ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39k24 |
|---|---|
| Clone Library Name | barley_pub |
>ALLP_BACSU (P94575) Probable allantoin permease (Allantoin transport protein)| Length = 490 Score = 60.8 bits (146), Expect = 2e-09 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 1/130 (0%) Frame = +2 Query: 2 GQVISDPIELLSRIGGPATKVLAIFGXXXXXXXXXXXXXXXXPANTLVALAPQXXXXXXX 181 G+ I D +++L+R P VL++ PA + P+ Sbjct: 291 GEPIWDVVDILARFDNPYVIVLSVITLCIATISVNVAANIVSPAYDIANALPKYINFKRG 350 Query: 182 XXXXXXXXXXXQPWRLLSSSES-FVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDAL 358 PW+L+ S+ S + F L+G ++GP+ G+++AD++I+R+ L VD L Sbjct: 351 SFITALLALFTVPWKLMESATSVYAFLGLIGG--MLGPVAGVMMADYFIIRKRELSVDDL 408 Query: 359 YSEEDDSPYY 388 YSE Y+ Sbjct: 409 YSETGRYVYW 418
>FUR4_SCHPO (Q10279) Uracil permease| Length = 581 Score = 55.8 bits (133), Expect = 6e-08 Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 7/137 (5%) Frame = +2 Query: 2 GQVISDPIELLSRI-------GGPATKVLAIFGXXXXXXXXXXXXXXXXPANTLVALAPQ 160 G + DP +LL+ G A FG N L AL P Sbjct: 318 GTTLWDPTQLLASFLDHSNAHGVRAGVFFIAFGLCIAQLGVNIAANSVSAGNDLSALLPT 377 Query: 161 XXXXXXXXXXXXXXXXXXQPWRLLSSSESFVFTWLLGNAALMGPIGGIVLADHYIVRRTA 340 PW LLSS+ +F T+L + + G+++AD+Y VR+ Sbjct: 378 VINVRRGGYIASIIALCMCPWNLLSSNNNFT-TYLSSYSVFLSSFAGVIIADYYFVRKGL 436 Query: 341 LDVDALYSEEDDSPYYF 391 + V LYS SPYYF Sbjct: 437 IRVAPLYSSSSSSPYYF 453
>ALLP_ECOLI (P75712) Putative allantoin permease (Allantoin transport protein)| Length = 484 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Frame = +2 Query: 140 LVALAPQXXXXXXXXXXXXXXXXXXQPWRLLSSSES-FVFTWLLGNAALMGPIGGIVLAD 316 + A+AP PW+L+ + +S ++F ++G ++GP+ G+++A Sbjct: 337 IAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGG--MLGPVIGVMMAH 394 Query: 317 HYIVRRTALDVDALYSEEDDSPYY 388 +++V R +++D LY+ D YY Sbjct: 395 YFVVMRGQINLDELYTAPGDYKYY 418
>FUI1_YEAST (P38196) Uridine permease| Length = 639 Score = 43.5 bits (101), Expect = 3e-04 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = +2 Query: 128 PANT-LVALAPQXXXXXXXXXXXXXXXXXXQPWRLLSSSESFVFTWLLGNAALMGPIGGI 304 PA T L AL P+ PW LLSSS F T L A + I G+ Sbjct: 441 PAGTDLTALLPKFINIRRGSYICALISLAICPWDLLSSSSKFT-TALAAYAVFLSAIAGV 499 Query: 305 VLADHYIVRRTALDVDALYSEEDDSPYYF 391 + AD++IVR+ +++ Y+++ S Y + Sbjct: 500 ISADYFIVRKGYVNIFHCYTDKPGSYYMY 528
>FUR4_YEAST (P05316) Uracil permease| Length = 633 Score = 39.3 bits (90), Expect = 0.005 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +2 Query: 218 PWRLLSSSESFVFTWLLGNAALMGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 391 PW L+++S F L A + I G+V +D+++VRR + + +YS + S Y + Sbjct: 455 PWNLMATSSKFTMA-LSAYAIFLSSIAGVVCSDYFVVRRGYIKLTHIYSHQKGSFYMY 511
>DAL4_YEAST (Q04895) Allantoin permease (Allantoin transport protein)| Length = 635 Score = 37.4 bits (85), Expect = 0.021 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = +2 Query: 218 PWRLLSSSESFVFTWLLGNAAL-MGPIGGIVLADHYIVRRTALDVDALYSEEDDSPYYF 391 PW L++SS F T LG A+ + I G++ AD+++VRR + + L+ + S Y F Sbjct: 457 PWNLMASSSKF--TSALGAYAIFLSSIAGVICADYFVVRRGYVKLTHLFLAQKGSFYMF 513
