| Clone Name | baal39n18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, complete sequence Length = 1732 Score = 325 bits (164), Expect = 8e-86 Identities = 377/448 (84%) Strand = Plus / Plus Query: 75 agtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacca 134 |||||||||||||| | ||||||||| ||||| | || || || || ||||| ||||||| Sbjct: 374 agtgggaggacaggatggcccgaggcttattccgctacgatgtcactgcctgtgagacca 433 Query: 135 aggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctcaaga 194 |||| || |||||| | ||||||||||||||||| || || ||||| |||||||| |||| Sbjct: 434 aggtcatccctggcaaccttgggtttgttgcacaactcaatgaagggcgccaccttaaga 493 Query: 195 agcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaagttca 254 ||||||| || ||||| ||||| |||||||||||||||||||| || |||||||||||| Sbjct: 494 agcgccctactgagtttcgtgtggaccgtgtgctccagccatttgaccctgccaagttca 553 Query: 255 acttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtggcgaca 314 | |||||||| ||||||||||| |||||||| || | ||||||||||||| ||| || Sbjct: 554 atttcaccaaagttggccaggaagaggttcttttccaatttgagaatggtgatggtgatg 613 Query: 315 gcagctatttccttgaaaatgccccaagcattgagggtgaccgtgctcccagcgttgttg 374 |||||||||||| | | || |||| ||||| | ||| |||||||| | ||||||| Sbjct: 614 acagctatttcctgaatgacgctccaatcattgctgttgatcgtgctccaaatgttgttg 673 Query: 375 caatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtccttgacc 434 | |||||||||||||| ||||| || || ||||||||||||||||| ||||| || |||| Sbjct: 674 ctatcaatgtgagcccaattgaatatggacatgtgcttctcattcctcgtgttctggacc 733 Query: 435 gcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagctgagg 494 ||||||||||| | |||||||| || || ||| |||||||||| || ||||||||||||| Sbjct: 734 gcctgcctcagaagattgatccagagagtttcttgcttgcactgcaaatggcagctgagg 793 Query: 495 ctgcaagcccatactttaggcttggtta 522 | || ||||||||||| ||||||||||| Sbjct: 794 cagctagcccatacttcaggcttggtta 821
>gb|AY105327.1| Zea mays PCO147247 mRNA sequence Length = 1954 Score = 254 bits (128), Expect = 3e-64 Identities = 368/448 (82%) Strand = Plus / Plus Query: 75 agtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacca 134 |||||||||||||| | | |||||| ||||| | || || || || ||||| ||||||| Sbjct: 632 agtgggaggacaggatgactcgaggcttattccgctacgatgtcactgcctgtgagacca 691 Query: 135 aggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctcaaga 194 |||| ||||||||| | ||||||||||||||||| || || ||||| ||||| || |||| Sbjct: 692 aggtcattcctggcaaccttgggtttgttgcacaactcaatgaagggcgccatcttaaga 751 Query: 195 agcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaagttca 254 ||||||| || ||||| ||||| ||||||||||||||||| || || ||||||| |||| Sbjct: 752 agcgccctactgagtttcgtgtggaccgtgtgctccagccgtttgaccctgccaaattca 811 Query: 255 acttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtggcgaca 314 | ||||| || ||||||||||| ||||||||||| | ||||||||| ||||||| || Sbjct: 812 atttcacaaaagttggccaggaagaggttctcttccaatttgagaatagtggtggtgatg 871 Query: 315 gcagctatttccttgaaaatgccccaagcattgagggtgaccgtgctcccagcgttgttg 374 |||||||||||| | || || |||| ||||| | ||| || ||||| | ||| ||| Sbjct: 872 acagctatttcctgaacaacgctccaatcattgctgttgatcgggctccaaatgttattg 931 Query: 375 caatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtccttgacc 434 | |||||||| ||||| ||||| || || ||||||||||||||||| ||||| || |||| Sbjct: 932 ctatcaatgtaagcccaattgaatatggacatgtgcttctcattcctcgtgttctggacc 991 Query: 435 gcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggcagctgagg 494 ||||||||||| |||||||| || |||||| |||||||||| || |||||||| |||| Sbjct: 992 gcctgcctcagaggattgatccagagagcttcttgcttgcactgcaaatggcagccgagg 1051 Query: 495 ctgcaagcccatactttaggcttggtta 522 | ||||||||||| ||||||||||| Sbjct: 1052 gaggtagcccatacttcaggcttggtta 1079
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 198 bits (100), Expect = 1e-47 Identities = 202/236 (85%) Strand = Plus / Minus Query: 74 cagtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacc 133 |||||||| |||||| | |||||||| | ||| ||||||| || || ||||| |||||| Sbjct: 4534249 cagtgggaagacaggatggcccgaggtttgttccgatatgatgtcactgcctgtgagacc 4534190 Query: 134 aaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctcaag 193 ||||| || || ||| | ||||||||||||||||| || || ||||| |||||||||||| Sbjct: 4534189 aaggttatcccaggcaaccttgggtttgttgcacaactgaatgaaggacgccacctcaag 4534130 Query: 194 aagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaagttc 253 |||||||| || || ||||| || ||||||||||| || ||||| ||| ||||||||||| Sbjct: 4534129 