ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39k24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 218 bits (110), Expect = 1e-53 Identities = 259/306 (84%), Gaps = 2/306 (0%) Strand = Plus / Plus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||||||||||||||| ||||| ||| Sbjct: 27096987 ttcacgttcgccaagggggcgctggtcaccgcgttgctcggcatcgccttccagccatgg 27097046 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggctgctcggaaacgcggcgctc 283 ||||||||||||||||||||||||||||||| ||| ||||||||||| || |||| ||| Sbjct: 27097047 cggctgctcagctccagcgagagcttcgtctacacatggctgctcggctactcggctctc 27097106 Query: 284 atggggcctatcggaggcatcgtgctcgcggatcactatatagtgcggcgtactgcgttg 343 ||||| || |||||||| ||| | ||||| || ||||| || || ||||| || ||| || Sbjct: 27097107 atgggcccgatcggagggatcatcctcgccgaccactacatcgtccggcgaaccgcgctg 27097166 Query: 344 gacgtcgacgcgctttactcggaggaagacgacagcccctactacttccagggcggcttc 403 |||||||||||||| ||||||||||| | || | || ||||| ||||||||||| ||| Sbjct: 27097167 gacgtcgacgcgctctactcggaggacagccacgggccttactatttccagggcggtttc 27097226 Query: 404 aacgttgctgcgatggtggcgatggcggcaggattcgccgccg-tcgtgccggggttctt 462 ||||| || || |||| |||||||||||| ||| | | ||||| |||||||||| ||| | Sbjct: 27097227 aacgtcgccgccatggcggcgatggcggccggagttg-cgccgatcgtgccgggattcct 27097285 Query: 463 gcacaa 468 |||||| Sbjct: 27097286 gcacaa 27097291 Score = 133 bits (67), Expect = 6e-28 Identities = 118/135 (87%) Strand = Plus / Plus Query: 2 ggccaggtcatctccgaccccatcgagctcctcagccgcatcggcgggccagccaccaag 61 ||||| ||||||||||||||||||||||||||| |||||||||||||||| | || | | Sbjct: 27096825 ggccacgtcatctccgaccccatcgagctcctcggccgcatcggcgggccggtgacgacg 27096884 Query: 62 gtcctcgccatcttcggtatcaccctcgccatcatcaccaccaacatcgccgccaacgtc 121 || ||||||||| |||| |||| |||||| | |||||| |||||||| ||||||||||| Sbjct: 27096885 gtgctcgccatcgtcggcatcagcctcgcgaccatcacgaccaacattgccgccaacgtg 27096944 Query: 122 gtcgcgccggcgaac 136 || |||||||||||| Sbjct: 27096945 gtggcgccggcgaac 27096959
>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1486_E07 Length = 110494 Score = 218 bits (110), Expect = 1e-53 Identities = 259/306 (84%), Gaps = 2/306 (0%) Strand = Plus / Plus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||||||||||||||| ||||| ||| Sbjct: 68636 ttcacgttcgccaagggggcgctggtcaccgcgttgctcggcatcgccttccagccatgg 68695 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggctgctcggaaacgcggcgctc 283 ||||||||||||||||||||||||||||||| ||| ||||||||||| || |||| ||| Sbjct: 68696 cggctgctcagctccagcgagagcttcgtctacacatggctgctcggctactcggctctc 68755 Query: 284 atggggcctatcggaggcatcgtgctcgcggatcactatatagtgcggcgtactgcgttg 343 ||||| || |||||||| ||| | ||||| || ||||| || || ||||| || ||| || Sbjct: 68756 atgggcccgatcggagggatcatcctcgccgaccactacatcgtccggcgaaccgcgctg 68815 Query: 344 gacgtcgacgcgctttactcggaggaagacgacagcccctactacttccagggcggcttc 403 |||||||||||||| ||||||||||| | || | || ||||| ||||||||||| ||| Sbjct: 68816 gacgtcgacgcgctctactcggaggacagccacgggccttactatttccagggcggtttc 68875 Query: 404 aacgttgctgcgatggtggcgatggcggcaggattcgccgccg-tcgtgccggggttctt 462 ||||| || || |||| |||||||||||| ||| | | ||||| |||||||||| ||| | Sbjct: 68876 aacgtcgccgccatggcggcgatggcggccggagttg-cgccgatcgtgccgggattcct 68934 Query: 463 gcacaa 468 |||||| Sbjct: 68935 gcacaa 68940 Score = 133 bits (67), Expect = 6e-28 Identities = 118/135 (87%) Strand = Plus / Plus Query: 2 ggccaggtcatctccgaccccatcgagctcctcagccgcatcggcgggccagccaccaag 61 ||||| ||||||||||||||||||||||||||| |||||||||||||||| | || | | Sbjct: 68474 ggccacgtcatctccgaccccatcgagctcctcggccgcatcggcgggccggtgacgacg 68533 Query: 62 gtcctcgccatcttcggtatcaccctcgccatcatcaccaccaacatcgccgccaacgtc 121 || ||||||||| |||| |||| |||||| | |||||| |||||||| ||||||||||| Sbjct: 68534 gtgctcgccatcgtcggcatcagcctcgcgaccatcacgaccaacattgccgccaacgtg 68593 Query: 122 gtcgcgccggcgaac 136 || |||||||||||| Sbjct: 68594 gtggcgccggcgaac 68608
>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461B08 Length = 153743 Score = 218 bits (110), Expect = 1e-53 Identities = 259/306 (84%), Gaps = 2/306 (0%) Strand = Plus / Plus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||||||||||||||| ||||| ||| Sbjct: 150189 ttcacgttcgccaagggggcgctggtcaccgcgttgctcggcatcgccttccagccatgg 150248 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggctgctcggaaacgcggcgctc 283 ||||||||||||||||||||||||||||||| ||| ||||||||||| || |||| ||| Sbjct: 150249 cggctgctcagctccagcgagagcttcgtctacacatggctgctcggctactcggctctc 150308 Query: 284 atggggcctatcggaggcatcgtgctcgcggatcactatatagtgcggcgtactgcgttg 343 ||||| || |||||||| ||| | ||||| || ||||| || || ||||| || ||| || Sbjct: 150309 atgggcccgatcggagggatcatcctcgccgaccactacatcgtccggcgaaccgcgctg 150368 Query: 344 gacgtcgacgcgctttactcggaggaagacgacagcccctactacttccagggcggcttc 403 |||||||||||||| ||||||||||| | || | || ||||| ||||||||||| ||| Sbjct: 150369 gacgtcgacgcgctctactcggaggacagccacgggccttactatttccagggcggtttc 150428 Query: 404 aacgttgctgcgatggtggcgatggcggcaggattcgccgccg-tcgtgccggggttctt 462 ||||| || || |||| |||||||||||| ||| | | ||||| |||||||||| ||| | Sbjct: 150429 aacgtcgccgccatggcggcgatggcggccggagttg-cgccgatcgtgccgggattcct 150487 Query: 463 gcacaa 468 |||||| Sbjct: 150488 gcacaa 150493 Score = 133 bits (67), Expect = 6e-28 Identities = 118/135 (87%) Strand = Plus / Plus Query: 2 ggccaggtcatctccgaccccatcgagctcctcagccgcatcggcgggccagccaccaag 61 ||||| ||||||||||||||||||||||||||| |||||||||||||||| | || | | Sbjct: 150027 ggccacgtcatctccgaccccatcgagctcctcggccgcatcggcgggccggtgacgacg 150086 Query: 62 gtcctcgccatcttcggtatcaccctcgccatcatcaccaccaacatcgccgccaacgtc 121 || ||||||||| |||| |||| |||||| | |||||| |||||||| ||||||||||| Sbjct: 150087 gtgctcgccatcgtcggcatcagcctcgcgaccatcacgaccaacattgccgccaacgtg 150146 Query: 122 gtcgcgccggcgaac 136 || |||||||||||| Sbjct: 150147 gtggcgccggcgaac 150161
>dbj|AK106879.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-E09, full insert sequence Length = 1724 Score = 210 bits (106), Expect = 3e-51 Identities = 258/306 (84%), Gaps = 2/306 (0%) Strand = Plus / Plus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||||||||||||||| ||||| ||| Sbjct: 1215 ttcacgttcgccaagggggcgctggtcaccgcgttgctcggcatcgccttccagccatgg 1274 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggctgctcggaaacgcggcgctc 283 |||||||||||| |||||||||||||||||| ||| ||||||||||| || |||| ||| Sbjct: 1275 cggctgctcagccccagcgagagcttcgtctacacatggctgctcggctactcggctctc 1334 Query: 284 atggggcctatcggaggcatcgtgctcgcggatcactatatagtgcggcgtactgcgttg 343 ||||| || |||||||| ||| | ||||| || ||||| || || ||||| || ||| || Sbjct: 1335 atgggcccgatcggagggatcatcctcgccgaccactacatcgtccggcgaaccgcgctg 