Clone Information

BLAST Search Result

Clone Name	baal39l11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_472380.1\| Oryza sativa (japonica cultivar-group), predic...	145	2e-31
2	emb\|AL731639.3\|OSJN00288 Oryza sativa genomic DNA, chromosome 4,...	145	2e-31
3	emb\|AL607005.3\|OSJN00124 Oryza sativa genomic DNA, chromosome 4,...	145	2e-31
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	145	2e-31
5	emb\|AL135788.11\| Human DNA sequence from clone RP11-352G21 on ch...	48	0.038
6	gb\|AC111097.10\| Mus musculus chromosome 3, clone RP23-174G7, com...	42	2.3
7	gb\|AC098732.3\| Mus musculus BAC clone RP23-3L20 from 3, complete...	42	2.3
8	emb\|AL391215.12\| Human DNA sequence from clone RP11-408B19 on ch...	42	2.3
9	emb\|AL354862.11\| Human DNA sequence from clone RP11-83L6 on chro...	42	2.3
10	emb\|AL050344.31\|HSJ799D16 Human DNA sequence from clone RP4-799D...	42	2.3
11	emb\|AL035405.13\|HS21O18 Human DNA sequence from clone RP1-21O18 ...	42	2.3
12	gb\|AC165284.2\| Mus musculus BAC clone RP24-378E14 from chromosom...	42	2.3
13	gb\|AC010188.29\| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Ca...	42	2.3
14	gb\|AC021580.9\| Homo sapiens chromosome 9, clone RP11-1091N2, com...	42	2.3
15	emb\|AL832053.1\|HSM803360 Homo sapiens mRNA; cDNA DKFZp313N1010 (...	42	2.3
16	gb\|AC021581.10\| Homo sapiens chromosome 17, clone RP11-956N15, c...	42	2.3
17	dbj\|AK031828.1\| Mus musculus adult male medulla oblongata cDNA, ...	42	2.3
18	gb\|AC046135.15\| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Can...	42	2.3
19	gb\|AC154592.2\| Mus musculus BAC clone RP23-249J17 from chromosom...	42	2.3
20	gb\|AC154250.2\| Mus musculus BAC clone RP24-193A14 from 14, compl...	42	2.3
21	gb\|CP000108.1\| Chlorobium chlorochromatii CaD3, complete genome	40	9.3
22	ref\|XM_466634.1\| Oryza sativa (japonica cultivar-group), mRNA	40	9.3
23	gb\|AC124978.19\| Mus musculus chromosome 5, clone RP24-107D19, co...	40	9.3
24	gb\|AC161829.5\| Mus musculus 10 BAC RP23-304K21 (Roswell Park Can...	40	9.3
25	gb\|AC124550.4\| Mus musculus BAC clone RP23-211F21 from chromosom...	40	9.3
26	gb\|AC019117.4\| Homo sapiens BAC clone RP11-507K12 from 7, comple...	40	9.3
27	gb\|AC093712.2\| Canis familiaris clone RP81-229G11, complete sequ...	40	9.3
28	emb\|BX005432.7\| Human DNA sequence from clone DASS-352F1 on chro...	40	9.3
29	emb\|AL662781.4\| Human DNA sequence from clone XXbac-1H2 on chrom...	40	9.3
30	emb\|AL662857.3\| Human DNA sequence from clone XXbac-147D4 on chr...	40	9.3
31	emb\|AL353795.13\| Human DNA sequence from clone RP11-182N22 on ch...	40	9.3
32	gb\|AC162381.7\| Mus musculus 10 BAC RP24-528B14 (Roswell Park Can...	40	9.3
33	emb\|CR936918.2\| Human DNA sequence from clone DAAP-191E6 on chro...	40	9.3
34	emb\|CR933842.5\| Human DNA sequence from clone DAMC-22P6 on chrom...	40	9.3
35	gb\|AC009812.17\| Homo sapiens chromosome 8, clone RP11-48B3, comp...	40	9.3
36	emb\|CR753509.3\| Human DNA sequence from clone DADB-246O10 on chr...	40	9.3
37	gb\|AC008433.7\| Homo sapiens chromosome 5 clone CTC-324K20, compl...	40	9.3
38	gb\|AC103783.2\| Homo sapiens chromosome 8, clone RP11-664D7, comp...	40	9.3
39	dbj\|AK135522.1\| Mus musculus 12 days embryo female mullerian duc...	40	9.3
40	gb\|AC093245.2\| Homo sapiens chromosome 5 clone RP11-114J13, comp...	40	9.3
41	ref\|XM_682208.1\| PREDICTED: Danio rerio hypothetical protein LOC...	40	9.3
42	ref\|XM_703639.1\| PREDICTED: Danio rerio hypothetical protein LOC...	40	9.3
43	ref\|XM_690801.1\| PREDICTED: Danio rerio hypothetical protein LOC...	40	9.3
44	gb\|L77962.1\|BBSCG Bamboo mosaic virus, complete genome	40	9.3
45	gb\|AC009110.10\| Homo sapiens chromosome 16 clone RP11-467O15, co...	40	9.3
46	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
47	emb\|BX908738.4\| Human DNA sequence from clone DAMA-148L19 on chr...	40	9.3
48	gb\|AC157523.2\| Pan troglodytes BAC clone CH251-526G6 from chromo...	40	9.3
49	gb\|AC034114.17\| Homo sapiens chromosome 8, clone RP11-775E10, co...	40	9.3
50	dbj\|AP006438.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.3
51	dbj\|AK073760.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.3
52	emb\|BX324144.4\| Pig DNA sequence from clone XX-1044B7, complete ...	40	9.3
53	emb\|AL096770.17\|HSBA150A6 Human DNA sequence from clone RP11-150...	40	9.3
54	emb\|AL807387.10\| Mouse DNA sequence from clone RP23-24J10 on chr...	40	9.3
55	emb\|AL929445.8\| Mouse DNA sequence from clone RP23-185M22 on chr...	40	9.3
56	emb\|CR847939.13\| Zebrafish DNA sequence from clone CH211-262I1 i...	40	9.3
57	emb\|AL831781.8\| Mouse DNA sequence from clone RP23-307O24 on chr...	40	9.3
58	gb\|AC166328.4\| Mus musculus BAC clone RP23-31H5 from chromosome ...	40	9.3
59	emb\|AL731707.12\| Mouse DNA sequence from clone RP23-100C5 on chr...	40	9.3