aagcgccctactgaattccgcgtggaccgtgtgcttcaaccatttgatgctgccaagttc 4534070 Query: 254 aacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtgg 309 ||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| Sbjct: 4534069 aacttcaccaaagttggccaggaggaggtgctcttccaatttgagaatggtggtgg 4534014 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 386 agccctattgagtacggtcatgtgcttctcattccacgtgtccttgaccgcctgcctcag 445 ||||| ||||| || || ||||| ||||||||||| ||||| || ||||||||||||||| Sbjct: 4533852 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 4533793 Query: 446 caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 505 ||||| | || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct: 4533792 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 4533733 Query: 506 tactttaggcttgg 519 ||||| |||||||| Sbjct: 4533732 tacttcaggcttgg 4533719
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 198 bits (100), Expect = 1e-47 Identities = 202/236 (85%) Strand = Plus / Minus Query: 74 cagtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacc 133 |||||||| |||||| | |||||||| | ||| ||||||| || || ||||| |||||| Sbjct: 4534230 cagtgggaagacaggatggcccgaggtttgttccgatatgatgtcactgcctgtgagacc 4534171 Query: 134 aaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctcaag 193 ||||| || || ||| | ||||||||||||||||| || || ||||| |||||||||||| Sbjct: 4534170 aaggttatcccaggcaaccttgggtttgttgcacaactgaatgaaggacgccacctcaag 4534111 Query: 194 aagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaagttc 253 |||||||| || || ||||| || ||||||||||| || ||||| ||| ||||||||||| Sbjct: 4534110 aagcgccctactgaattccgcgtggaccgtgtgcttcaaccatttgatgctgccaagttc 4534051 Query: 254 aacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtgg 309 ||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| Sbjct: 4534050 aacttcaccaaagttggccaggaggaggtgctcttccaatttgagaatggtggtgg 4533995 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 386 agccctattgagtacggtcatgtgcttctcattccacgtgtccttgaccgcctgcctcag 445 ||||| ||||| || || ||||| ||||||||||| ||||| || ||||||||||||||| Sbjct: 4533833 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 4533774 Query: 446 caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 505 ||||| | || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct: 4533773 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 4533714 Query: 506 tactttaggcttgg 519 ||||| |||||||| Sbjct: 4533713 tacttcaggcttgg 4533700
>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 129155 Score = 198 bits (100), Expect = 1e-47 Identities = 202/236 (85%) Strand = Plus / Plus Query: 74 cagtgggaggacagggtagcccgaggcctattcagatatgacgtaacagcctgcgagacc 133 |||||||| |||||| | |||||||| | ||| ||||||| || || ||||| |||||| Sbjct: 70529 cagtgggaagacaggatggcccgaggtttgttccgatatgatgtcactgcctgtgagacc 70588 Query: 134 aaggtgattcctggcgagcttgggtttgttgcacagcttaacgaaggccgccacctcaag 193 ||||| || || ||| | ||||||||||||||||| || || ||||| |||||||||||| Sbjct: 70589 aaggttatcccaggcaaccttgggtttgttgcacaactgaatgaaggacgccacctcaag 70648 Query: 194 aagcgcccaaccgagttccgtgttgaccgtgtgctccagccattcgattctgccaagttc 253 |||||||| || || ||||| || ||||||||||| || ||||| ||| ||||||||||| Sbjct: 70649 aagcgccctactgaattccgcgtggaccgtgtgcttcaaccatttgatgctgccaagttc 70708 Query: 254 aacttcaccaaggttggccaggaggaggttctctttcgctttgagaatggtggtgg 309 ||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||| Sbjct: 70709 aacttcaccaaagttggccaggaggaggtgctcttccaatttgagaatggtggtgg 70764 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Plus Query: 386 agccctattgagtacggtcatgtgcttctcattccacgtgtccttgaccgcctgcctcag 445 ||||| ||||| || || ||||| ||||||||||| ||||| || ||||||||||||||| Sbjct: 70926 agcccaattgaatatggccatgttcttctcattccccgtgtactggaccgcctgcctcag 70985 Query: 446 caaattgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgcaagccca 505 ||||| | || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct: 70986 aggattgaccaggagagcttcttgcttgcactgcacatggctgctgaagccgcaagccca 71045 Query: 506 tactttaggcttgg 519 ||||| |||||||| Sbjct: 71046 tacttcaggcttgg 71059
>dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M14, full insert sequence Length = 2088 Score = 186 bits (94), Expect = 5e-44 Identities = 175/202 (86%) Strand = Plus / Plus Query: 108 gatatgacgtaacagcctgcgagaccaaggtgattcctggcgagcttgggtttgttgcac 167 ||||||| || || ||||| ||||||||||| || || ||| | |||||||||||||||| Sbjct: 704 gatatgatgtcactgcctgtgagaccaaggttatcccaggcaaccttgggtttgttgcac 763 Query: 168 agcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgaccgtgtgc 227 | || || ||||| |||||||||||||||||||| || || ||||| || |||||||||| Sbjct: 764 aactgaatgaaggacgccacctcaagaagcgccctactgaattccgcgtggaccgtgtgc 823 Query: 228 tccagccattcgattctgccaagttcaacttcaccaaggttggccaggaggaggttctct 287 | || ||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||| Sbjct: 824 ttcaaccatttgatgctgccaagttcaacttcaccaaagttggccaggaggaggtgctct 883 Query: 288 ttcgctttgagaatggtggtgg 309 | | ||||||||||||||||| Sbjct: 884 tccaatttgagaatggtggtgg 905 Score = 127 bits (64), Expect = 4e-26 Identities = 130/152 (85%) Strand = Plus / Plus Query: 368 gttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtc 427 ||||||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||||| Sbjct: 964 gttgttgcaatcaatgtaagcccaattgaatatggccatgttcttctcattccccgtgta 1023 Query: 428 cttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggca 487 || ||||||||||||||| ||||| | || |||||| |||||||||| |||||||| Sbjct: 1024 ctggaccgcctgcctcagaggattgaccaggagagcttcttgcttgcactgcacatggct 1083 Query: 488 gctgaggctgcaagcccatactttaggcttgg 519 ||||| || |||||||||||||| |||||||| Sbjct: 1084 gctgaagccgcaagcccatacttcaggcttgg 1115
>dbj|AK059556.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G08, full insert sequence Length = 1295 Score = 147 bits (74), Expect = 4e-32 Identities = 119/134 (88%) Strand = Plus / Plus Query: 176 gaaggccgccacctcaagaagcgcccaaccgagttccgtgttgaccgtgtgctccagcca 235 ||||| |||||||||||||||||||| || || ||||| || ||||||||||| || ||| Sbjct: 14 gaaggacgccacctcaagaagcgccctactgaattccgcgtggaccgtgtgcttcaacca 73 Query: 236 ttcgattctgccaagttcaacttcaccaaggttggccaggaggaggttctctttcgcttt 295 || ||| |||||||||||||||||||||| ||||||||||||||||| ||||| | ||| Sbjct: 74 tttgatgctgccaagttcaacttcaccaaagttggccaggaggaggtgctcttccaattt 133 Query: 296 gagaatggtggtgg 309 |||||||||||||| Sbjct: 134 gagaatggtggtgg 147 Score = 127 bits (64), Expect = 4e-26 Identities = 130/152 (85%) Strand = Plus / Plus Query: 368 gttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgtc 427 ||||||||||||||||| ||||| ||||| || || ||||| ||||||||||| ||||| Sbjct: 206 gttgttgcaatcaatgtaagcccaattgaatatggccatgttcttctcattccccgtgta 265 Query: 428 cttgaccgcctgcctcagcaaattgatcctgaaagcttcctgcttgcactacacatggca 487 || ||||||||||||||| ||||| | || |||||| |||||||||| |||||||| Sbjct: 266 ctggaccgcctgcctcagaggattgaccaggagagcttcttgcttgcactgcacatggct 325 Query: 488 gctgaggctgcaagcccatactttaggcttgg 519 ||||| || |||||||||||||| |||||||| Sbjct: 326 gctgaagccgcaagcccatacttcaggcttgg 357
>gb|AY570979.1| Xerophyta humilis clone HC437 unknown mRNA Length = 1266 Score = 63.9 bits (32), Expect = 5e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 247 caagttcaacttcaccaaggttggccaggaggaggttctctttcgctt 294 ||||||||| ||||||||||| || ||||||||||||||||| ||||| Sbjct: 121 caagttcaatttcaccaaggtcgggcaggaggaggttctcttccgctt 168 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 368 gttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattccacgtgt 426 |||||||||||||| |||||||| || ||||| || ||||| || || ||||| ||||| Sbjct: 239 gttgttgcaatcaacgtgagcccaatcgagtatggccatgtcctgcttattccccgtgt 297
>emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE Length = 132030 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 449 attgatcctgaaagcttcctgcttgcactacacatggcagctgaggctgc 498 ||||||| ||| |||||| |||||||||| |||||||||||||| ||||| Sbjct: 102197 attgatcatgagagcttcttgcttgcacttcacatggcagctgaagctgc 102246 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 162 ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttc 211 |||| ||||||||||| ||||| |||||||||||| | ||||| |||||| Sbjct: 101810 ttgctcagcttaacgagggccgacacctcaagaagagaccaactgagttc 101859
>ref|NM_124894.4| Arabidopsis thaliana unknown protein AT5G55120 mRNA, complete cds Length = 1874 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 923 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 982 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 983 ctcgtgttcttga 995 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 162 ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 220 |||| ||||| || ||||| || || ||||||||| | ||||||||||||||||||||| Sbjct: 719 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 777
