474 E+A+ VE+ + P E+ LKL +E P PD +KVTEI + + PD+ Sbjct: 29 EDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEENEAEPDL 87
>PR1_HORVU (Q05968) Pathogenesis-related protein 1 precursor| Length = 164 Score = 32.0 bits (71), Expect = 1.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NGRLCF 344 +CGH++ WR S GC ++ C N R F Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVF 147
>PR13_HORVU (P35793) Pathogenesis-related protein PRB1-3 precursor (PR-1B)| (HV-8) Length = 164 Score = 32.0 bits (71), Expect = 1.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NGRLCF 344 +CGH++ WR S GC ++ C N R F Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVF 147
>PR12_HORVU (P35792) Pathogenesis-related protein PRB1-2 precursor| Length = 164 Score = 32.0 bits (71), Expect = 1.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NGRLCF 344 +CGH++ WR S GC ++ C N R F Sbjct: 118 VCGHYTQVVWRASTSIGCARVVCNNNRGVF 147
>BRCA2_MOUSE (P97929) Breast cancer type 2 susceptibility protein homolog (Fanconi| anemia group D1 protein homolog) Length = 3329 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Frame = -2 Query: 421 LAEKNQVLEVKGNFLLPASEEAPGDQKQSLPFQHHILLQPPLFEPLQYSED----Q*PHI 254 L E ++++E KG L P+ G K F HH+ L+P P S++ Q PH+ Sbjct: 2238 LNEFDRIIESKGKSLTPSKSTPDGTVKDRSLFTHHMSLEPVTCGPFCSSKERQGAQRPHL 2297
>RS15_HALSA (Q9HRA2) 30S ribosomal protein S15P/S13e| Length = 155 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Frame = +1 Query: 298 EEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEKVTEIQRKRHSAPDV- 474 E+A+ + VE+ + P ++ LKL +E P PD +KVTEI + P++ Sbjct: 30 EDAIEERVVELAEQGHDPSQIGLKLRDEGVQGTPVPDVKLATGKKVTEILEAHDAEPELP 89 Query: 475 -SFKGRVRKVAKM 510 F+ + K ++ Sbjct: 90 EDFRNLLEKAVRL 102
>YGGP_ECOLI (P52048) Hypothetical protein yggP| Length = 425 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/45 (37%), Positives = 27/45 (60%) Frame = +1 Query: 127 KGISNQIWRLYWASHQRFFRHMCMSAKVPAVVKLAKEALAENKCV 261 KG+S+ + L + F + + A VPAVV++A E LAE+ C+ Sbjct: 240 KGMSDPVQMLRALTGDAGFDDIFVYAAVPAVVEMADELLAEDGCL 284
>PR1A_LYCES (Q08697) Pathogenesis-related protein 1A1 precursor (PR-1A1)| Length = 175 Score = 30.4 bits (67), Expect = 4.3 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NG 332 +CGH++ WR S R GC ++ C +G Sbjct: 113 VCGHYTQVVWRKSVRLGCARVRCNSG 138
>UBCX_PICAN (O60015) Ubiquitin-conjugating enzyme E2-21 kDa (EC 6.3.2.19)| (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (Peroxin-4) Length = 188 Score = 30.4 bits (67), Expect = 4.3 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 11/48 (22%) Frame = +1 Query: 373 VEENYPL-PPKPDSFQQGEEKVTEIQRKRHSA----------PDVSFK 483 + NYPL PPK GEEK+ ++QRK S P+V+FK Sbjct: 67 IPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFK 114
>CRVP_TRIMU (P79845) Cysteine-rich venom protein precursor (TM-CRVP)| Length = 240 Score = 30.4 bits (67), Expect = 4.3 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Frame = +3 Query: 261 GHWSSEYWRGSNRGGCNKIWC*NGR-----LCFWSPGASSEAGRRKLPFTS 398 GH++ W S RGGC +C + + +C + P A + G+ P+TS Sbjct: 133 GHYTQIVWYKSYRGGCAAAYCPSSKYRYFYVCQYCP-AGNMIGKTATPYTS 182
