ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39m14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor protein mRNA, complete cds Length = 866 Score = 868 bits (438), Expect = 0.0 Identities = 495/513 (96%), Gaps = 2/513 (0%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 354 caagctcggcaacgacatcctcgtcgaggactggctcaagacgcacggccccaacgaccg 413 Query: 61 cacgctcgcccaggggctcaagggtgatcctacctaccttgtggtggagtccgacaagac 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 cacgctggcccaggggctcaagggtgatcctacctaccttgtggtggagtccgacaagac 473 Query: 121 cctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaa 180 ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 474 ccttgccacctacgggatcaacgccgtgtgcacgcatcttggatgcgtcgtgccgtggaa 533 Query: 181 cgccgccgagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaa 240 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 534 cgccgccgagaacaagttcctctgcccctgccatggatcccagtacaacaaccagggcaa 593 Query: 241 ggttgtccgtggacctgcacctctgtcgctggccctcgttcacgccgacgtcgacgacgg 300 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 594 ggttgtccgtgggcctgcacctctgtcgctggccctggttcacgccgacgtcgacgacgg 653 Query: 301 caaggtcgtcttcgtgccatgggtggagaccgacttcaggaccggcgagaacccgtggtg 360 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 654 caaggtcgtcttcgtgccgtgggtggagaccgacttcaggaccggcgacaacccgtggtg 713 Query: 361 gaaataagcgacacaagctccggcagcaaagctcactcgtgtgatatgttaagcctcctg 420 |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct: 714 gaaataagcgacgcaagctccggcagcaatgctcactcctgtgatatgttaagcctcctg 773 Query: 421 ccagtcctaagaacgctgct--ataagagtactcctgctataaatgcacctgtttcttgt 478 |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct: 774 ccagtcctaagaacgctgctacataagactactcctgctataaatgcacctgtttcttgt 833 Query: 479 atccagttatatgtatacagtctatgaaagaag 511 |||||||||||||||||||||||||| |||||| Sbjct: 834 atccagttatatgtatacagtctatggaagaag 866
>emb|AJ222783.1|HVJ222783 Hordeum vulgare mRNA for cytochrome b6/f-complex iron-sulfur like-protein, clone RG115 Length = 275 Score = 537 bits (271), Expect = e-149 Identities = 271/271 (100%) Strand = Plus / Plus Query: 78 tcaagggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacggga 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 tcaagggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacggga 64 Query: 138 tcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagt 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 tcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagt 124 Query: 198 tcctctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctg 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 tcctctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctg 184 Query: 258 cacctctgtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgc 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 cacctctgtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgc 244 Query: 318 catgggtggagaccgacttcaggaccggcga 348 ||||||||||||||||||||||||||||||| Sbjct: 245 catgggtggagaccgacttcaggaccggcga 275
>gb|BT016255.1| Zea mays clone Contig88 mRNA sequence Length = 998 Score = 426 bits (215), Expect = e-116 Identities = 326/363 (89%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || |||| |||||||| |||||||| |||||||| || Sbjct: 384 caagctgggcaacgacatcacggtggaggcgtggctcaacacgcacggtcccaacgatcg 443 Query: 61 cacgctcgcccaggggctcaagggtgatcctacctaccttgtggtggagtccgacaagac 120 ||||||||| ||||||||||||||||| || || ||||| ||||||||| |||||||| Sbjct: 444 cacgctcgcgcaggggctcaagggtgaccccacgtacctggtggtggagcaggacaagac 503 Query: 121 cctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaa 180 || ||||||||||||||||||||||| ||||| || || |||||||||||||| ||||| Sbjct: 504 gctggccacctacgggatcaacgccgtgtgcactcacctcggctgcgtcgtgccgtggaa 563 Query: 181 cgccgccgagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaa 240 || |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct: 564 cggcgccgagaacaagttcatctgcccatgccacggatcccagtacaacaaccagggcaa 623 Query: 241 ggttgtccgtggacctgcacctctgtcgctggccctcgttcacgccgacgtcgacgacgg 300 ||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 624 ggtggtccgtggaccggcgcctctgtcgctggccctggttcacgccgacgtcgacgacgg 683 Query: 301 caaggtcgtcttcgtgccatgggtggagaccgacttcaggaccggcgagaacccgtggtg 360 ||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||| Sbjct: 684 caaggtcctcttcgtcccgtgggtggagaccgacttcaggaccggcgaggacccgtggtg 743 Query: 361 gaa 363 ||| Sbjct: 744 gaa 746
>gb|AY104934.1| Zea mays PCO071754 mRNA sequence Length = 1058 Score = 426 bits (215), Expect = e-116 Identities = 326/363 (89%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || ||||| |||||||| |||||||| ||||||||||| Sbjct: 443 caagctgggcaacgacatcacggtggaggagtggctcaacacgcacggtcccaacgaccg 502 Query: 61 cacgctcgcccaggggctcaagggtgatcctacctaccttgtggtggagtccgacaagac 120 ||||||||| ||||||||||||||||| || || ||||| ||||||||| |||||||| Sbjct: 503 cacgctcgcgcaggggctcaagggtgaccccacgtacctggtggtggagcaggacaagac 562 Query: 121 cctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaa 180 || ||||||||||||||||||||||| ||||| || || |||||||||||||| ||||| Sbjct: 563 gctggccacctacgggatcaacgccgtgtgcactcacctcggctgcgtcgtgccgtggaa 622 Query: 181 cgccgccgagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaa 240 || ||| |||||||||||| ||||||| ||||| |||||||||||||||||||||||||| Sbjct: 623 cggcgctgagaacaagttcatctgcccctgccacggatcccagtacaacaaccagggcaa 682 Query: 241 ggttgtccgtggacctgcacctctgtcgctggccctcgttcacgccgacgtcgacgacgg 300 ||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 683 ggtggtccgtggaccggcgcctctgtcgctggccctggttcacgccgacgtcgacgacgg 742 Query: 301 caaggtcgtcttcgtgccatgggtggagaccgacttcaggaccggcgagaacccgtggtg 360 ||||||| ||||||| || |||||||||||||||||||||||||||||| |||| ||||| Sbjct: 743 caaggtcctcttcgtcccgtgggtggagaccgacttcaggaccggcgaggacccatggtg 802 Query: 361 gaa 363 ||| Sbjct: 803 gaa 805
