ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal39k05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZP3R_RAT (Q7TSY4) Zona pellucida sperm-binding protein 3 recepto... 32 1.3
2PURL_GLOVI (Q7NIR9) Phosphoribosylformylglycinamidine synthase I... 30 6.7
3ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ... 30 8.7
4NR1I3_PHOSI (P62045) Orphan nuclear receptor NR1I3 (Constitutive... 30 8.7
5DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphat... 30 8.7
6SPAG4_RAT (O55034) Sperm-associated antigen 4 protein (Outer den... 30 8.7

>ZP3R_RAT (Q7TSY4) Zona pellucida sperm-binding protein 3 receptor precursor|
           (Sperm fertilization protein 56) (sp56)
          Length = 577

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 14/142 (9%)
 Frame = +2

Query: 170 SSCGAPGMQ----LSCSGDDTILDHPVLGSCKVTEIYYRHCVINLTPLVEPSTQ------ 319
           SSC A G       SC  D ++ +H  L    ++E      V N T L+E          
Sbjct: 395 SSCQADGKWDPAIPSCEADPSLQNHFALTFPNISETN----VTNRTYLLENENATESFIK 450

Query: 320 --CPLQKLISANLATGVYKLPPSQTTLVRCSSEFIPADPYSVAGPA--ACLSNNATQFWY 487
             CP  ++I+ NL+         +   ++C S       Y + G +   CL N     WY
Sbjct: 451 AVCPKPEIINGNLSVEKEIYAEMENITIQCDSG------YDLVGSSNIICLENRT---WY 501

Query: 488 LAESADAYIYDLPRDCEAVSRG 553
                   I + P DCE V++G
Sbjct: 502 --PDIPFCIMEGPEDCEIVNKG 521



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>PURL_GLOVI (Q7NIR9) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 774

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +2

Query: 218 TILDHPVLGSCKVTEIYYRHCVINLTPLVEPSTQCPLQKLISANLATGVYKLPP----SQ 385
           T+LD P +GS       Y H V N T +V  +    + ++   +   G  +  P      
Sbjct: 413 TLLDSPTIGSKSWVYRQYDHQVQNNTVIVPGAADAAVIRVRPQSFGPGEVEAVPFTERGI 472

Query: 386 TTLVRCSSEFIPADPY 433
              V C+S ++  DPY
Sbjct: 473 AATVDCNSRYVYLDPY 488



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>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +2

Query: 236 VLGSCKVTEIYYRHCVINLTPLVEPSTQCPLQKLISANLATGVYKLPPSQTTLVRCSSEF 415
           +LG    T    +H  +  +PL  PST  P     + +L     KLPP Q +   C+   
Sbjct: 493 ILGPTACTGESEKHLELLASPLPIPSTFLPHSSTPALHLTVQRLKLPPPQGSSESCTVN- 551

Query: 416 IPADP---YSVAGP 448
           IP  P    S+A P
Sbjct: 552 IPQQPPGSLSIASP 565



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>NR1I3_PHOSI (P62045) Orphan nuclear receptor NR1I3 (Constitutive androstane|
           receptor) (CAR)
          Length = 348

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
 Frame = +2

Query: 152 GLSTHTSSC-GAPGMQLSCSGDDTILDHPVLGSCKVTEIYYRHCVINLTPLVEPSTQCPL 328
           G   H  +C G  G        +T L  P  GSCKV +   RHC             C L
Sbjct: 20  GYHFHALTCEGCKGFFRRTVSKNTGLTCPFAGSCKVNKAQRRHC-----------PACRL 68

Query: 329 QKLISANL 352
           QK + A +
Sbjct: 69  QKCLDAGM 76



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>DDEF1_HUMAN (Q9ULH1) 130-kDa phosphatidylinositol 4,5-biphosphate-dependent|
           ARF1 GTPase-activating protein (PIP2-dependent ARF1 GAP)
           (ADP-ribosylation factor-directed GTPase-activating
           protein 1) (ARF GTPase-activating protein 1)
           (Development and differe
          Length = 956

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -1

Query: 531 SRGRSYMYASADSAKYQNWVALLLRQAAGPATL----YGSAGMNSLEQRTRVVCD 379
           S  R+Y + + D   Y  W+++L        T+      SAG NSLE  T+ + +
Sbjct: 216 SHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMAFRGEQSAGENSLEDLTKAIIE 270



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>SPAG4_RAT (O55034) Sperm-associated antigen 4 protein (Outer dense|
           fiber-associated protein SPAG4)
          Length = 444

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +2

Query: 65  SATSDDEDFSKQCPSHRCSKHGPEIRFPFGLSTHTSSCGAPGMQLSCSGDDT 220
           SATS D +  +          GPE+  P G     SSCG P +     G DT
Sbjct: 30  SATSGDSNGRRSA--------GPELGEPDGRMARGSSCGEPALSSGVPGGDT 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,254,897
Number of Sequences: 219361
Number of extensions: 2326702
Number of successful extensions: 5818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5816
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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