1394 Query: 344 gacgtcgacgcgctttactcggaggaagacgacagcccctactacttccagggcggcttc 403 |||||||||||||| ||||||||||| | || | || ||||| ||||||||||| ||| Sbjct: 1395 gacgtcgacgcgctctactcggaggacagccacgggccttactatttccagggcggtttc 1454 Query: 404 aacgttgctgcgatggtggcgatggcggcaggattcgccgccg-tcgtgccggggttctt 462 ||||| || || |||| |||||||||||| ||| | | ||||| |||||||||| ||| | Sbjct: 1455 aacgtcgccgccatggcggcgatggcggccggagttg-cgccgatcgtgccgggattcct 1513 Query: 463 gcacaa 468 |||||| Sbjct: 1514 gcacaa 1519 Score = 141 bits (71), Expect = 2e-30 Identities = 119/135 (88%) Strand = Plus / Plus Query: 2 ggccaggtcatctccgaccccatcgagctcctcagccgcatcggcgggccagccaccaag 61 ||||| ||||||||||||||||||||||||||| |||||||||||||||| || || | | Sbjct: 1053 ggccacgtcatctccgaccccatcgagctcctcggccgcatcggcgggccggcgacgacg 1112 Query: 62 gtcctcgccatcttcggtatcaccctcgccatcatcaccaccaacatcgccgccaacgtc 121 || ||||||||| |||| |||| |||||| | |||||| |||||||| ||||||||||| Sbjct: 1113 gtgctcgccatcgtcggcatcagcctcgcgaccatcacgaccaacattgccgccaacgtg 1172 Query: 122 gtcgcgccggcgaac 136 || |||||||||||| Sbjct: 1173 gtggcgccggcgaac 1187
>ref|NM_186558.1| Oryza sativa (japonica cultivar-group), mRNA Length = 441 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||| ||||||||||| ||||| ||| Sbjct: 46 ttcacgttcgccaagggggcgctggtcactgcgttgcttggcatcgccttccagccatgg 105 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggc 263 ||||||||||||||| ||||||||||||||| ||| |||| Sbjct: 106 cggctgctcagctcctgcgagagcttcgtctacacatggc 145
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||| ||||||||||| ||||| ||| Sbjct: 6511648 ttcacgttcgccaagggggcgctggtcactgcgttgcttggcatcgccttccagccatgg 6511589 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggc 263 ||||||||||||||| ||||||||||||||| ||| |||| Sbjct: 6511588 cggctgctcagctcctgcgagagcttcgtctacacatggc 6511549 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 |||||||||||||||| ||||| | ||| ||| |||||||||||||||| ||||| ||| Sbjct: 24345517 ttcacgttcgccaaggtggcgctggtcactgcgttgctcggcatcgccttccagccatgg 24345576 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggc 263 |||||| || ||||||||||||||||| ||| ||| |||| Sbjct: 24345577 cggctgttcggctccagcgagagcttcatctacacatggc 24345616
>dbj|AP005160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0031C24 Length = 194111 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||| ||||||||||| ||||| ||| Sbjct: 23742 ttcacgttcgccaagggggcgctggtcactgcgttgcttggcatcgccttccagccatgg 23683 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggc 263 ||||||||||||||| ||||||||||||||| ||| |||| Sbjct: 23682 cggctgctcagctcctgcgagagcttcgtctacacatggc 23643
>dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1080_F08 Length = 94139 Score = 111 bits (56), Expect = 2e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 ||||||||||||||||| ||||| | ||| ||| |||| ||||||||||| ||||| ||| Sbjct: 68737 ttcacgttcgccaagggggcgctggtcactgcgttgcttggcatcgccttccagccatgg 68678 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggc 263 ||||||||||||||| ||||||||||||||| ||| |||| Sbjct: 68677 cggctgctcagctcctgcgagagcttcgtctacacatggc 68638