>dbj|AK071634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100K03, full insert sequence Length = 1082 Score = 422 bits (213), Expect = e-115 Identities = 324/361 (89%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||||||||||||| | |||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 365 caagctcggcaacgacgtgctcgccgaggagtggctcaagacacacggccccaacgaccg 424 Query: 61 cacgctcgcccaggggctcaagggtgatcctacctaccttgtggtggagtccgacaagac 120 ||| ||| ||||||||||||||||||| || || ||||| || |||||| |||||||||| Sbjct: 425 caccctcacccaggggctcaagggtgacccgacgtacctcgtcgtggaggccgacaagac 484 Query: 121 cctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaa 180 || ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 485 gctggccacgtacgggatcaacgccgtgtgcacgcaccttgggtgcgtcgtgccgtggaa 544 Query: 181 cgccgccgagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaa 240 ||||||||||||||||||| ||||||| ||||| || || ||||||||||||||||||| Sbjct: 545 cgccgccgagaacaagttcatctgcccctgccacggctcgcagtacaacaaccagggcag 604 Query: 241 ggttgtccgtggacctgcacctctgtcgctggccctcgttcacgccgacgtcgacgacgg 300 ||| |||||||||||||| || ||||||||||| | || |||||||||||||||||||| Sbjct: 605 ggtcgtccgtggacctgctcccctgtcgctggcattggtgcacgccgacgtcgacgacgg 664 Query: 301 caaggtcgtcttcgtgccatgggtggagaccgacttcaggaccggcgagaacccgtggtg 360 |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 665 caaggttctcttcgtgccgtgggtggagaccgacttcaggaccggcgacaacccgtggtg 724 Query: 361 g 361 | Sbjct: 725 g 725
>gb|AF093631.1|AF093631 Oryza sativa Rieske Fe-S precursor protein (RISP) mRNA, complete cds Length = 919 Score = 422 bits (213), Expect = e-115 Identities = 324/361 (89%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||||||||||||| | |||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 353 caagctcggcaacgacgtgctcgccgaggagtggctcaagacacacggccccaacgaccg 412 Query: 61 cacgctcgcccaggggctcaagggtgatcctacctaccttgtggtggagtccgacaagac 120 ||| ||| ||||||||||||||||||| || || ||||| || |||||| |||||||||| Sbjct: 413 caccctcacccaggggctcaagggtgacccgacgtacctcgtcgtggaggccgacaagac 472 Query: 121 cctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaa 180 || ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||| Sbjct: 473 gctggccacgtacgggatcaacgccgtgtgcacgcaccttgggtgcgtcgtgccgtggaa 532 Query: 181 cgccgccgagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaa 240 ||||||||||||||||||| ||||||| ||||| || || ||||||||||||||||||| Sbjct: 533 cgccgccgagaacaagttcatctgcccctgccacggctcgcagtacaacaaccagggcag 592 Query: 241 ggttgtccgtggacctgcacctctgtcgctggccctcgttcacgccgacgtcgacgacgg 300 ||| |||||||||||||| || ||||||||||| | || |||||||||||||||||||| Sbjct: 593 ggtcgtccgtggacctgctcccctgtcgctggcattggtgcacgccgacgtcgacgacgg 652 Query: 301 caaggtcgtcttcgtgccatgggtggagaccgacttcaggaccggcgagaacccgtggtg 360 |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct: 653 caaggttctcttcgtgccgtgggtggagaccgacttcaggaccggcgacaacccgtggtg 712 Query: 361 g 361 | Sbjct: 713 g 713
>gb|AY581830.1| Cynodon dactylon putative Rieske Fe-S precursor protein mRNA, partial cds Length = 511 Score = 315 bits (159), Expect = 8e-83 Identities = 285/327 (87%) Strand = Plus / Plus Query: 37 caagacgcacggccccaacgaccgcacgctcgcccaggggctcaagggtgatcctaccta 96 |||||||||||||||||| |||||||||||| | ||||||||||||||||| || || || Sbjct: 1 caagacgcacggccccaaagaccgcacgctcacgcaggggctcaagggtgaccccacgta 60 Query: 97 ccttgtggtggagtccgacaagaccctcgccacctacgggatcaacgccgtctgcacgca 156 ||| || ||||| |||||||| || ||||||||||| |||||||| |||||||| || Sbjct: 61 cctggtcgtggacaaggacaagacgctggccacctacggcatcaacgcggtctgcaccca 120 Query: 157 tcttggctgcgtcgtgccttggaacgccgccgagaacaagttcctctgcccttgccatgg 216 || || ||||||||||| ||||| || |||||||||||||| | | ||| ||||| || Sbjct: 121 cctgggatgcgtcgtgccgtggaatccccccgagaacaagttcatgtacccatgccacgg 180 Query: 217 atcccagtacaacaaccagggcaaggttgtccgtggacctgcacctctgtcgctggccct 276 ||||||||||||||||||||||||||| ||||||||||| || || |||||||||||| | Sbjct: 181 atcccagtacaacaaccagggcaaggtcgtccgtggaccggcgccactgtcgctggcctt 240 Query: 277 cgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggtggagaccgactt 336 |||||||||||||||||||||||||||| | | ||||| || ||||||||||||||||| Sbjct: 241 ggttcacgccgacgtcgacgacggcaaggcccttttcgtcccgtgggtggagaccgactt 300 Query: 337 caggaccggcgagaacccgtggtggaa 363 ||||||||||||| |||| |||||||| Sbjct: 301 caggaccggcgaggacccctggtggaa 327
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 194 bits (98), Expect = 2e-46 Identities = 158/178 (88%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| || |||||| |||||||||| || ||||| |||||||||| Sbjct: 22132472 agggtgacccgacgtacctcgtcgtggaggccgacaagacgctggccacgtacgggatca 22132531 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttcc 200 ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 22132532 acgccgtgtgcacgcaccttgggtgcgtcgtgccgtggaacgccgccgagaacaagttca 22132591 Query: 201 tctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctgc 258 ||||||| ||||| || || ||||||||||||||||||| ||| |||||||||||||| Sbjct: 22132592 tctgcccctgccacggctcgcagtacaacaaccagggcagggtcgtccgtggacctgc 22132649 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 281 cacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggtggagaccgacttcagg 340 |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 22132874 cacgccgacgtcgacgacggcaaggttctcttcgtgccgtgggtggagaccgacttcagg 22132933 Query: 341 accggcgagaacccgtggtgg 361 |||||||| |||||||||||| Sbjct: 22132934 accggcgacaacccgtggtgg 22132954 Score = 109 bits (55), Expect = 9e-21 Identities = 76/83 (91%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||||||||||||| | |||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 22132304 caagctcggcaacgacgtgctcgccgaggagtggctcaagacacacggccccaacgaccg 22132363 Query: 61 cacgctcgcccaggggctcaagg 83 ||| ||| ||||||||||||||| Sbjct: 22132364 caccctcacccaggggctcaagg 22132386
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0058I18 Length = 151453 Score = 194 bits (98), Expect = 2e-46 Identities = 158/178 (88%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| || |||||| |||||||||| || ||||| |||||||||| Sbjct: 86128 agggtgacccgacgtacctcgtcgtggaggccgacaagacgctggccacgtacgggatca 86187 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttcc 200 ||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 86188 acgccgtgtgcacgcaccttgggtgcgtcgtgccgtggaacgccgccgagaacaagttca 86247 Query: 201 tctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctgc 258 ||||||| ||||| || || ||||||||||||||||||| ||| |||||||||||||| Sbjct: 86248 tctgcccctgccacggctcgcagtacaacaaccagggcagggtcgtccgtggacctgc 86305 Score = 129 bits (65), Expect = 1e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 281 cacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggtggagaccgacttcagg 340 |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct: 86530 cacgccgacgtcgacgacggcaaggttctcttcgtgccgtgggtggagaccgacttcagg 86589 Query: 341 accggcgagaacccgtggtgg 361 |||||||| |||||||||||| Sbjct: 86590 accggcgacaacccgtggtgg 86610 Score = 109 bits (55), Expect = 9e-21 Identities = 76/83 (91%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||||||||||||| | |||| |||||| ||||||||||| ||||||||||||||||| Sbjct: 85960 caagctcggcaacgacgtgctcgccgaggagtggctcaagacacacggccccaacgaccg 86019 Query: 61 cacgctcgcccaggggctcaagg 83 ||| ||| ||||||||||||||| Sbjct: 86020 caccctcacccaggggctcaagg 86042