>ref|XM_472380.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1563

 Score =  145 bits (73), Expect = 2e-31
 Identities = 169/201 (84%)
 Strand = Plus / Plus

                                                                       
Query: 477 tgatcacagcatcagctctgaggacgaagagacacttgtcaggagttgtagtaatctcag 536
           ||||||||||||||| |||||||| ||||| |  ||||||||||||| ||| ||||||| 
Sbjct: 36  tgatcacagcatcagttctgaggaagaagacatgcttgtcaggagttatagcaatctcaa 95

                                                                       
Query: 537 cgtaagctttggctatcattgcaattcttatcagagttttcctcttgaaagtgatgagca 596
           ||| |||||||| || ||||| |||||||||||| ||||| |||| || | ||||||| |
Sbjct: 96  cgtcagctttggataccattgtaattcttatcagtgtttttctctagacactgatgagta 155

                                                                       
Query: 597 tgacacctctccccagatgaggtttgaaagtaatgccatgatgaagtcacgaaatggctc 656
           ||||| ||||||| | | |||| |||||| |||| |||||||||  |||| |||||| ||
Sbjct: 156 tgacatctctcccaacaagaggcttgaaactaataccatgatgacatcacaaaatggatc 215

                                
Query: 657 atttacttgtttatctggtgc 677
            || |||||||| ||||||||
Sbjct: 216 cttcacttgtttgtctggtgc 236

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>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02,
            complete sequence
          Length = 112404

 Score =  145 bits (73), Expect = 2e-31
 Identities = 169/201 (84%)
 Strand = Plus / Minus

                                                                        
Query: 477  tgatcacagcatcagctctgaggacgaagagacacttgtcaggagttgtagtaatctcag 536
            ||||||||||||||| |||||||| ||||| |  ||||||||||||| ||| ||||||| 
Sbjct: 1950 tgatcacagcatcagttctgaggaagaagacatgcttgtcaggagttatagcaatctcaa 1891

                                                                        
Query: 537  cgtaagctttggctatcattgcaattcttatcagagttttcctcttgaaagtgatgagca 596
            ||| |||||||| || ||||| |||||||||||| ||||| |||| || | ||||||| |
Sbjct: 1890 cgtcagctttggataccattgtaattcttatcagtgtttttctctagacactgatgagta 1831