>UBP20_HUMAN (Q9Y2K6) Ubiquitin carboxyl-terminal hydrolase 20 (EC 3.1.2.15)| (Ubiquitin thioesterase 20) (Ubiquitin-specific-processing protease 20) (Deubiquitinating enzyme 20) Length = 913 Score = 33.5 bits (75), Expect = 0.30 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = -3 Query: 313 REHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGERECL 158 R+ D+SD +R P EDE L+ R +GD + R G + E E L Sbjct: 261 RDSDSSDTDEKREGDRSPSEDEFLSCDSSSDRGEGDGQGRGGGSSQAETELL 312
>SP96_DICDI (P14328) Spore coat protein SP96| Length = 600 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -1 Query: 315 SASTMPPIGPMSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATRV 136 SA++ P +++ PSS + S S+ S++ +SAP ++ + AS++ Sbjct: 472 SAASSSPSSSAASSSPSSSASSSSSPSSSASSSSAPSSSASSSSAPSSSASSSSASSSSA 531 Query: 135 FAGATTLAAMLVVMMA 88 + ATT A + A Sbjct: 532 SSAATTAATTIATTAA 547 Score = 28.9 bits (63), Expect = 7.3 Identities = 23/85 (27%), Positives = 36/85 (42%) Frame = -1 Query: 315 SASTMPPIGPMSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATRV 136 +AS+ P S++ PSS + S SS + PSS+ +S+ ++ + A+ T Sbjct: 482 AASSSPSSSASSSSSPSSSASS--SSAPSSSASSSSAPSSSASSSSASSSSASSAATTAA 539 Query: 135 FAGATTLAAMLVVMMARVIPKMART 61 ATT A A A T Sbjct: 540 TTIATTAATTTATTTATTATTTATT 564
>TRPA_GLOVI (Q7NHC5) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 276 Score = 30.4 bits (67), Expect = 2.5 Identities = 26/91 (28%), Positives = 43/91 (47%) Frame = -1 Query: 285 MSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATRVFAGATTLAAM 106 ++A P + + L L R+G + S PLA+ A+ATR A TT A+ Sbjct: 29 ITAGDPDLETTAEALLTLD-RNGADLLELGLPYSDPLADGPTIQAAATRALARGTTPGAV 87 Query: 105 LVVMMARVIPKMARTLVAGPPMRLRSSMGSE 13 L ++AR+ P++ L+ L ++G E Sbjct: 88 L-DLVARLTPELRAPLIVFTYFNLILAVGIE 117
>IF2_PSEU2 (Q4ZNR2) Translation initiation factor IF-2| Length = 841 Score = 30.4 bits (67), Expect = 2.5 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -3 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 197 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Q Sbjct: 86 VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARSQPAASQ 142
>PRM2_MACNE (P35298) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = -3 Query: 313 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 146 R S+RPHE + G+D+ G E+ P ++ RG R C RR Sbjct: 5 RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64 Query: 145 HQ 140 H+ Sbjct: 65 HR 66
>PRM2_MACFU (P61253) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 103 Score = 30.0 bits (66), Expect = 3.3 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Frame = -3 Query: 313 REHDASDRPHERRVSEQPGEDEALAGAEQ----PPRLQGDAEQRRGERTLGERECLRRER 146 R S+RPHE + G+D+ G E+ P ++ RG R C RR Sbjct: 5 RMRSLSERPHEVHGQQVHGQDQGHNGQEEQGLNPEHVEVYERTHRGHSHHRRRRCSRRRL 64 Query: 145 HQ 140 H+ Sbjct: 65 HR 66
>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle| protein 1) Length = 285 Score = 29.6 bits (65), Expect = 4.3 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Frame = -3 Query: 310 EHDASDRPHERRVS------EQPGEDEALAGAEQPPRLQGDAEQRRGERTLGE 170 EH + ++P + ++S EQP + A EQP Q E GE++LGE Sbjct: 132 EHASGEQPSDEQLSGEHASGEQPSGEHA--SGEQPSGEQPSGEHASGEQSLGE 182