>ENGD_SHIFL (P0ABU4) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 30.0 bits (66), Expect = 5.6 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Frame = +1 Query: 253 KCVVIGLQSTGEARTEEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEK 432 KC ++GL + G++ A+TK G+E +F +E N + P PD ++ Sbjct: 3 KCGIVGLPNVGKSTLFNALTKAGIEAANFP-------FCTIEPNTGVVPMPD---PRLDQ 52 Query: 433 VTEIQRKRHSAPD----VSFKGRVRKVAK 507 + EI + + + P V G V+ +K Sbjct: 53 LAEIVKPQRTLPTTMEFVDIAGLVKGASK 81
>ENGD_ECOLI (P0ABU2) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 30.0 bits (66), Expect = 5.6 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Frame = +1 Query: 253 KCVVIGLQSTGEARTEEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEK 432 KC ++GL + G++ A+TK G+E +F +E N + P PD ++ Sbjct: 3 KCGIVGLPNVGKSTLFNALTKAGIEAANFP-------FCTIEPNTGVVPMPD---PRLDQ 52 Query: 433 VTEIQRKRHSAPD----VSFKGRVRKVAK 507 + EI + + + P V G V+ +K Sbjct: 53 LAEIVKPQRTLPTTMEFVDIAGLVKGASK 81
>ENGD_ECO57 (P0ABU3) GTP-dependent nucleic acid-binding protein engD| Length = 362 Score = 30.0 bits (66), Expect = 5.6 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%) Frame = +1 Query: 253 KCVVIGLQSTGEARTEEAVTKYGVEMEDFVSGPRELLLKLVEENYPLPPKPDSFQQGEEK 432 KC ++GL + G++ A+TK G+E +F +E N + P PD ++ Sbjct: 3 KCGIVGLPNVGKSTLFNALTKAGIEAANFP-------FCTIEPNTGVVPMPD---PRLDQ 52 Query: 433 VTEIQRKRHSAPD----VSFKGRVRKVAK 507 + EI + + + P V G V+ +K Sbjct: 53 LAEIVKPQRTLPTTMEFVDIAGLVKGASK 81
>RL21_MOUSE (O09167) 60S ribosomal protein L21| Length = 159 Score = 29.6 bits (65), Expect = 7.3 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = +1 Query: 172 QRFFRHMCMSAKVPAVVKLAKEALAENKCVVIGLQSTGEARTEEAVTKYGVEMEDFV-SG 348 Q+ H C K V + + A+ +++ Q G+ + + V +E S Sbjct: 48 QKGMPHKCYHGKTGRVYNVTQHAVG----IIVNKQVKGKILAK----RINVRIEHIKHSK 99 Query: 349 PRELLLKLVEENYPLPPKPDSFQQGEEKVTEIQRKRHSAP 468 R+ LK V+EN ++ +EK T +Q KRH+AP Sbjct: 100 SRDSFLKRVKEN------DQKKKEAKEKGTWVQLKRHAAP 133
>YO11_MOUSE (P11260) Hypothetical protein ORF-1137| Length = 379 Score = 29.3 bits (64), Expect = 9.6 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +1 Query: 325 EMEDF-VSGPRELLLKLVEENYPLPPK--PDSFQQGEEKVTEIQRKRHSA 465 E EDF + GP + K++EEN+P K P Q+ + +KR+S+ Sbjct: 209 ENEDFQLKGPANIFNKIIEENFPNIKKEMPMIIQEAYRTPNRLDQKRNSS 258
>PRB1_TOBAC (P11670) Basic form of pathogenesis-related protein 1 precursor| (PRP 1) Length = 177 Score = 29.3 bits (64), Expect = 9.6 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NG 332 +CGH++ WR S R GC ++ NG Sbjct: 114 VCGHYTQVVWRNSVRLGCARVRSNNG 139
>PRMS_MAIZE (Q00008) Pathogenesis-related protein PRMS precursor| Length = 167 Score = 29.3 bits (64), Expect = 9.6 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%) Frame = +3 Query: 255 MCGHWSSEYWRGSNRGGCNKIWC*NGR----LCFWSP 353 +CGH++ WR + GC ++ C + R +C + P Sbjct: 121 VCGHYTQVVWRATTSIGCARVVCRDNRGVFIICNYEP 157 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,717,488 Number of Sequences: 219361 Number of extensions: 1221435 Number of successful extensions: 3703 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3703 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