                                                                        
Query: 597  tgacacctctccccagatgaggtttgaaagtaatgccatgatgaagtcacgaaatggctc 656
            ||||| ||||||| | | |||| |||||| |||| |||||||||  |||| |||||| ||
Sbjct: 1830 tgacatctctcccaacaagaggcttgaaactaataccatgatgacatcacaaaatggatc 1771

                                 
Query: 657  atttacttgtttatctggtgc 677
             || |||||||| ||||||||
Sbjct: 1770 cttcacttgtttgtctggtgc 1750



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 73/80 (91%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                        
Query: 106  ttcagggatgaggggagaggaggggctgcatcacctggcccggttcccatctctctgaac 165
            |||||||||| ||||| |||||||||||| ||| |||||||| |||||||| ||||||||
Sbjct: 3222 ttcagggatggggggaaaggaggggctgcgtcaactggcccgattcccatcgctctgaac 3163

                                
Query: 166  ttagatggatgcatctgtga 185
            || |||||||||||||||||
Sbjct: 3162 tt-gatggatgcatctgtga 3144



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 101/125 (80%)
 Strand = Plus / Minus

                                                                        
Query: 189  ccaagaaggttagctcttgtggaaacaccggtcatagccgctgcggcgaagttcataaac 248
            |||||||| |||| |  ||||| ||||| |||||||||||||| || |||||||||  ||
Sbjct: 3030 ccaagaagattagtttctgtgggaacactggtcatagccgctgtggtgaagttcatcgac 2971

                                                                        
Query: 249  ctgtcctgccgtgtcgcatgcgggatcgctgcttaaatagaaataatcccttctcgcttc 308
            ||| |  ||| ||||| |||||||||| || ||| || ||||  || |||||||  ||||
Sbjct: 2970 ctgcctggccctgtcgtatgcgggatcactccttgaacagaagcaaccccttcttacttc 2911

                 
Query: 309  aggtt 313
            |||||
Sbjct: 2910 aggtt 2906



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 308  caggtttggtttgcatttccttttaagtataaaggcaactgtatttggcatgg 360
            ||||| |||||||| ||||| |||||||||||| | | |||||||||||||||
Sbjct: 2120 caggtctggtttgcgtttccatttaagtataaaaggacctgtatttggcatgg 2068

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>emb|AL607005.3|OSJN00124 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0118P14,
             complete sequence
          Length = 158312

 Score =  145 bits (73), Expect = 2e-31
 Identities = 169/201 (84%)
 Strand = Plus / Minus

                                                                         
Query: 477   tgatcacagcatcagctctgaggacgaagagacacttgtcaggagttgtagtaatctcag 536
             ||||||||||||||| |||||||| ||||| |  ||||||||||||| ||| ||||||| 
Sbjct: 94709 tgatcacagcatcagttctgaggaagaagacatgcttgtcaggagttatagcaatctcaa 94650

                                                                         
Query: 537   cgtaagctttggctatcattgcaattcttatcagagttttcctcttgaaagtgatgagca 596
             ||| |||||||| || ||||| |||||||||||| ||||| |||| || | ||||||| |
Sbjct: 94649 cgtcagctttggataccattgtaattcttatcagtgtttttctctagacactgatgagta 94590

                                                                         
Query: 597   tgacacctctccccagatgaggtttgaaagtaatgccatgatgaagtcacgaaatggctc 656
             ||||| ||||||| | | |||| |||||| |||| |||||||||  |||| |||||| ||
Sbjct: 94589 tgacatctctcccaacaagaggcttgaaactaataccatgatgacatcacaaaatggatc 94530

                                  
Query: 657   atttacttgtttatctggtgc 677
              || |||||||| ||||||||
Sbjct: 94529 cttcacttgtttgtctggtgc 94509



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 73/80 (91%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                         
Query: 106   ttcagggatgaggggagaggaggggctgcatcacctggcccggttcccatctctctgaac 165
             |||||||||| ||||| |||||||||||| ||| |||||||| |||||||| ||||||||
Sbjct: 95981 ttcagggatggggggaaaggaggggctgcgtcaactggcccgattcccatcgctctgaac 95922

                                 
Query: 166   ttagatggatgcatctgtga 185
             || |||||||||||||||||
Sbjct: 95921 tt-gatggatgcatctgtga 95903



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 101/125 (80%)
 Strand = Plus / Minus