>gb|DQ122916.1| Chlamydomonas incerta chloroplast cytochrome B6/F complex rieske iron-sulfur protein (PetC) mRNA, partial cds; nuclear gene for chloroplast product Length = 1178 Score = 89.7 bits (45), Expect = 9e-15 Identities = 114/137 (83%) Strand = Plus / Plus Query: 140 aacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttc 199 |||||||| ||||| || || |||||||||||||||||| || ||||||||||||||| Sbjct: 307 aacgccgtgtgcactcacctgggctgcgtcgtgccttgggtggcggccgagaacaagttc 366 Query: 200 ctctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctgca 259 ||||||||||| || || ||||||||| |||||||||| |||||||| || || Sbjct: 367 aagtgcccttgccacggctctcagtacaacgctgagggcaaggtggtccgtggccccgct 426 Query: 260 cctctgtcgctggccct 276 || |||||||||||||| Sbjct: 427 cccctgtcgctggccct 443
>dbj|D32003.1| Chlamydomonas reinhardtii mRNA for chloroplast Rieske Fe-S precursor protein, complete cds Length = 1436 Score = 89.7 bits (45), Expect = 9e-15 Identities = 114/137 (83%) Strand = Plus / Plus Query: 140 aacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttc 199 |||||||| ||||| || || |||||||||||||||||| || ||||||||||||||| Sbjct: 440 aacgccgtgtgcactcacctgggctgcgtcgtgccttgggtggcggccgagaacaagttc 499 Query: 200 ctctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctgca 259 ||||||||||| || || ||||||||| |||||||||| |||||||| || || Sbjct: 500 aagtgcccttgccacggctctcagtacaacgctgagggcaaggtggtccgtggccccgct 559 Query: 260 cctctgtcgctggccct 276 || |||||||||||||| Sbjct: 560 cccctgtcgctggccct 576
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 87.7 bits (44), Expect = 3e-14 Identities = 88/103 (85%), Gaps = 6/103 (5%) Strand = Plus / Minus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgg-- 322 ||||||||| | |||||||||||||||||||||| |||||| |||||||||| ||| Sbjct: 53148 gtcgctggcattggttcacgccgacgtcgacgacgacaaggttctcttcgtgccgtgggt 53089 Query: 323 ----gtggagaccgacttcaggaccggcgagaacccgtggtgg 361 |||||||||||||||||||| ||||| |||||||||||| Sbjct: 53088 gtgagtggagaccgacttcaggactggcgacaacccgtggtgg 53046
>gb|DQ384526.1| Panax ginseng clone PG6L-3 photosynthetic electron transfer-like protein mRNA, complete cds Length = 770 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Plus Query: 128 acctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgcc 187 ||||| || ||||| || || |||||||||||||| || || ||||| ||||| || Sbjct: 389 acctatggtatcaatgcagtgtgcacgcatcttggttgtgttgtgccatggaataaagca 448 Query: 188 gagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaaggttgtc 247 |||||||||||| | ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 449 gagaacaagttcatgtgcccatgccatggatctcagtacaacaaccaaggcaaggttgtt 508 Query: 248 cgtggacctgcacctctgtc 267 | || ||||| |||||||| Sbjct: 509 agaggccctgctcctctgtc 528
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 3e-14 Identities = 88/103 (85%), Gaps = 6/103 (5%) Strand = Plus / Minus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgg-- 322 ||||||||| | |||||||||||||||||||||| |||||| |||||||||| ||| Sbjct: 18961224 gtcgctggcattggttcacgccgacgtcgacgacgacaaggttctcttcgtgccgtgggt 18961165 Query: 323 ----gtggagaccgacttcaggaccggcgagaacccgtggtgg 361 |||||||||||||||||||| ||||| |||||||||||| Sbjct: 18961164 gtgagtggagaccgacttcaggactggcgacaacccgtggtgg 18961122
>gb|DQ427777.1| Sorghum propinquum locus HHU30 genomic sequence Length = 742 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 442 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 501 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 502 cacgctggcgcaggggctcaagg 524 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 646 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 705 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 706 acgccgtgtgcactcacctcggctgcgtcgtgcc 739
>gb|DQ427776.1| Sorghum bicolor voucher PI585454 locus HHU30 genomic sequence Length = 728 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 434 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 493 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 494 cacgctggcgcaggggctcaagg 516 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 632 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 691 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 692 acgccgtgtgcactcacctcggctgcgtcgtgcc 725
>gb|DQ427775.1| Sorghum bicolor voucher PI267539 locus HHU30 genomic sequence Length = 731 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 635 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 694 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 695 acgccgtgtgcactcacctcggctgcgtcgtgcc 728
>gb|DQ427774.1| Sorghum bicolor voucher PI267408 locus HHU30 genomic sequence Length = 731 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 635 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 694 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 695 acgccgtgtgcactcacctcggctgcgtcgtgcc 728
>gb|DQ427773.1| Sorghum bicolor voucher PI221607 locus HHU30 genomic sequence Length = 725 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 629 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 688 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 689 acgccgtgtgcactcacctcggctgcgtcgtgcc 722
>gb|DQ427772.1| Sorghum bicolor voucher PI152702 locus HHU30 genomic sequence Length = 731 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 635 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 694 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 695 acgccgtgtgcactcacctcggctgcgtcgtgcc 728
>gb|DQ427771.1| Sorghum bicolor voucher NSL92371 locus HHU30 genomic sequence Length = 731 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 635 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 694 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 695 acgccgtgtgcactcacctcggctgcgtcgtgcc 728
>gb|DQ427770.1| Sorghum bicolor voucher NSL87902 locus HHU30 genomic sequence Length = 728 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 434 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 493 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 494 cacgctggcgcaggggctcaagg 516 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 632 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 691 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 692 acgccgtgtgcactcacctcggctgcgtcgtgcc 725