>gb|AY091285.1| Arabidopsis thaliana unknown protein (At5g55120) mRNA, complete cds Length = 1327 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 503 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 562 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 563 ctcgtgttcttga 575 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 162 ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 220 |||| ||||| || ||||| || || ||||||||| | ||||||||||||||||||||| Sbjct: 299 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 357
>gb|AY063788.1| Arabidopsis thaliana unknown protein (At5g55120) mRNA, complete cds Length = 1788 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 819 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 878 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 879 ctcgtgttcttga 891 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 162 ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 220 |||| ||||| || ||||| || || ||||||||| | ||||||||||||||||||||| Sbjct: 615 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 673
>emb|BX831350.1|CNS0A1O4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS80ZC01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1806 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 857 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 916 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 917 ctcgtgttcttga 929 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 188 ctcaagaagcgcccaaccgagttccgtgttgac 220 ||||||||| | ||||||||||||||||||||| Sbjct: 680 ctcaagaagagaccaaccgagttccgtgttgac 712
>emb|BX829969.1|CNS0A043 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB4ZG03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1694 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 808 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 867 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 868 ctcgtgttcttga 880 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 188 ctcaagaagcgcccaaccgagttccgtgttgac 220 ||||||||| | ||||||||||||||||||||| Sbjct: 630 ctcaagaagagaccaaccgagttccgtgttgac 662
>emb|BX831865.1|CNS09ZT1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH35ZF07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1838 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 923 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 982 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 983 ctcgtgttcttga 995 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 188 ctcaagaagcgcccaaccgagttccgtgttgac 220 ||||||||| | ||||||||||||||||||||| Sbjct: 745 ctcaagaagagaccaaccgagttccgtgttgac 777
>emb|BX831807.1|CNS09ZUD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZF08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1692 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 783 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 842 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 843 ctcgtgttcttga 855 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Plus Query: 188 ctcaagaagcgcccaaccgagttccgtgttgac 220 ||||||||| | ||||||||||||||||||||| Sbjct: 605 ctcaagaagagaccaaccgagttccgtgttgac 637
>emb|BX830641.1|CNS09ZZY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB9ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1684 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Plus Query: 360 ctcccagcgttgttgcaatcaatgtgagccctattgagtacggtcatgtgcttctcattc 419 |||| ||||| ||||||||||||||||| || |||||||| || |||||| | || |||| Sbjct: 771 ctcctagcgtcgttgcaatcaatgtgagtccgattgagtatgggcatgtgttgctgattc 830 Query: 420 cacgtgtccttga 432 | ||||| ||||| Sbjct: 831 ctcgtgttcttga 843 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 190 caagaagcgcccaaccgagttccgtgttgac 220 ||||||| | ||||||||||||||||||||| Sbjct: 595 caagaagagaccaaccgagttccgtgttgac 625
>dbj|AK111215.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-B04, full insert sequence Length = 2890 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 158 tttgttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgtt 217 ||||| |||||||| ||||| |||||| || |||||||||||| || ||||||||||| Sbjct: 180 tttgtggcacagctgaacgagggccgctacagcaagaagcgccccacagagttccgtgtg 239 Query: 218 gaccgtgtgctccagccattcgattctgccaagttcaacttcaccaagg 266 |||| ||| | ||| | ||||| | |||||||||||||||||||| Sbjct: 240 gaccaggtggtgcaggccttcgaccccaacaagttcaacttcaccaagg 288