>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1579_C03 Length = 122851 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Plus Query: 164 ttcacgttcgccaagggtgcgctcgccacggcgctgctcggcatcgccttgcagccgtgg 223 |||||||||||||||| ||||| | ||| ||| |||||||||||||||| ||||| ||| Sbjct: 78710 ttcacgttcgccaaggtggcgctggtcactgcgttgctcggcatcgccttccagccatgg 78769 Query: 224 cggctgctcagctccagcgagagcttcgtcttcacctggc 263 |||||| || ||||||||||||||||| ||| ||| |||| Sbjct: 78770 cggctgttcggctccagcgagagcttcatctacacatggc 78809
>ref|XM_475645.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 798 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 94 catcaccaccaacatcgccgcca 116 ||||||||||||||||||||||| Sbjct: 54 catcaccaccaacatcgccgcca 32
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 catcaccaccaacatcgccgcca 116 ||||||||||||||||||||||| Sbjct: 78727 catcaccaccaacatcgccgcca 78749
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 94 catcaccaccaacatcgccgcca 116 ||||||||||||||||||||||| Sbjct: 3656380 catcaccaccaacatcgccgcca 3656402
>dbj|AK105598.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A03, full insert sequence Length = 1114 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 94 catcaccaccaacatcgccgcca 116 ||||||||||||||||||||||| Sbjct: 117 catcaccaccaacatcgccgcca 95
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 cggcgctgctcggcatcgcctt 213 |||||||||||||||||||||| Sbjct: 3729075 cggcgctgctcggcatcgcctt 3729096
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 ggcgctgctcggcatcgccttg 214 |||||||||||||||||||||| Sbjct: 323389 ggcgctgctcggcatcgccttg 323410
>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence Length = 95814 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 91 catcatcaccaccaacatcgccgcca 116 |||||||||||||| ||||||||||| Sbjct: 91883 catcatcaccaccatcatcgccgcca 91908
>gb|AC092437.4| Homo sapiens BAC clone RP11-326I19 from 4, complete sequence Length = 203583 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 80 atcaccctcgccatcatcaccaccaacatc 109 ||||||||| ||||||||||||||| |||| Sbjct: 13863 atcaccctcaccatcatcaccaccaccatc 13834
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 387 acttccagggcggcttcaacgt 408 |||||||||||||||||||||| Sbjct: 2647775 acttccagggcggcttcaacgt 2647796
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 182 gcgctcgccacggcgctgctcggcatcgcc 211 |||||||| ||| ||||||||||||||||| Sbjct: 1897717 gcgctcgcgacgtcgctgctcggcatcgcc 1897688
>emb|X73968.1|HSWG0E7RP H.sapiens (clone wg0e7) repeat region DNA Length = 377 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 80 atcaccctcgccatcatcaccaccaacatc 109 |||||| || |||||||||||||||||||| Sbjct: 147 atcaccatcaccatcatcaccaccaacatc 118
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 183 cgctcgccacggcgctgctcggcatcgcc 211 |||||||| || ||||||||||||||||| Sbjct: 1140407 cgctcgccgcgtcgctgctcggcatcgcc 1140379
>ref|XM_362108.1| Magnaporthe grisea 70-15 predicted protein (MG04553.4) partial cds Length = 696 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 88 cgccatcatcaccaccaacatcgccgcca 116 ||||||||||||||||| |||| |||||| Sbjct: 667 cgccatcatcaccaccatcatcaccgcca 639
>gb|AC025778.8| Homo sapiens chromosome 16 clone CTD-2504F3, complete sequence Length = 208417 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 80 atcaccctcgccatcatcaccaccaacatcgccgcca 116 |||||| |||||| ||||||||||| |||| |||||| Sbjct: 183998 atcaccatcgccaccatcaccaccaccatcaccgcca 184034