>gb|DQ427769.1| Sorghum bicolor voucher NSL87666 locus HHU30 genomic sequence Length = 733 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 439 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 498 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 499 cacgctggcgcaggggctcaagg 521 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 637 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 696 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 697 acgccgtgtgcactcacctcggctgcgtcgtgcc 730
>gb|DQ427768.1| Sorghum bicolor voucher NSL77217 locus HHU30 genomic sequence Length = 731 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 635 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 694 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 695 acgccgtgtgcactcacctcggctgcgtcgtgcc 728
>gb|DQ427767.1| Sorghum bicolor voucher NSL77034 locus HHU30 genomic sequence Length = 723 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 435 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 494 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 495 cacgctggcgcaggggctcaagg 517 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 627 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 686 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 687 acgccgtgtgcactcacctcggctgcgtcgtgcc 720
>gb|DQ427766.1| Sorghum bicolor voucher NSL56174 locus HHU30 genomic sequence Length = 723 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 435 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 494 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 495 cacgctggcgcaggggctcaagg 517 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 627 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 686 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 687 acgccgtgtgcactcacctcggctgcgtcgtgcc 720
>gb|DQ427765.1| Sorghum bicolor voucher NSL56003 locus HHU30 genomic sequence Length = 723 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 435 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 494 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 495 cacgctggcgcaggggctcaagg 517 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 627 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 686 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 687 acgccgtgtgcactcacctcggctgcgtcgtgcc 720
>gb|DQ427764.1| Sorghum bicolor voucher NSL55243 locus HHU30 genomic sequence Length = 723 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 435 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 494 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 495 cacgctggcgcaggggctcaagg 517 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 627 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 686 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 687 acgccgtgtgcactcacctcggctgcgtcgtgcc 720
>gb|DQ427763.1| Sorghum bicolor voucher NSL51365 locus HHU30 genomic sequence Length = 723 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 435 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 494 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 495 cacgctggcgcaggggctcaagg 517 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 627 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 686 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 687 acgccgtgtgcactcacctcggctgcgtcgtgcc 720
>gb|DQ427762.1| Sorghum bicolor voucher NSL51030 locus HHU30 genomic sequence Length = 728 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 434 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 493 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 494 cacgctggcgcaggggctcaagg 516 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 632 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 691 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 692 acgccgtgtgcactcacctcggctgcgtcgtgcc 725
>gb|DQ427761.1| Sorghum bicolor voucher NSL50875 locus HHU30 genomic sequence Length = 725 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 629 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 688 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 689 acgccgtgtgcactcacctcggctgcgtcgtgcc 722
>gb|DQ427760.1| Sorghum bicolor voucher BTx623 locus HHU30 genomic sequence Length = 731 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 1 caagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccg 60 |||||| |||||||||||| || || || ||||||||||||||||| ||||||||||| Sbjct: 437 caagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcccaacgaccg 496 Query: 61 cacgctcgcccaggggctcaagg 83 |||||| || ||||||||||||| Sbjct: 497 cacgctggcgcaggggctcaagg 519 Score = 83.8 bits (42), Expect = 5e-13 Identities = 81/94 (86%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 ||||||| || || ||||| ||||||||| |||||||| || |||||||||||||||| Sbjct: 635 agggtgacccgacgtacctggtggtggagcaggacaagacgctggccacctacgggatca 694 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgcc 174 ||||||| ||||| || || |||||||||||||| Sbjct: 695 acgccgtgtgcactcacctcggctgcgtcgtgcc 728
>ref|NM_193963.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 705 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggt 324 ||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 96 gtcgctggcattggttcacgccgacgtcgacgacggcaaggttctcttcgtgccgtgggt 155 Query: 325 ggaga 329 ||||| Sbjct: 156 ggaga 160
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggt 324 ||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 14242598 gtcgctggcattggttcacgccgacgtcgacgacggcaaggttctcttcgtgccgtgggt 14242657 Query: 325 ggaga 329 ||||| Sbjct: 14242658 ggaga 14242662
>gb|AY826845.1| Pavlova lutheri clone PLCB61 chloroplast cytochrome b6 mRNA, partial cds; nuclear gene for chloroplast product Length = 640 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Plus Query: 138 tcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagt 197 ||||||| ||||||||||| ||||||||||||||||| ||||||||||| || | |||| Sbjct: 222 tcaacgcggtctgcacgcaccttggctgcgtcgtgccgtggaacgccgcgcagcagaagt 281 Query: 198 tcctctgcccttgccatggatcccagtac 226 || ||||||| ||||| || || |||||| Sbjct: 282 tcatctgcccctgccacggctcgcagtac 310
>dbj|AP002870.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0458A05 Length = 120593 Score = 81.8 bits (41), Expect = 2e-12 Identities = 59/65 (90%) Strand = Plus / Plus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggt 324 ||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 38288 gtcgctggcattggttcacgccgacgtcgacgacggcaaggttctcttcgtgccgtgggt 38347 Query: 325 ggaga 329 ||||| Sbjct: 38348 ggaga 38352