                                                                         
Query: 189   ccaagaaggttagctcttgtggaaacaccggtcatagccgctgcggcgaagttcataaac 248
             |||||||| |||| |  ||||| ||||| |||||||||||||| || |||||||||  ||
Sbjct: 95789 ccaagaagattagtttctgtgggaacactggtcatagccgctgtggtgaagttcatcgac 95730

                                                                         
Query: 249   ctgtcctgccgtgtcgcatgcgggatcgctgcttaaatagaaataatcccttctcgcttc 308
             ||| |  ||| ||||| |||||||||| || ||| || ||||  || |||||||  ||||
Sbjct: 95729 ctgcctggccctgtcgtatgcgggatcactccttgaacagaagcaaccccttcttacttc 95670

                  
Query: 309   aggtt 313
             |||||
Sbjct: 95669 aggtt 95665



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 308   caggtttggtttgcatttccttttaagtataaaggcaactgtatttggcatgg 360
             ||||| |||||||| ||||| |||||||||||| | | |||||||||||||||
Sbjct: 94879 caggtctggtttgcgtttccatttaagtataaaaggacctgtatttggcatgg 94827

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  145 bits (73), Expect = 2e-31
 Identities = 169/201 (84%)
 Strand = Plus / Minus

                                                                            
Query: 477      tgatcacagcatcagctctgaggacgaagagacacttgtcaggagttgtagtaatctcag 536
                ||||||||||||||| |||||||| ||||| |  ||||||||||||| ||| ||||||| 
Sbjct: 20032046 tgatcacagcatcagttctgaggaagaagacatgcttgtcaggagttatagcaatctcaa 20031987

                                                                            
Query: 537      cgtaagctttggctatcattgcaattcttatcagagttttcctcttgaaagtgatgagca 596
                ||| |||||||| || ||||| |||||||||||| ||||| |||| || | ||||||| |
Sbjct: 20031986 cgtcagctttggataccattgtaattcttatcagtgtttttctctagacactgatgagta 20031927

                                                                            
Query: 597      tgacacctctccccagatgaggtttgaaagtaatgccatgatgaagtcacgaaatggctc 656
                ||||| ||||||| | | |||| |||||| |||| |||||||||  |||| |||||| ||
Sbjct: 20031926 tgacatctctcccaacaagaggcttgaaactaataccatgatgacatcacaaaatggatc 20031867

                                     
Query: 657      atttacttgtttatctggtgc 677
                 || |||||||| ||||||||
Sbjct: 20031866 cttcacttgtttgtctggtgc 20031846



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 73/80 (91%), Gaps = 1/80 (1%)
 Strand = Plus / Minus

                                                                            
Query: 106      ttcagggatgaggggagaggaggggctgcatcacctggcccggttcccatctctctgaac 165
                |||||||||| ||||| |||||||||||| ||| |||||||| |||||||| ||||||||
Sbjct: 20033318 ttcagggatggggggaaaggaggggctgcgtcaactggcccgattcccatcgctctgaac 20033259

                                    
Query: 166      ttagatggatgcatctgtga 185
                || |||||||||||||||||
Sbjct: 20033258 tt-gatggatgcatctgtga 20033240



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 101/125 (80%)
 Strand = Plus / Minus

                                                                            
Query: 189      ccaagaaggttagctcttgtggaaacaccggtcatagccgctgcggcgaagttcataaac 248
                |||||||| |||| |  ||||| ||||| |||||||||||||| || |||||||||  ||
Sbjct: 20033126 ccaagaagattagtttctgtgggaacactggtcatagccgctgtggtgaagttcatcgac 20033067

                                                                            
Query: 249      ctgtcctgccgtgtcgcatgcgggatcgctgcttaaatagaaataatcccttctcgcttc 308
                ||| |  ||| ||||| |||||||||| || ||| || ||||  || |||||||  ||||
Sbjct: 20033066 ctgcctggccctgtcgtatgcgggatcactccttgaacagaagcaaccccttcttacttc 20033007

                     
Query: 309      aggtt 313
                |||||
Sbjct: 20033006 aggtt 20033002



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 308      caggtttggtttgcatttccttttaagtataaaggcaactgtatttggcatgg 360
                ||||| |||||||| ||||| |||||||||||| | | |||||||||||||||
Sbjct: 20032216 caggtctggtttgcgtttccatttaagtataaaaggacctgtatttggcatgg 20032164