>dbj|AB010071.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCO15 Length = 82918 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 162 ttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgttgac 220 |||| ||||| || ||||| || || ||||||||| | ||||||||||||||||||||| Sbjct: 29107 ttgcgcagctgaatgaaggtcggcatctcaagaagagaccaaccgagttccgtgttgac 29165
>gb|AY489190.1| Capsicum annuum putative At4g26850-like protein mRNA, complete sequence Length = 589 Score = 48.1 bits (24), Expect = 0.029 Identities = 39/44 (88%) Strand = Plus / Plus Query: 247 caagttcaacttcaccaaggttggccaggaggaggttctctttc 290 ||||||||||||||| |||||||| ||||| ||| | ||||||| Sbjct: 524 caagttcaacttcactaaggttggacaggaagagttgctctttc 567 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Plus Query: 122 gcctgcgagaccaaggtgattcctgg 147 |||||||| ||||||||||||||||| Sbjct: 399 gcctgcgaaaccaaggtgattcctgg 424
>gb|BT013858.1| Lycopersicon esculentum clone 132824R, mRNA sequence Length = 2013 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Plus Query: 369 ttgttgcaatcaatgtgagccctattgagta 399 ||||||| |||||||||||||| |||||||| Sbjct: 947 ttgttgctatcaatgtgagcccaattgagta 977 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 182 cgccacctcaagaagcgcccaaccgagtt 210 |||||||| |||||||||||||| ||||| Sbjct: 763 cgccacctaaagaagcgcccaacagagtt 791
>gb|AE009937.1|AE009937 Pyrobaculum aerophilum strain IM2 section 192 of 201 of the complete genome Length = 11207 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 499 aagcccatactttaggcttggtt 521 ||||||||||||||||||||||| Sbjct: 2161 aagcccatactttaggcttggtt 2183
>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence Length = 198646 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 tggccaggaggaggttctctt 288 ||||||||||||||||||||| Sbjct: 158745 tggccaggaggaggttctctt 158765
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 ggtgaccgtgctcccagcgtt 370 ||||||||||||||||||||| Sbjct: 2549882 ggtgaccgtgctcccagcgtt 2549862
>gb|AC154126.2| Mus musculus BAC clone RP23-471O11 from chromosome 7, complete sequence Length = 198860 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 tggccaggaggaggttctctt 288 ||||||||||||||||||||| Sbjct: 186600 tggccaggaggaggttctctt 186580
>ref|NM_118819.2| Arabidopsis thaliana VTC2 (VITAMIN C DEFECTIVE 2) AT4G26850 (VTC2) mRNA, complete cds Length = 2084 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Plus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 819 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 874
>ref|XM_845849.1| PREDICTED: Canis familiaris similar to BTB (POZ) domain containing 11 isoform 3, transcript variant 2 (LOC481292), mRNA Length = 3430 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 tgttgaccgtgtgctccagc 233 |||||||||||||||||||| Sbjct: 1075 tgttgaccgtgtgctccagc 1056
>gb|U41107.1| Caenorhabditis elegans cosmid F55C12, complete sequence Length = 39086 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 catgtgcttctcattccacg 423 |||||||||||||||||||| Sbjct: 20793 catgtgcttctcattccacg 20812
>gb|AC149580.19| Medicago truncatula clone mth2-123f14, complete sequence Length = 123565 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 actgagttcttcctcaattctctc 64 |||||||| ||||||||||||||| Sbjct: 79670 actgagtttttcctcaattctctc 79693
>emb|AL355315.18| Human DNA sequence from clone RP11-548K23 on chromosome 10 Contains the ANKRD2 gene for ankyrin repeat domain 2 (stretch responsive muscle), six novel genes, the gene for phosphatidylinositol 4-kinase type II (PI4KII) and four CpG islands, complete sequence Length = 157193 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 caccaaggttggccaggagg 278 |||||||||||||||||||| Sbjct: 132404 caccaaggttggccaggagg 132423
>gb|AC115090.8| Homo sapiens chromosome 17, clone CTC-861O14, complete sequence Length = 173716 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gagtacggtcatgtgcttct 414 |||||||||||||||||||| Sbjct: 155346 gagtacggtcatgtgcttct 155365
>gb|AY056134.1| Arabidopsis thaliana unknown protein (At4g26850) mRNA, complete cds Length = 2097 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Plus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 817 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 872
>emb|AL935256.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 5/11 Length = 302050 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 442 tcagcaaattgatcctgaaa 461 |||||||||||||||||||| Sbjct: 197316 tcagcaaattgatcctgaaa 197297