>gb|AY300039.1| Solanum tuberosum putative Rieske Fe-S protein precursor (FeS) mRNA, complete cds; nuclear gene for chloroplast product Length = 693 Score = 79.8 bits (40), Expect = 8e-12 Identities = 124/152 (81%) Strand = Plus / Plus Query: 80 aagggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatc 139 ||||| |||||||| |||||||| |||||| ||| || ||||| ||||| || ||| Sbjct: 406 aagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatc 465 Query: 140 aacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttc 199 ||||| || ||||| || ||||| || |||||||| ||||| | || |||||||||||| Sbjct: 466 aacgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttc 525 Query: 200 ctctgcccttgccatggatcccagtacaacaa 231 | ||||||||||||||||| || |||||||| Sbjct: 526 atttgcccttgccatggatctcaatacaacaa 557
>gb|AC122543.1| Genomic sequence for Brassica oleracea, clone B21H13, complete sequence Length = 101563 Score = 79.8 bits (40), Expect = 8e-12 Identities = 121/148 (81%) Strand = Plus / Plus Query: 81 agggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatca 140 |||| ||||| || ||||| || |||||| ||||||||| || || || ||||| || | Sbjct: 101064 agggagatccaacttacctagttgtggagaacgacaagacactagcgacatacggtataa 101123 Query: 141 acgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttcc 200 |||| || ||||| |||||||| || || ||||| |||||| || ||||||||||||| Sbjct: 101124 acgcagtatgcacacatcttggatgtgttgtgccatggaacaaagctgagaacaagttcc 101183 Query: 201 tctgcccttgccatggatcccagtacaa 228 | || ||||||||||||||||| ||||| Sbjct: 101184 tatgtccttgccatggatcccaatacaa 101211
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 79.8 bits (40), Expect = 8e-12 Identities = 87/103 (84%), Gaps = 6/103 (5%) Strand = Plus / Plus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgg-- 322 ||||||||| | |||||||||||||||||||||| |||||| |||||||||| ||| Sbjct: 8732162 gtcgctggcattggttcacgccgacgtcgacgacgacaaggttctcttcgtgccgtgggt 8732221 Query: 323 ----gtggagaccgacttcaggaccggcgagaacccgtggtgg 361 |||||||| ||||||||||| ||||| |||||||||||| Sbjct: 8732222 gtgagtggagactgacttcaggactggcgacaacccgtggtgg 8732264
>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463G12 Length = 145403 Score = 79.8 bits (40), Expect = 8e-12 Identities = 87/103 (84%), Gaps = 6/103 (5%) Strand = Plus / Plus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgg-- 322 ||||||||| | |||||||||||||||||||||| |||||| |||||||||| ||| Sbjct: 139209 gtcgctggcattggttcacgccgacgtcgacgacgacaaggttctcttcgtgccgtgggt 139268 Query: 323 ----gtggagaccgacttcaggaccggcgagaacccgtggtgg 361 |||||||| ||||||||||| ||||| |||||||||||| Sbjct: 139269 gtgagtggagactgacttcaggactggcgacaacccgtggtgg 139311
>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052K15 Length = 156250 Score = 79.8 bits (40), Expect = 8e-12 Identities = 87/103 (84%), Gaps = 6/103 (5%) Strand = Plus / Plus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgg-- 322 ||||||||| | |||||||||||||||||||||| |||||| |||||||||| ||| Sbjct: 31241 gtcgctggcattggttcacgccgacgtcgacgacgacaaggttctcttcgtgccgtgggt 31300 Query: 323 ----gtggagaccgacttcaggaccggcgagaacccgtggtgg 361 |||||||| ||||||||||| ||||| |||||||||||| Sbjct: 31301 gtgagtggagactgacttcaggactggcgacaacccgtggtgg 31343
>gb|AF037456.1|AF037456 Fritillaria agrestis cytochrome B6-F complex iron-sulfur subunit precursor (petC) mRNA, complete cds Length = 881 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 191 aacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgt 250 ||||||||||||||||| ||||| ||||| || |||||||| || || ||||||||| | Sbjct: 523 aacaagttcctctgcccctgccacggatcgcaatacaacaatcaagggaaggttgtcagg 582 Query: 251 ggacctgcacctctgtcgctggc 273 ||||||||||| |||||||||| Sbjct: 583 ggacctgcaccgttgtcgctggc 605
>ref|NM_116566.3| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) AT4G03280 (PETC) transcript variant AT4G03280.1 mRNA, complete cds Length = 963 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 561 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 620 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 621 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 678
>ref|NM_178964.1| Arabidopsis thaliana PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) AT4G03280 (PETC) transcript variant AT4G03280.2 mRNA, complete cds Length = 1062 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 660 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 719 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 720 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 777
>gb|AC005275.1| Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM, complete sequence Length = 136335 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 74152 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 74211 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 74212 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 74269
>emb|AL161496.2|ATCHRIV8 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8 Length = 195429 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 92524 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 92583 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 92584 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 92641
>emb|AJ292972.1|ATH292972 Arabidopsis thaliana petC gene for Rieske FeS protein, exons 1-5 Length = 2145 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 1800 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 1859 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 1860 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 1917
>emb|AJ243702.1|ATH243702 Arabidopsis thaliana mRNA for rieske iron-sulfur protein precursor (petC gene) Length = 957 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 537 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 596 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 597 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 654
>gb|AY093726.1| Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, complete cds Length = 633 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 375 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 434 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 435 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 492