>ASPX_VULVU (P53353) Sperm acrosomal protein FSA-ACR.1 precursor (Fragment)| Length = 349 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = -3 Query: 310 EHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGER 167 E ++RP + S + E A AEQ Q +EQ GE+ LGE+ Sbjct: 211 EQAVAERPSGEQASIEKASSEQ-ASAEQASAEQASSEQASGEKPLGEQ 257 Score = 28.5 bits (62), Expect = 9.6 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = -3 Query: 310 EHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGER 167 EH + ++P EQP +++ EQP + EQ GE++LGE+ Sbjct: 111 EHTSGEQPS----GEQPSGEKS--SGEQPSGEKSSGEQPSGEKSLGEQ 152
>IF2_PSE14 (Q48E77) Translation initiation factor IF-2| Length = 843 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -3 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 197 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Q Sbjct: 86 VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARNQPAAGQ 142
>SBCC_PSEAE (Q9HWB8) Nuclease sbcCD subunit C| Length = 1211 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -3 Query: 265 QPGEDEALAGAEQPPR--LQGDAEQRRGERTLGERECLRRERHQ 140 Q D L A+ P R Q ++E RR ERTL ER+ L R+ +Q Sbjct: 357 QAQADNHLRQAQAPLREAFQLESEARRLERTLAERQELHRQSNQ 400
>IF2_PSEPF (Q3KI84) Translation initiation factor IF-2| Length = 837 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/61 (31%), Positives = 27/61 (44%) Frame = -3 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRG 188 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Sbjct: 86 VRKKKVFVQRSPEEIEAERKRELDERRAVENAARQKAEEEARVRAEEEARRQPAAPSAPA 145 Query: 187 E 185 E Sbjct: 146 E 146
>IF2_PSESM (Q87WQ5) Translation initiation factor IF-2| Length = 841 Score = 29.3 bits (64), Expect = 5.6 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = -3 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQ 197 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q A Q Sbjct: 86 VRKKKVFVQRSPEEIEAERKREMDERRAVENAARQKAEEEAKRRAEEDARNQPAAGQ 142
>IF2_PSEF5 (Q4KIF6) Translation initiation factor IF-2| Length = 838 Score = 28.9 bits (63), Expect = 7.3 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -3 Query: 367 LRVKRVDVQRSTPHYIVIREHDASDRPHERRVSEQPGEDEALAGAEQPPRLQ 212 +R K+V VQRS R+ + +R + Q E+EA AE+ R Q Sbjct: 86 VRKKKVFVQRSPEEIEAERQRELEERRAVENAARQKAEEEAKRRAEEEARRQ 137
>HISX_THIDN (Q30TA4) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 430 Score = 28.9 bits (63), Expect = 7.3 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Frame = -1 Query: 279 AAFPSSQVKTKLSLELSSRHG---CKAMPSSAVASAPLANVNVCGASATRVFAGATTLAA 109 AA+PSS + + +++ C P + LA ++CG S GA+ +AA Sbjct: 136 AAYPSSLLMNVIPAQVAGVQNIVVCTPTPENEPNELLLAACHLCGVSEVYKVGGASAIAA 195 Query: 108 MLVVMMARVIPKMARTLVAGP 46 M IPK+ ++ GP Sbjct: 196 M--AYGTETIPKV--DVITGP 212
>CARB_CAUCR (Q9A4D6) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1099 Score = 28.9 bits (63), Expect = 7.3 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +2 Query: 305 VLADHYIVRRTALDVDALYSEED 373 +L DHY+ R T +DVDAL +D Sbjct: 762 ILLDHYLSRATEVDVDALCDGKD 784
>SMG5_HUMAN (Q9UPR3) Protein SMG5 (SMG-5 homolog) (EST1-like protein B)| (LPTS-interacting protein) (LPTS-RP1) Length = 1016 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = -3 Query: 310 EHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGERECLRRERH 143 + D +D P S++P E E E PP E R+ R CLRR RH Sbjct: 414 QSDGTDEPE----SKEPVEKEEEPDPEPPPVTPQVGEGRKS-RKFSRLSCLRRRRH 464