>gb|AF312031.1| Burkholderia vietnamiensis multi-drug efflux transporter (norM) gene, complete cds Length = 1389 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 183 cgctcgccacggcgctgctcggcatcgcc 211 |||||||| || ||||||||||||||||| Sbjct: 1097 cgctcgccgcgtcgctgctcggcatcgcc 1125
>gb|AC018688.9| Homo sapiens BAC clone RP11-462H3 from UL, complete sequence Length = 170204 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 gccatcatcaccaccaacatc 109 ||||||||||||||||||||| Sbjct: 24141 gccatcatcaccaccaacatc 24121
>gb|DQ127597.1| Emiliania huxleyi virus 163 clone combi101+81.seq partial sequence Length = 1892 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 94 catcaccaccaacatcgccgccaacgtcgtcgc 126 |||| |||||| ||||||||||| ||||||||| Sbjct: 353 catcgccaccaccatcgccgccaccgtcgtcgc 321
>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 8/10 Length = 349136 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cgccatcatcaccaccaacatcgcc 112 ||||| ||||||||||||||||||| Sbjct: 90940 cgccagcatcaccaccaacatcgcc 90916
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 88 cgccatcatcaccaccaacatcgcc 112 ||||| ||||||||||||||||||| Sbjct: 2563765 cgccagcatcaccaccaacatcgcc 2563741
>emb|AL731652.1| Dog DNA sequence from clone RP81-70I6, complete sequence Length = 169460 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 tcaccctcgccatcatcacca 101 ||||||||||||||||||||| Sbjct: 120218 tcaccctcgccatcatcacca 120238
>ref|NM_114364.1| Arabidopsis thaliana unknown protein AT3G44950 mRNA, complete cds Length = 219 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 cgccatcatcaccaccaacatcgccgcc 115 ||||||||||||||||| || ||||||| Sbjct: 166 cgccatcatcaccaccaccaccgccgcc 139
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 184 gctcgccacggcgctgctcggcatcgcc 211 |||||| ||| ||||||||||||||||| Sbjct: 530096 gctcgcgacgtcgctgctcggcatcgcc 530069
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 179 ggtgcgctcgccacggcgctgctcggca 206 |||||||||||| |||||||||||||| Sbjct: 2563878 ggtgcgctcgccctggcgctgctcggca 2563851
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 gcgatggtggcgatggcggc 432 |||||||||||||||||||| Sbjct: 110865 gcgatggtggcgatggcggc 110884
>ref|XM_959135.1| Neurospora crassa OR74A hypothetical protein (NCU01944.1) partial mRNA Length = 1824 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 ccttgcagccgtggcggctgctca 233 |||||||||| ||||||||||||| Sbjct: 798 ccttgcagccttggcggctgctca 821
>ref|XM_329133.1| Neurospora crassa OR74A hypothetical protein (NCU01944.1) partial mRNA Length = 1824 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 ccttgcagccgtggcggctgctca 233 |||||||||| ||||||||||||| Sbjct: 798 ccttgcagccttggcggctgctca 821
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 gctcgccacggcgctgctcggcatcgcc 211 |||||| ||| ||||||||||||||||| Sbjct: 3244982 gctcgcgacgtcgctgctcggcatcgcc 3245009
>ref|XM_755836.1| Ustilago maydis 521 hypothetical protein (UM04782.1) partial mRNA Length = 2529 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ccatcatcaccaccaacatc 109 |||||||||||||||||||| Sbjct: 2462 ccatcatcaccaccaacatc 2481
>ref|XM_747832.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g15580) partial mRNA Length = 819 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 ctgcgatggtggcgatggcg 430 |||||||||||||||||||| Sbjct: 485 ctgcgatggtggcgatggcg 504