>gb|AF410296.1|AF410296 Arabidopsis thaliana AT4g03280/F4C21_21 mRNA, complete cds Length = 1061 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 663 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 722 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 723 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 780
>gb|AF370566.1|AF370566 Arabidopsis thaliana putative component of cytochrome B6-F complex (F4C21.21) mRNA, complete cds Length = 732 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 432 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 491 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 492 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 549
>emb|BX827560.1|CNS0A2RQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS74ZE01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1358 Score = 75.8 bits (38), Expect = 1e-10 Identities = 98/118 (83%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 1016 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 1075 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 1076 gccatggaacaaagctgagaacaagtttctatgtccttgccatggatcccaatacaac 1133
>emb|AJ784852.1| Cyanophora paradoxa mRNA for Rieske iron-sulphur protein (petC-1 gene) Length = 864 Score = 73.8 bits (37), Expect = 5e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 138 tcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagt 197 |||||||||||||||| || ||||| |||||||| || |||||||| | |||||||||| Sbjct: 527 tcaacgccgtctgcactcaccttgggtgcgtcgtcccgtggaacgcgtcggagaacaagt 586 Query: 198 tcctctgcccttgccatggatcccagtac 226 || | ||||| ||||| || ||||||||| Sbjct: 587 tcatgtgcccgtgccacggctcccagtac 615
>dbj|AB025003.1| Cicer arietinum mRNA for plastoquinol-plastocyanin reductase, partial cds Length = 479 Score = 73.8 bits (37), Expect = 5e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 80 aagggtgatcctacctaccttgtggtggagtccgacaagaccctcgccacctacgggatc 139 ||||| |||||||||||||||||||||||| |||| || || || || || ||||| Sbjct: 213 aagggggatcctacctaccttgtggtggagaaagacagaacacttgcaacatatgggatt 272 Query: 140 aacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttc 199 || || || ||||| || || || || |||||||| | ||| |||||||||||||||| Sbjct: 273 aatgcagtatgcactcacctcgggtgtgtcgtgccgtttaacaccgccgagaacaagttt 332 Query: 200 ctctgcccttgccatggatcccagtacaa 228 ||||||| ||||||||||| |||||||| Sbjct: 333 atctgcccctgccatggatctcagtacaa 361
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggt 324 ||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||| | Sbjct: 64261 gtcgctggcattggttcacgccgacgtcgacgacggcaaggttatcttcgtgccgtggat 64202 Query: 325 gga 327 ||| Sbjct: 64201 gga 64199
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 69.9 bits (35), Expect = 8e-09 Identities = 56/63 (88%) Strand = Plus / Minus Query: 265 gtcgctggccctcgttcacgccgacgtcgacgacggcaaggtcgtcttcgtgccatgggt 324 ||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||| | Sbjct: 16113091 gtcgctggcattggttcacgccgacgtcgacgacggcaaggttatcttcgtgccgtggat 16113032 Query: 325 gga 327 ||| Sbjct: 16113031 gga 16113029
>dbj|AU066527.1| Chlamydomonas sp. HS-5 mRNA for hypothetical protein, NaCl inducible, complete cds, clone:NaEX96-104 Length = 578 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 188 gagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaaggt 243 |||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| Sbjct: 419 gagaacaagttcaagtgcccctgccacggatcgcagtacaacaaccagggcaaggt 474
>emb|BX826362.1|CNS0A4FZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZF07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 714 Score = 60.0 bits (30), Expect = 8e-06 Identities = 96/118 (81%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || ||||| |||||||| || || || Sbjct: 561 cgacaagactctagcgacatacggtatcaacgcagtgtgcactcatcttggatgtgttgt 620 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||| ||||||| | || ||||||||||||||||| |||||| Sbjct: 621 gccatggaacaaagctgagtacaagtttccatgtccttgccatggatcccaatacaac 678
>emb|X63605.1|PSPETC P.sativum petC mRNA for chloroplast Rieske FeS protein Length = 880 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 188 gagaacaagttcctctgcccttgccatggatcccagtacaa 228 |||||||||||| ||||||| ||||||||||| |||||||| Sbjct: 551 gagaacaagttcatctgcccctgccatggatctcagtacaa 591 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 80 aagggtgatcctacctaccttgtggt 105 |||||||||||||||||||||||||| Sbjct: 443 aagggtgatcctacctaccttgtggt 468
>gb|AY826843.1| Heterocapsa triquetra clone HTCB61 chloroplast cytochrome b6 mRNA, partial cds; nuclear gene for chloroplast product Length = 531 Score = 54.0 bits (27), Expect = 5e-04 Identities = 87/107 (81%) Strand = Plus / Plus Query: 137 atcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaag 196 |||||||| |||||||| || || |||||||||||||| |||||| || |||| Sbjct: 170 atcaacgcggtctgcacccacctgggctgcgtcgtgccctggaacaggaacgcgaaccgc 229 Query: 197 ttcctctgcccttgccatggatcccagtacaacaaccagggcaaggt 243 ||| ||||||| ||||| ||||| ||||||||| || |||||||||| Sbjct: 230 ttcatctgcccgtgccacggatcgcagtacaacgacgagggcaaggt 276
>emb|AJ784853.1| Cyanophora paradoxa mRNA for Rieske iron-sulphur protein (petC-2 gene) Length = 874 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 140 aacgccgtctgcacgcatcttggctgcgtcgtgccttggaac 181 |||||||||||||| || |||||||||||||| || |||||| Sbjct: 513 aacgccgtctgcactcaccttggctgcgtcgttccctggaac 554 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 55 cgaccgcacgctcgcccaggggctcaagggtgatcctacctacct 99 ||||||| ||||||||||||| |||||||| ||| | |||||||| Sbjct: 428 cgaccgctcgctcgcccagggcctcaagggcgatgccacctacct 472
>emb|BX826457.1|CNS0A4G1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZC01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 532 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 188 gagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||||||||||| || || ||||||||||||||||| |||||| Sbjct: 211 gagaacaagtttctatgtccttgccatggatcccaatacaac 252
>emb|BX826302.1|CNS0A381 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB13ZB05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 790 Score = 52.0 bits (26), Expect = 0.002 Identities = 95/118 (80%) Strand = Plus / Plus Query: 112 cgacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgt 171 ||||||||| || || || ||||| |||||||| || || || | |||||| || || || Sbjct: 436 cgacaagactctagcgacatacggtatcaacgcagtgtgaactcttcttggatgtgttgt 495 Query: 172 gccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtacaac 229 ||| |||||| || ||||||||||| | || ||||||||||||||||| |||||| Sbjct: 496 gccatggaacaaagctgagaacaagtttttatgtccttgccatggatcccaatacaac 553