>emb|AL161566.2|ATCHRIV66 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 66 Length = 198372 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 4402 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 4347
>emb|AL161565.2|ATCHRIV65 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 65 Length = 198320 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 197722 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 197667
>emb|AL035440.2|ATF10M23 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M23 (ESSA project) Length = 128574 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 48559 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 48504
>emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 in linkage group 11, complete sequence Length = 133334 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 agcagctatttccttgaaaa 333 |||||||||||||||||||| Sbjct: 42382 agcagctatttccttgaaaa 42401
>emb|AL662836.7| Mouse DNA sequence from clone RP23-313L19 on chromosome 11, complete sequence Length = 120749 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ccaggaggaggttctctttc 290 |||||||||||||||||||| Sbjct: 60215 ccaggaggaggttctctttc 60196
>gb|AF508793.1| Arabidopsis thaliana VTC2 (VTC2) gene, complete cds Length = 1884 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Plus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 599 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 654
>gb|AY093138.1| Arabidopsis thaliana putative protein (At4g26850) mRNA, complete cds Length = 2045 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Plus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 817 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 872
>ref|XM_936572.1| PREDICTED: Homo sapiens suppressor of cytokine signaling 7 (SOCS7), mRNA Length = 1725 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gagtacggtcatgtgcttct 414 |||||||||||||||||||| Sbjct: 1589 gagtacggtcatgtgcttct 1570
>gb|AF085249.1|AF085249 Gallus gallus calcium/calmodulin-dependent kinase type II beta subunit mRNA, complete cds Length = 1703 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 tggccaggaggaggttctct 287 |||||||||||||||||||| Sbjct: 470 tggccaggaggaggttctct 451
>gb|BT006589.1| Arabidopsis thaliana At4g26850 mRNA, complete cds Length = 1329 Score = 40.1 bits (20), Expect = 7.1 Identities = 47/56 (83%) Strand = Plus / Plus Query: 161 gttgcacagcttaacgaaggccgccacctcaagaagcgcccaaccgagttccgtgt 216 ||||| ||||||||||| || || ||| | |||||| | ||||| ||||||||||| Sbjct: 316 gttgctcagcttaacgagggtcgtcacttgaagaagaggccaactgagttccgtgt 371
>gb|AC124789.12| Homo sapiens chromosome 17, clone RP11-923C2, complete sequence Length = 105701 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 gagtacggtcatgtgcttct 414 |||||||||||||||||||| Sbjct: 9527 gagtacggtcatgtgcttct 9546
>ref|NM_204294.1| Gallus gallus calcium/calmodulin-dependent protein kinase (CaM kinase) II beta (CAMK2B), mRNA Length = 1703 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 tggccaggaggaggttctct 287 |||||||||||||||||||| Sbjct: 470 tggccaggaggaggttctct 451
>ref|XM_573834.1| PREDICTED: Rattus norvegicus similar to OTTHUMP00000018508 (LOC498559), mRNA Length = 1111 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 acagcagctatttccttgaa 331 |||||||||||||||||||| Sbjct: 362 acagcagctatttccttgaa 343
>emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in linkage group 7, complete sequence Length = 147943 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gagctccctactgagttctt 51 |||||||||||||||||||| Sbjct: 60496 gagctccctactgagttctt 60515
>ref|NM_014598.1| Homo sapiens suppressor of cytokine signaling 7 (SOCS7), mRNA Length = 2162 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gagtacggtcatgtgcttct 414 |||||||||||||||||||| Sbjct: 2054 gagtacggtcatgtgcttct 2035
>emb|AL772288.12| Mouse DNA sequence from clone RP23-360H6 on chromosome 4, complete sequence Length = 132015 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 ccaggaggaggttctctttc 290 |||||||||||||||||||| Sbjct: 39010 ccaggaggaggttctctttc 38991 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,955,666 Number of Sequences: 3902068 Number of extensions: 4955666 Number of successful extensions: 89418 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89213 Number of HSP's gapped (non-prelim): 200 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)