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>emb|AL135788.11| Human DNA sequence from clone RP11-352G21 on chromosome 9p23-24.3,
             complete sequence
          Length = 96203

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 378   gaaactcaaaagcaaagtttgtcagaaa 405
             |||||||||||||||||||||| |||||
Sbjct: 69717 gaaactcaaaagcaaagtttgtgagaaa 69690

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>gb|AC111097.10| Mus musculus chromosome 3, clone RP23-174G7, complete sequence
          Length = 206043

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 348    gtatttggcatggcatttgag 368
              |||||||||||||||||||||
Sbjct: 131553 gtatttggcatggcatttgag 131573

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>gb|AC098732.3| Mus musculus BAC clone RP23-3L20 from 3, complete sequence
          Length = 274210

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 348    gtatttggcatggcatttgag 368
              |||||||||||||||||||||
Sbjct: 272187 gtatttggcatggcatttgag 272167

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>emb|AL391215.12| Human DNA sequence from clone RP11-408B19 on chromosome 1 Contains part
              of a novel gene (KIAA1026) and a CpG island, complete
              sequence
          Length = 120551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    gaggggagaggaggggctgca 135
              |||||||||||||||||||||
Sbjct: 119139 gaggggagaggaggggctgca 119119

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>emb|AL354862.11| Human DNA sequence from clone RP11-83L6 on chromosome 9 Contains an
              olfactory receptor pseudsogene, the SYK gene for spleen
              tyrosine kinase and a CpG island, complete sequence
          Length = 153954

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    cagggatgaggggagaggagg 128
              |||||||||||||||||||||
Sbjct: 142892 cagggatgaggggagaggagg 142912

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>emb|AL050344.31|HSJ799D16 Human DNA sequence from clone RP4-799D16 on chromosome 1p34.3-36.1
             Contains the 3' end of a novel gene, complete sequence
          Length = 127109

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   tgggttcagggatgaggggag 122
             |||||||||||||||||||||
Sbjct: 13315 tgggttcagggatgaggggag 13335

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>emb|AL035405.13|HS21O18 Human DNA sequence from clone RP1-21O18 on chromosome 1p35.1-36.23
              Contains the 3' end of a novel gene (KIAA1026), gene
              FLJ23703, a novel pseudogene, the 5' end of a novel gene
              (FLJ10199), a novel gene and a CpG island, complete
              sequence
          Length = 168853

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 115    gaggggagaggaggggctgca 135
              |||||||||||||||||||||
Sbjct: 168266 gaggggagaggaggggctgca 168286

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>gb|AC165284.2| Mus musculus BAC clone RP24-378E14 from chromosome 14, complete
             sequence
          Length = 202193

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 561   ttcttatcagagttttcctct 581
             |||||||||||||||||||||
Sbjct: 70908 ttcttatcagagttttcctct 70928

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>gb|AC010188.29| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 158591

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 102   tgggttcagggatgaggggag 122
             |||||||||||||||||||||
Sbjct: 60568 tgggttcagggatgaggggag 60588

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>gb|AC021580.9| Homo sapiens chromosome 9, clone RP11-1091N2, complete sequence
          Length = 210557

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 108 cagggatgaggggagaggagg 128
           |||||||||||||||||||||
Sbjct: 609 cagggatgaggggagaggagg 629

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>emb|AL832053.1|HSM803360 Homo sapiens mRNA; cDNA DKFZp313N1010 (from clone DKFZp313N1010)
          Length = 3872

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  cagggatgaggggagaggagg 128
            |||||||||||||||||||||
Sbjct: 1468 cagggatgaggggagaggagg 1488

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>gb|AC021581.10| Homo sapiens chromosome 17, clone RP11-956N15, complete sequence
          Length = 181607

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 108  cagggatgaggggagaggagg 128
            |||||||||||||||||||||
Sbjct: 5903 cagggatgaggggagaggagg 5883

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>dbj|AK031828.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330410L21
            product:unclassifiable, full insert sequence
          Length = 3872

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 348  gtatttggcatggcatttgag 368
            |||||||||||||||||||||
Sbjct: 2859 gtatttggcatggcatttgag 2839

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>gb|AC046135.15| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 175833

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 102    tgggttcagggatgaggggag 122
              |||||||||||||||||||||
Sbjct: 106867 tgggttcagggatgaggggag 106847