>emb|X06244.1|SORFES Spinach mRNA for Rieske FeS-precursor protein Length = 1024 Score = 52.0 bits (26), Expect = 0.002 Identities = 98/122 (80%) Strand = Plus / Plus Query: 146 gtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttcctctgc 205 |||||||| |||||||| || || ||||| | || || || |||||||| ||| | || Sbjct: 562 gtctgcacacatcttggatgtgtggtgccatttaatgctgctgagaacaaattcatttgt 621 Query: 206 ccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctgcacctctg 265 || |||||||||||||| ||||| ||||| |||| ||||| || || ||||||||| || Sbjct: 622 ccatgccatggatcccaatacaataaccaaggcagagttgttcgaggccctgcacctttg 681 Query: 266 tc 267 || Sbjct: 682 tc 683
>gb|AF110783.1|AF110783 Volvox carteri f. nagariensis clone G9 rieske iron-sulfur protein precursor (petC) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1159 Score = 50.1 bits (25), Expect = 0.008 Identities = 109/137 (79%) Strand = Plus / Plus Query: 140 aacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgagaacaagttc 199 |||||||| ||||| || | ||||| ||||| |||||| || ||||||||||||||| Sbjct: 417 aacgccgtgtgcacccacttgggctgtgtcgttccttgggtggcggccgagaacaagttc 476 Query: 200 ctctgcccttgccatggatcccagtacaacaaccagggcaaggttgtccgtggacctgca 259 ||||||||||| || || |||||||| |||||||||| |||||||| ||||| Sbjct: 477 aagtgcccttgccacggctctcagtacaatgctgagggcaaggtggtccgtggccctgct 536 Query: 260 cctctgtcgctggccct 276 || ||||| ||||||| Sbjct: 537 ccgctgtctttggccct 553
>gb|AY267656.1| Bigelowiella natans Fe-S subunit of cytochrome c6f complex mRNA, complete cds; nuclear gene for plastid product Length = 1025 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Plus Query: 203 tgcccttgccatggatcccagtac 226 |||||||||||||||||||||||| Sbjct: 630 tgcccttgccatggatcccagtac 653
>emb|X76299.1|CRPETC C.reinhardtii petC gene Length = 1608 Score = 48.1 bits (24), Expect = 0.030 Identities = 57/68 (83%) Strand = Plus / Plus Query: 185 gccgagaacaagttcctctgcccttgccatggatcccagtacaacaaccagggcaaggtt 244 ||||||||||||||| ||||||||||| || || ||||||||| |||||||||| Sbjct: 1104 gccgagaacaagttcaagtgcccttgccacggctctcagtacaacgctgagggcaaggtg 1163 Query: 245 gtccgtgg 252 |||||||| Sbjct: 1164 gtccgtgg 1171 Score = 46.1 bits (23), Expect = 0.12 Identities = 35/39 (89%) Strand = Plus / Plus Query: 140 aacgccgtctgcacgcatcttggctgcgtcgtgccttgg 178 |||||||| ||||| || || |||||||||||||||||| Sbjct: 921 aacgccgtgtgcactcacctgggctgcgtcgtgccttgg 959
>emb|X66009.1|NTRFES1 N.tabacum mRNA for chloroplast Rieske FeS precursor protein 1 Length = 814 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 188 gagaacaagttcctctgcccttgccatggatcccagtacaacaacca 234 ||||||||||| | ||||| ||||||||||| || ||||||||||| Sbjct: 546 gagaacaagtttatttgcccctgccatggatctcaatacaacaacca 592
>emb|X64353.1|NTRFSCBFC N.tabacum mRNA for Rieske Fe/S protein of cytochrome b6/f complex Length = 833 Score = 46.1 bits (23), Expect = 0.12 Identities = 41/47 (87%) Strand = Plus / Plus Query: 188 gagaacaagttcctctgcccttgccatggatcccagtacaacaacca 234 ||||||||||| | ||||| ||||||||||| || ||||||||||| Sbjct: 510 gagaacaagtttatttgcccctgccatggatctcaatacaacaacca 556
>emb|BX572099.1| Prochlorococcus marinus MIT9313 complete genome; segment 5/7 Length = 349746 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 131 tacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaac 181 ||||| |||||||| ||||||| || || |||||||| |||||||||||| Sbjct: 12372 tacggaatcaacgcgatctgcacccacctcggctgcgtggtgccttggaac 12422
>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7 Length = 349122 Score = 46.1 bits (23), Expect = 0.12 Identities = 68/83 (81%) Strand = Plus / Plus Query: 131 tacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgccgccgag 190 ||||| || |||||| ||||||| || || |||||||| ||||| |||||| || || Sbjct: 17466 tacggcattaacgccatctgcacccacctgggctgcgtggtgccctggaacagcggcgcc 17525 Query: 191 aacaagttcctctgcccttgcca 213 ||||||||| | ||||||||||| Sbjct: 17526 aacaagttcatgtgcccttgcca 17548
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 289 cgtcgacgacggcaaggtcgtc 310 |||||||||||||||||||||| Sbjct: 1061203 cgtcgacgacggcaaggtcgtc 1061182
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Plus Query: 130 ctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgc 183 |||||| |||||||| || ||||| || | |||||||| |||||||||||||| Sbjct: 367618 ctacggcatcaacgcagtttgcacccacttgggctgcgtggtgccttggaacgc 367671
>gb|AY826844.1| Isochrysis galbana clone ISCB61 chloroplast cytochrome b6 mRNA, partial cds; nuclear gene for chloroplast product Length = 1010 Score = 44.1 bits (22), Expect = 0.47 Identities = 91/114 (79%) Strand = Plus / Plus Query: 113 gacaagaccctcgccacctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtg 172 ||||||||||||| | ||||| |||||||| || ||||| || || ||||||||||| Sbjct: 408 gacaagaccctcgagaactacgccatcaacgctgtttgcacccacctcggctgcgtcgtc 467 Query: 173 ccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagtac 226 || |||||| |||| || ||||| | ||||||| ||||| || || |||||| Sbjct: 468 ccatggaaccgcgcccagctcaagtacatctgcccgtgccacggctcgcagtac 521
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 cgacggcaaggtcgtcttcgtg 316 |||||||||||||||||||||| Sbjct: 3591653 cgacggcaaggtcgtcttcgtg 3591632
>gb|AY487229.1| Mycobacterium fortuitum PgaE gene, partial cds; putative transcription regulator, hypothetical protein, Erm(39), 3355, and FolD genes, complete cds; and 3359 gene, partial cds Length = 4803 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 280 tcacgccgacgtcgacgacggc 301 |||||||||||||||||||||| Sbjct: 3336 tcacgccgacgtcgacgacggc 3357
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 44.1 bits (22), Expect = 0.47 Identities = 46/54 (85%) Strand = Plus / Minus Query: 130 ctacgggatcaacgccgtctgcacgcatcttggctgcgtcgtgccttggaacgc 183 |||||| |||||||| || ||||| || | |||||||| |||||||||||||| Sbjct: 1253187 ctacggcatcaacgcagtttgcacccacttgggctgcgtggtgccttggaacgc 1253134
>dbj|AB070940.1| Streptomyces avermitilis oligomycin biosynthetic gene cluster Length = 104326 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 295 cgacggcaaggtcgtcttcgtg 316 |||||||||||||||||||||| Sbjct: 46152 cgacggcaaggtcgtcttcgtg 46173
>gb|AC120788.7| Mus musculus chromosome 14, clone RP23-279B13, complete sequence Length = 215810 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 aagcctcctgccagtcctaa 430 |||||||||||||||||||| Sbjct: 14436 aagcctcctgccagtcctaa 14455
>ref|XM_659574.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7062.2), mRNA Length = 1668 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cgacggcaaggtcgtcttcg 314 |||||||||||||||||||| Sbjct: 957 cgacggcaaggtcgtcttcg 976