>gb|AC079316.15| Homo sapiens 12 BAC RP11-43D4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178905 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccatcatcaccaccaacatc 109 |||||||||||||||||||| Sbjct: 174684 ccatcatcaccaccaacatc 174665
>emb|CR729658.2|CNS0GPY8 Tetraodon nigroviridis full-length cDNA Length = 1152 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 gcgatggtggcgatggcggc 432 |||||||||||||||||||| Sbjct: 368 gcgatggtggcgatggcggc 387
>emb|Z47726.1|DMDRPB6 D.melanogaster mRNA for RNA polymerase subunit Length = 534 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 catcgccgccaacgtcgtcg 125 |||||||||||||||||||| Sbjct: 128 catcgccgccaacgtcgtcg 109
>emb|Y10438.1|SPFKBAD Streptomyces sp. MA6548 fkbA gene and partial fkbD gene encoding FK506 polyketide synthase and cytochrome P-450-9-deoxo-FK506 hydroxylase, respectively Length = 19791 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cggcgctgctcggcatcgcc 211 |||||||||||||||||||| Sbjct: 18956 cggcgctgctcggcatcgcc 18975
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 184 gctcgccacggcgctgctcggcatcgcc 211 |||||| ||| ||||||||||||||||| Sbjct: 2974805 gctcgcgacgtcgctgctcggcatcgcc 2974832
>emb|AL353992.1|ATF14D17 Arabidopsis thaliana DNA chromosome 3, BAC clone F14D17 Length = 89214 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 88 cgccatcatcaccaccaacatcgccgcc 115 ||||||||||||||||| || ||||||| Sbjct: 12948 cgccatcatcaccaccaccaccgccgcc 12921
>ref|NM_080171.2| Drosophila melanogaster RNA polymerase II 18kD subunit CG1163-RA (RpII18), mRNA Length = 544 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 catcgccgccaacgtcgtcg 125 |||||||||||||||||||| Sbjct: 132 catcgccgccaacgtcgtcg 113
>gb|DQ387872.1| Neurospora crassa strain Adiopodoume-1 Srp interval sequence Length = 33499 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 210 ccttgcagccgtggcggctgctca 233 |||||||||| ||||||||||||| Sbjct: 12178 ccttgcagccttggcggctgctca 12201
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 tcgccatcttcggtatcaccctcg 89 ||||||||||||||||||| |||| Sbjct: 1848091 tcgccatcttcggtatcacactcg 1848114
>gb|AC018377.6|AC018377 Homo sapiens, clone RP11-4C16, complete sequence Length = 163644 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gccatcatcaccaccaacat 108 |||||||||||||||||||| Sbjct: 102554 gccatcatcaccaccaacat 102535
>gb|AC155949.8| Mus musculus 6 BAC RP24-407P20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179931 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 ccatcatcaccaccaacatc 109 |||||||||||||||||||| Sbjct: 70410 ccatcatcaccaccaacatc 70429
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gctcgccacggcgctgctcg 203 |||||||||||||||||||| Sbjct: 10883139 gctcgccacggcgctgctcg 10883158
>gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, complete sequence Length = 169166 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gatggtggcgatggcggcag 434 |||||||||||||||||||| Sbjct: 24864 gatggtggcgatggcggcag 24845
>gb|AF521895.1|AF521896S2 Streptomyces hygroscopicus ansamycin biosynthesis gene cluster, partial sequence Length = 12420 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 cggcgctgctcggcatcgcc 211 |||||||||||||||||||| Sbjct: 1446 cggcgctgctcggcatcgcc 1427