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>gb|AC154592.2| Mus musculus BAC clone RP23-249J17 from chromosome 14, complete sequence
          Length = 211647

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 108    cagggatgaggggagaggagg 128
              |||||||||||||||||||||
Sbjct: 111227 cagggatgaggggagaggagg 111207

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>gb|AC154250.2| Mus musculus BAC clone RP24-193A14 from 14, complete sequence
          Length = 146388

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    cagggatgaggggagaggagg 128
              |||||||||||||||||||||
Sbjct: 130572 cagggatgaggggagaggagg 130592

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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 620     ttgaaagtaatgccatgatg 639
               ||||||||||||||||||||
Sbjct: 1609855 ttgaaagtaatgccatgatg 1609874

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>ref|XM_466634.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1072

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 atagagaagatggtggatga 455
           ||||||||||||||||||||
Sbjct: 280 atagagaagatggtggatga 299

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>gb|AC124978.19| Mus musculus chromosome 5, clone RP24-107D19, complete sequence
          Length = 182405

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 653   gctcatttacttgtttatct 672
             ||||||||||||||||||||
Sbjct: 67763 gctcatttacttgtttatct 67744

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>gb|AC161829.5| Mus musculus 10 BAC RP23-304K21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 196522

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gccaatttgggtttttaatc 90
             ||||||||||||||||||||
Sbjct: 47230 gccaatttgggtttttaatc 47249

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>gb|AC124550.4| Mus musculus BAC clone RP23-211F21 from chromosome 1, complete sequence
          Length = 204588

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   ggggagaggaggggctgcat 136
             ||||||||||||||||||||
Sbjct: 89881 ggggagaggaggggctgcat 89862

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>gb|AC019117.4| Homo sapiens BAC clone RP11-507K12 from 7, complete sequence
          Length = 137228

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tttggtttgcatttcctttt 331
             ||||||||||||||||||||
Sbjct: 86699 tttggtttgcatttcctttt 86680

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>gb|AC093712.2| Canis familiaris clone RP81-229G11, complete sequence
          Length = 133924

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tggatgatttgttttatgag 468
             ||||||||||||||||||||
Sbjct: 18058 tggatgatttgttttatgag 18039

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>emb|BX005432.7| Human DNA sequence from clone DASS-352F1 on chromosome 6, complete
             sequence
          Length = 56644

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   cagaaatattatacctttat 419
             ||||||||||||||||||||
Sbjct: 34518 cagaaatattatacctttat 34499

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>emb|AL662781.4| Human DNA sequence from clone XXbac-1H2 on chromosome 6 contains the
            OR5U1, OR5V1 and OR12D3 genes for olfactory receptor,
            family 5, subfamily U, member1, subfamily V, member 1 and
            family 12, subfamily D, member 3, the OR2B4P pseudogene
            for olfactory receptor, family 2, subfamily B, member 4
            and a DEAD/H box polypeptide 6 (DDX6) pseudogene,
            complete sequence
          Length = 106642

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  cagaaatattatacctttat 419
            ||||||||||||||||||||
Sbjct: 7301 cagaaatattatacctttat 7282

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>emb|AL662857.3| Human DNA sequence from clone XXbac-147D4 on chromosome 6 contains the
             OR5U1 gene for olfactory receptor, family 5, subfamily U,
             member 1, the OR2H4P, OR2G1P, OR2U1P, OR2U2P, OR2B4P
             pseudogenes for olfactory receptor, family 2, subfamily H,
             member 4, subfamily G, member 1, subfamily U, member 1,
             subfamily U, member 2, subfamily B, member 4 and a DEAD/H
             (Asp-Glu-Ala-Asp) box polypeptide 6 (DDX6) (RNA helicase,
             54 kD) pseudogene, complete sequence
          Length = 136687

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   cagaaatattatacctttat 419
             ||||||||||||||||||||
Sbjct: 84814 cagaaatattatacctttat 84795

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>emb|AL353795.13| Human DNA sequence from clone RP11-182N22 on chromosome 9 Contains a
             novel gene, the VCP gene for valosin-containing protein,
             the FANCG gene for Fanconi anemia, complementation group G
             (FAG, XRCC9), the gene for phosphatidylinositol glycan
             class O (PIGO), a novel gene, the STOML2 gene for stomatin
             (EPB72)-like 2 (SLP-2), a novel gene (KIAA1539)
             (FLJ11560), a zinc finger protein pseudogene, the 5' end
             of the UNC13 gene for unc-13-like (C. elegans) (hmunc13)
             and nine CpG islands, complete sequence
          Length = 195102