>GP63_LEIME (P43150) Leishmanolysin C1 precursor (EC 3.4.24.36) (Cell surface| protease) (Major surface glycoprotein) (Protein gp63) (Promastigote surface endopeptidase) (Major surface protease) Length = 646 Score = 28.5 bits (62), Expect = 9.6 Identities = 19/58 (32%), Positives = 26/58 (44%) Frame = -1 Query: 225 RHGCKAMPSSAVASAPLANVNVCGASATRVFAGATTLAAMLVVMMARVIPKMARTLVA 52 RH C A P +A+A A G +A AGA + M ARV+ +A +A Sbjct: 10 RHRCVAAPLVRLAAAGAAVTVAVGTAAAWAHAGAPQHRCIHDAMQARVLQSVAAQRMA 67
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 28.5 bits (62), Expect = 9.6 Identities = 19/70 (27%), Positives = 38/70 (54%) Frame = -1 Query: 315 SASTMPPIGPMSAAFPSSQVKTKLSLELSSRHGCKAMPSSAVASAPLANVNVCGASATRV 136 +++T P+++A +S T +S S + +P+S+V+S PL++ N S T Sbjct: 381 TSATSASSTPLTSA--NSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSAN----STTAT 434 Query: 135 FAGATTLAAM 106 A +T L+++ Sbjct: 435 SASSTPLSSV 444
>APBB1_HUMAN (O00213) Amyloid beta A4 precursor protein-binding family B member| 1 (Fe65 protein) Length = 710 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = -3 Query: 310 EHDASDRPHERRVSEQPGEDEALAGAEQPPRLQ 212 E D D E +S PG E L E PPR Q Sbjct: 161 EEDDDDEEEEEDLSSPPGLPEPLESVEAPPRPQ 193
>MDTG_SALTY (Q8ZQ25) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 7/31 (22%) Frame = +2 Query: 260 WLLG-------NAALMGPIGGIVLADHYIVR 331 W LG + AL+GP+ G +LADHY +R Sbjct: 140 WALGTLSTGGVSGALLGPLAGGLLADHYGLR 170
>MDTG_SALTI (Q8Z7L7) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 7/31 (22%) Frame = +2 Query: 260 WLLG-------NAALMGPIGGIVLADHYIVR 331 W LG + AL+GP+ G +LADHY +R Sbjct: 140 WALGTLSTGGVSGALLGPLAGGLLADHYGLR 170
>MDTG_SALPA (Q5PGY0) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 7/31 (22%) Frame = +2 Query: 260 WLLG-------NAALMGPIGGIVLADHYIVR 331 W LG + AL+GP+ G +LADHY +R Sbjct: 140 WALGTLSTGGVSGALLGPLAGGLLADHYGLR 170
>MDTG_SALCH (Q57QK4) Multidrug resistance protein mdtG| Length = 404 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 7/31 (22%) Frame = +2 Query: 260 WLLG-------NAALMGPIGGIVLADHYIVR 331 W LG + AL+GP+ G +LADHY +R Sbjct: 140 WALGTLSTGGVSGALLGPLAGGLLADHYGLR 170
>ARO1_PNECA (Q12659) Pentafunctional AROM polypeptide [Includes:| 3-dehydroquinate synthase (EC 4.2.3.4); 3-dehydroquinate dehydratase (EC 4.2.1.10) (3-dehydroquinase); Shikimate dehydrogenase (EC 1.1.1.25); Shikimate kinase (EC 2.7.1.71); 3-phosphoshikima Length = 1581 Score = 28.5 bits (62), Expect = 9.6 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 14/82 (17%) Frame = -1 Query: 219 GCKAMPSSAV-------ASAPLANVNVCGASATRVFAGATTLAA-------MLVVMMARV 82 GC PS + A+ PLA + G S T G+ +L +L M V Sbjct: 633 GCYTCPSEYIIEGDATSATYPLAIAAITGGSCTISNVGSASLQGDSKFSEYILKPMGCEV 692 Query: 81 IPKMARTLVAGPPMRLRSSMGS 16 + T + GPP S+GS Sbjct: 693 VQSPTTTYIKGPPKGKLKSLGS 714
>HDAC4_CHICK (P83038) Histone deacetylase 4 (HD4)| Length = 1080 Score = 28.5 bits (62), Expect = 9.6 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 313 REHDASDRPHERRVSEQPGEDEALAGAEQPPRLQGDAEQRRGERTLGERECLRRERHQ 140 R+H+ R HE ++ E + E LA Q L+ QR+ E+ E+E ++ R Q Sbjct: 95 RQHEQLSRQHEAQLHEHIKQQEMLAMKHQQELLE---HQRKLEQHRQEQELEKQHREQ 149 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,830,456 Number of Sequences: 219361 Number of extensions: 559891 Number of successful extensions: 2598 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2587 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