>ref|XM_754954.1| Ustilago maydis 521 hypothetical protein (UM03900.1) partial mRNA Length = 3015 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 caagttcctctgcccttgcc 212 |||||||||||||||||||| Sbjct: 1628 caagttcctctgcccttgcc 1647
>gb|AC125332.3| Mus musculus BAC clone RP23-113I20 from 3, complete sequence Length = 220068 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gttcctctgcccttgccatg 215 |||||||||||||||||||| Sbjct: 148730 gttcctctgcccttgccatg 148711
>gb|AC121928.2| Mus musculus BAC clone RP24-204F1 from 3, complete sequence Length = 178387 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gttcctctgcccttgccatg 215 |||||||||||||||||||| Sbjct: 151770 gttcctctgcccttgccatg 151789
>emb|AL662824.9| Human DNA sequence from clone XXbac-22I16 on chromosome 6 contains the HLA-DPA1 gene for major histocompatibility complex, class II, DP alpha 1, the HLA-DPB1 gene for major histocompatibility complex, class II, DP beta 1, a ribosomal protein L32 (RPL32) pseudogene, the HLA-DPA2 pseudogene for major histocompatibility complex, class II, DP alpha 2, a pseudogene similar to part of collagens, a novel protein similar to major histocompatibility complex, class II, DP beta 2 (pseudogene), a major histocompatibility complex, class II, DP beta 1 pseudogene, two putative novel transcripts, the COL11A2 gene for collagen, type XI, alpha 2, the RXRB gene for retinoid X receptor, beta, the HKE4 gene for HLA-class II region expressed gene KE4, the 5' end of the HSD17B8 gene for hydroxysteroid (17-beta) dehydrogenase 8 and four CpG islands, complete sequence Length = 187964 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aagttcctctgcccttgcca 213 |||||||||||||||||||| Sbjct: 38027 aagttcctctgcccttgcca 38046
>emb|AL645931.7| Human DNA sequence from clone XXbac-138A21 on chromosome 6 Contains the HLA-DOA, HLA-DPA1 and HLA-DPB1 genes for major histocompatibility complex class II proteins DO alpha, DP alpha 1 and DP beta 1, the HLA-DPA2 major histocompatibility complex class II DP alpha 2 pseudogene, ribosomal protein L32 pseudogene RPL32P1, a pseudogene similar to part of collagens, the 5' end of an HLA class II histocompatibility antigen D or S beta pseudogene, the 5' end of a novel protein similar to major histocompatibility complex class II DP beta 1 precursor and a CpG island, complete sequence Length = 124899 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aagttcctctgcccttgcca 213 |||||||||||||||||||| Sbjct: 63737 aagttcctctgcccttgcca 63756
>ref|XM_783177.1| PREDICTED: Strongylocentrotus purpuratus similar to tripartite motif protein TRIM2 (LOC583257), mRNA Length = 1002 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 gacatcctcgtcgaggattg 33 |||||||||||||||||||| Sbjct: 757 gacatcctcgtcgaggattg 776
>gb|AC090496.28| Mus musculus strain C57BL/6J clone rp23-469n6 map 14, complete sequence Length = 180338 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 aagcctcctgccagtcctaa 430 |||||||||||||||||||| Sbjct: 173101 aagcctcctgccagtcctaa 173120
>emb|CR759795.4| Human DNA sequence from clone DAMC-206D4 on chromosome 6, complete sequence Length = 119898 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 aagttcctctgcccttgcca 213 |||||||||||||||||||| Sbjct: 58173 aagttcctctgcccttgcca 58192
>gb|AC087892.16| Homo sapiens 12q BAC RP11-3L23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 123004 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 aatgcacctgtttcttgtat 480 |||||||||||||||||||| Sbjct: 2788 aatgcacctgtttcttgtat 2769
>gb|AC098615.2| Homo sapiens chromosome 3 clone RP11-268I20, complete sequence Length = 167486 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 457 tataaatgcacctgtttctt 476 |||||||||||||||||||| Sbjct: 151921 tataaatgcacctgtttctt 151940
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 6 tcggcaacgacatcctcgtcgagg 29 |||||||||||||| ||||||||| Sbjct: 2955467 tcggcaacgacatcatcgtcgagg 2955444
>gb|AF336983.1|AF336983 Vaucheria litorea cytochrome b6f complex Rieske FeS protein mRNA, partial cds; nuclear gene for chloroplast product Length = 222 Score = 40.1 bits (20), Expect = 7.3 Identities = 47/56 (83%) Strand = Plus / Plus Query: 170 gtgccttggaacgccgccgagaacaagttcctctgcccttgccatggatcccagta 225 |||||||||||| || || ||||||||| |||| ||||||||||| || ||||| Sbjct: 73 gtgccttggaacaaggctgaaaacaagttcatctgtccttgccatgggtcgcagta 128
>gb|AC048337.28| Homo sapiens 12 BAC RP11-711D18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 107515 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 atgaaagaagagaaaccttt 521 |||||||||||||||||||| Sbjct: 9116 atgaaagaagagaaaccttt 9097
>gb|AC012451.8| Homo sapiens BAC clone RP11-414K19 from 2, complete sequence Length = 188121 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 caagttcctctgcccttgcc 212 |||||||||||||||||||| Sbjct: 179452 caagttcctctgcccttgcc 179433
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 cgtcgacgacggcaaggtcg 308 |||||||||||||||||||| Sbjct: 2036389 cgtcgacgacggcaaggtcg 2036408
>gb|AE005063.1| Halobacterium sp. NRC-1 section 94 of 170 of the complete genome Length = 11844 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 cacggccccaacgaccgcacgctcgccc 71 |||| |||| |||||||||||||||||| Sbjct: 3212 cacgaccccgacgaccgcacgctcgccc 3239
>gb|AF203698.1|AF203698 Rattus norvegicus T calcium channel alpha1G subunit (Cacna1g) gene, partial cds Length = 4171 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 68 gcccaggggctcaagggtgatcct 91 |||||| ||||||||||||||||| Sbjct: 3845 gcccagaggctcaagggtgatcct 3868
>gb|U04283.1|SAPHSA Streptomyces antibioticus IMRU3720 phenoxazinone synthase (phsA) gene, complete cds Length = 2302 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 acgccgacgtcgacgacggc 301 |||||||||||||||||||| Sbjct: 1238 acgccgacgtcgacgacggc 1257 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,409,733 Number of Sequences: 3902068 Number of extensions: 3409733 Number of successful extensions: 61658 Number of sequences better than 10.0: 98 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60949 Number of HSP's gapped (non-prelim): 685 length of query: 538 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 515 effective length of database: 17,143,297,704 effective search space: 8828798317560 effective search space used: 8828798317560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