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 567   tcagagttttcctcttgaaa 586
             ||||||||||||||||||||
Sbjct: 82720 tcagagttttcctcttgaaa 82701

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>gb|AC162381.7| Mus musculus 10 BAC RP24-528B14 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 150712

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gccaatttgggtttttaatc 90
             ||||||||||||||||||||
Sbjct: 82577 gccaatttgggtttttaatc 82558

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>emb|CR936918.2| Human DNA sequence from clone DAAP-191E6 on chromosome 6, complete
             sequence
          Length = 52589

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   cagaaatattatacctttat 419
             ||||||||||||||||||||
Sbjct: 28478 cagaaatattatacctttat 28459

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>emb|CR933842.5| Human DNA sequence from clone DAMC-22P6 on chromosome 6, complete
            sequence
          Length = 13214

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  cagaaatattatacctttat 419
            ||||||||||||||||||||
Sbjct: 4317 cagaaatattatacctttat 4298

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>gb|AC009812.17| Homo sapiens chromosome 8, clone RP11-48B3, complete sequence
          Length = 155405

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    ttaaatagaaataatccctt 300
              ||||||||||||||||||||
Sbjct: 129708 ttaaatagaaataatccctt 129727

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>emb|CR753509.3| Human DNA sequence from clone DADB-246O10 on chromosome 6, complete
             sequence
          Length = 127540

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   cagaaatattatacctttat 419
             ||||||||||||||||||||
Sbjct: 69701 cagaaatattatacctttat 69682

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>gb|AC008433.7| Homo sapiens chromosome 5 clone CTC-324K20, complete sequence
          Length = 90826

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ggtttggtttgcatttcctt 329
             ||||||||||||||||||||
Sbjct: 72975 ggtttggtttgcatttcctt 72956

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>gb|AC103783.2| Homo sapiens chromosome 8, clone RP11-664D7, complete sequence
          Length = 109941

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 563   cttatcagagttttcctctt 582
             ||||||||||||||||||||
Sbjct: 84384 cttatcagagttttcctctt 84365

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>dbj|AK135522.1| Mus musculus 12 days embryo female mullerian duct includes
            surrounding region cDNA, RIKEN full-length enriched
            library, clone:6820442G04 product:unclassifiable, full
            insert sequence
          Length = 1573

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 481  cacagcatcagctctgagga 500
            ||||||||||||||||||||
Sbjct: 1503 cacagcatcagctctgagga 1484

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>gb|AC093245.2| Homo sapiens chromosome 5 clone RP11-114J13, complete sequence
          Length = 110283

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   ggtttggtttgcatttcctt 329
             ||||||||||||||||||||
Sbjct: 48908 ggtttggtttgcatttcctt 48889

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>ref|XM_682208.1| PREDICTED: Danio rerio hypothetical protein LOC565159, transcript
           variant 1 (LOC565159), mRNA
          Length = 1726

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 579 tcttgaaagtgatgagcatgacac 602
           |||||||||||||||| |||||||
Sbjct: 433 tcttgaaagtgatgaggatgacac 456

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>ref|XM_703639.1| PREDICTED: Danio rerio hypothetical protein LOC565159, transcript
           variant 2 (LOC565159), mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 579 tcttgaaagtgatgagcatgacac 602
           |||||||||||||||| |||||||
Sbjct: 144 tcttgaaagtgatgaggatgacac 167

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>ref|XM_690801.1| PREDICTED: Danio rerio hypothetical protein LOC567507 (LOC567507),
           mRNA
          Length = 1726

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 579 tcttgaaagtgatgagcatgacac 602
           |||||||||||||||| |||||||
Sbjct: 433 tcttgaaagtgatgaggatgacac 456

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>gb|L77962.1|BBSCG Bamboo mosaic virus, complete genome
          Length = 6365

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 316  gtttgcatttccttttaagt 335
            ||||||||||||||||||||
Sbjct: 1965 gtttgcatttccttttaagt 1946

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>gb|AC009110.10| Homo sapiens chromosome 16 clone RP11-467O15, complete sequence
          Length = 188763

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 571   agttttcctcttgaaagtga 590
             ||||||||||||||||||||
Sbjct: 96615 agttttcctcttgaaagtga 96596