>gb|AE004708.1| Pseudomonas aeruginosa PAO1, section 269 of 529 of the complete genome Length = 12542 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 gcgctcgccacggcgctgctcggc 205 ||||| |||||||||||||||||| Sbjct: 2347 gcgctggccacggcgctgctcggc 2370
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 caccaacatcgccgccaacg 119 |||||||||||||||||||| Sbjct: 2385288 caccaacatcgccgccaacg 2385269
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 cttccagggcggcttcaacg 407 |||||||||||||||||||| Sbjct: 1421332 cttccagggcggcttcaacg 1421351
>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0055N24 Length = 142702 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 gctcgccacggcgctgctcg 203 |||||||||||||||||||| Sbjct: 109505 gctcgccacggcgctgctcg 109524
>gb|AC020663.1|AC020663 Homo sapiens chromosome 16 clone RPCI-11_127I20, complete sequence Length = 154218 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gatggtggcgatggcggcag 434 |||||||||||||||||||| Sbjct: 125044 gatggtggcgatggcggcag 125025
>gb|BT001786.1| Drosophila melanogaster RH21608 full insert cDNA Length = 553 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 catcgccgccaacgtcgtcg 125 |||||||||||||||||||| Sbjct: 131 catcgccgccaacgtcgtcg 112
>gb|AC152721.3| Mus musculus BAC clone RP23-425F13 from chromosome 5, complete sequence Length = 221637 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 ccatcatcaccaccaacatc 109 |||||||||||||||||||| Sbjct: 146164 ccatcatcaccaccaacatc 146145
>gb|AC174763.1| Gasterosteus aculeatus clone VMRC28-119C03, complete sequence Length = 138567 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 91 catcatcaccaccaacatcgccgc 114 |||||||||||||| ||||||||| Sbjct: 91252 catcatcaccaccatcatcgccgc 91275
>gb|AF037441.1|AF037441 Edwardsiella ictaluri putative 18.8 kDa protein (eip19), putative 17.8 kDa protein (eip18), putative 54.5 kDa protein (eip55), and putative 19.5 kDa protein (eip20) genes, complete cds Length = 5727 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 tgcgatggtggcgatggcgg 431 |||||||||||||||||||| Sbjct: 1076 tgcgatggtggcgatggcgg 1095
>gb|AF440523.1| Pseudomonas aeruginosa strain C genomic sequence, gene island PAGI-2(C) Length = 158230 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 gcgctcgccacggcgctgctcggc 205 ||||| |||||||||||||||||| Sbjct: 146855 gcgctggccacggcgctgctcggc 146832
>emb|AL356456.1|LMFLUNK01 Leishmania major Friedlin cosmid clones L9127,L3286,L3175,L8286,L7480, incomplete shotgun, assembled reads, with VERY preliminary annotation, complete sequence Length = 139597 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 cgagctcctcagccgcatcg 44 |||||||||||||||||||| Sbjct: 87007 cgagctcctcagccgcatcg 87026 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,656,203 Number of Sequences: 3902068 Number of extensions: 2656203 Number of successful extensions: 68668 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66732 Number of HSP's gapped (non-prelim): 1932 length of query: 480 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 458 effective length of database: 17,147,199,772 effective search space: 7853417495576 effective search space used: 7853417495576 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