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 436      atagagaagatggtggatga 455
                ||||||||||||||||||||
Sbjct: 23793441 atagagaagatggtggatga 23793460

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>emb|BX908738.4| Human DNA sequence from clone DAMA-148L19 on chromosome 6, complete
             sequence
          Length = 94877

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   cagaaatattatacctttat 419
             ||||||||||||||||||||
Sbjct: 83884 cagaaatattatacctttat 83865

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>gb|AC157523.2| Pan troglodytes BAC clone CH251-526G6 from chromosome unknown, complete
             sequence
          Length = 165776

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 571   agttttcctcttgaaagtga 590
             ||||||||||||||||||||
Sbjct: 64589 agttttcctcttgaaagtga 64570

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>gb|AC034114.17| Homo sapiens chromosome 8, clone RP11-775E10, complete sequence
          Length = 154210

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    ttaaatagaaataatccctt 300
              ||||||||||||||||||||
Sbjct: 134905 ttaaatagaaataatccctt 134886

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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0030C08
          Length = 163423

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   atagagaagatggtggatga 455
             ||||||||||||||||||||
Sbjct: 15107 atagagaagatggtggatga 15126

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>dbj|AK073760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067C04, full
           insert sequence
          Length = 1072

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 436 atagagaagatggtggatga 455
           ||||||||||||||||||||
Sbjct: 280 atagagaagatggtggatga 299

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>emb|BX324144.4| Pig DNA sequence from clone XX-1044B7, complete sequence
          Length = 124310

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    agccaatttgggtttttaat 89
             ||||||||||||||||||||
Sbjct: 93836 agccaatttgggtttttaat 93855

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>emb|AL096770.17|HSBA150A6 Human DNA sequence from clone RP11-150A6 on chromosome 6 Contains
            genes OR5U1, OR5V1 and OR12D3 for olfactory receptors
            5U1, 5V1 and 12D3, the 3' end of olfactory receptor 2B4
            pseudogene OR2B4P, a DDX6 (DEAD/H (Asp-Glu-Ala-Asp/His)
            box polypeptide 6 (RNA helicase, 54kD)) pseudogene, STSs
            and GSSs, complete sequence
          Length = 97392

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  cagaaatattatacctttat 419
            ||||||||||||||||||||
Sbjct: 1977 cagaaatattatacctttat 1958

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>emb|AL807387.10| Mouse DNA sequence from clone RP23-24J10 on chromosome 4, complete
              sequence
          Length = 241148

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 481    cacagcatcagctctgagga 500
              ||||||||||||||||||||
Sbjct: 101151 cacagcatcagctctgagga 101170

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>emb|AL929445.8| Mouse DNA sequence from clone RP23-185M22 on chromosome 4, complete
             sequence
          Length = 203623

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 281   ttaaatagaaataatcccttctcg 304
             ||||||| ||||||||||||||||
Sbjct: 82499 ttaaataaaaataatcccttctcg 82476

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>emb|CR847939.13| Zebrafish DNA sequence from clone CH211-262I1 in linkage group 11,
              complete sequence
          Length = 181988

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 579    tcttgaaagtgatgagcatgacac 602
              |||||||||||||||| |||||||
Sbjct: 106743 tcttgaaagtgatgaggatgacac 106766

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>emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chromosome 2, complete
              sequence
          Length = 140953

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     acctaggagccaatttgggt 82
              ||||||||||||||||||||
Sbjct: 112960 acctaggagccaatttgggt 112941

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>gb|AC166328.4| Mus musculus BAC clone RP23-31H5 from chromosome 5, complete sequence
          Length = 215189

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 653    gctcatttacttgtttatct 672
              ||||||||||||||||||||
Sbjct: 186020 gctcatttacttgtttatct 186001

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>emb|AL731707.12| Mouse DNA sequence from clone RP23-100C5 on chromosome 2, complete
              sequence
          Length = 205581

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tgaggggagaggaggggctg 133
              ||||||||||||||||||||
Sbjct: 188589 tgaggggagaggaggggctg 188608


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,914,706
Number of Sequences: 3902068
Number of extensions: 6914706
Number of successful extensions: 147029
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146788
Number of HSP's gapped (non-prelim): 238
length of query: 677
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 654
effective length of database: 17,143,297,704
effective search space: 11211716698416
effective search space used: 11211716698416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result