No.
Definition
Score (bits)
E Value
1 ref|XM_469328.1| Oryza sativa (japonica cultivar-group), mRNA
644
0.0
2 dbj|AK100086.1| Oryza sativa (japonica cultivar-group) cDNA clon...
644
0.0
3 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
127
5e-26
4 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
127
5e-26
5 gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E...
127
5e-26
6 ref|NM_122188.2| Arabidopsis thaliana GMN10 AT5G22830 (GMN10) mR...
54
6e-04
7 gb|AF322255.1|AF322255 Arabidopsis thaliana magnesium transporte...
54
6e-04
8 dbj|AB005243.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
54
6e-04
9 emb|BX831579.1|CNS09ZTT Arabidopsis thaliana Full-length cDNA Co...
52
0.002
10 emb|BX815432.1|CNS0ABBE Arabidopsis thaliana Full-length cDNA Co...
48
0.036
11 gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...
42
2.2
12 emb|AL353736.11| Human DNA sequence from clone RP11-412P1 on chr...
42
2.2
13 ref|XM_417195.1| PREDICTED: Gallus gallus similar to hypothetica...
40
8.9
14 gb|AE013116.1| Thermoanaerobacter tengcongensis MB4, section 143...
40
8.9
15 gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, compl...
40
8.9
16 gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, com...
40
8.9
17 emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macroph...
40
8.9
18 emb|BX935153.1| Gallus gallus finished cDNA, clone ChEST535d16
40
8.9
19 emb|BX931867.1| Gallus gallus finished cDNA, clone ChEST795o24
40
8.9
20 emb|BX930440.1| Gallus gallus finished cDNA, clone ChEST635j1
40
8.9
21 emb|BX682229.4| Mouse DNA sequence from clone RP24-531M17 on chr...
40
8.9
22 emb|AL772306.10| Mouse DNA sequence from clone RP23-89L15 on chr...
40
8.9
23 gb|AC154673.2| Mus musculus BAC clone RP24-298M20 from chromosom...
40
8.9
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 127 bits (64), Expect = 5e-26
Identities = 94/104 (90%)
Strand = Plus / Plus
Query: 519 gagctgggttcacgagcaggtgatcttaaacaaatgctcatcgatctcctagaagacccc 578
|||||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||
Sbjct: 27000410 gagctgggttcacgagcaggtgatctcaaacaaatgcttattgatctcctagatgatcct 27000469
Query: 579 catgaaattcgtcgaatatgcattatggggagaaattgtacgct 622
|||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct: 27000470 catgaaatccgtcgaatatgcataatgggaagaaattgcacgct 27000513
Score = 117 bits (59), Expect = 5e-23
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 435 gtggctgcattgcttgaagttctaccaaatcggctgacaggtgatgttttggagcagctt 494
|||| ||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 27000250 gtgggtgctttgcttgaagttctaccaaatcggttgacagctgatgtgttggagcagctt 27000309
Query: 495 cgtctaagcaaacaatcattggt 517
||||||||||||||| |||||||
Sbjct: 27000310 cgtctaagcaaacaagcattggt 27000332
Score = 93.7 bits (47), Expect = 7e-16
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 192 cgtgagcaggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgt 251
||||| || ||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct: 26998728 cgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgc 26998787
Query: 252 gtccttatattcaattataacag 274
|| |||||||||||||| |||||
Sbjct: 26998788 gttcttatattcaattacaacag 26998810
Score = 85.7 bits (43), Expect = 2e-13
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 117 ggcctccgtctacgagatacacgaagcgtcgacccatcactatggctaatgaactcaatg 176
|||||||| ||||||||||| ||||||| |||||||| |||||||||||||| ||||||
Sbjct: 26998118 ggcctccgcctacgagataccagaagcgttgacccatcgctatggctaatgaattcaatg 26998177
Query: 177 ccttccctgctggta 191
|| ||| ||||||||
Sbjct: 26998178 ccatccttgctggta 26998192
Score = 77.8 bits (39), Expect = 4e-11
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 273 agcccaggaggaaaggcctttttagagctattacgaccccggttaaatccaaggaacatc 332
|||||||||||||||||||| ||||| ||||| || |||||||||||||| || |||
Sbjct: 26998909 agcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatc 26998968
Query: 333 aatggtgggcctgcgatgccttttcaactcgaggt 367
|||||||| || || ||||| |||||||| |||||
Sbjct: 26998969 aatggtggaccagcaatgccatttcaacttgaggt 26999003
Score = 73.8 bits (37), Expect = 6e-10
Identities = 44/45 (97%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 2 gccgactacatctcgctcggcatcagggnagcccgtctacgaggt 46
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 26997056 gccgactacatctcgctcggcatcaggg-agcccgtctacgaggt 26997099
Score = 60.0 bits (30), Expect = 1e-05
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 364 aggttgttgaagcagcactgctttctagaatacaaaggctggaacaaagattaatgcatg 423
||||||| ||||| || ||||||||||||||||||||| |||| | ||| |||||| |
Sbjct: 26999448 aggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgta 26999507
Query: 424 tcgaacctcgtgtg 437
|||| |||||||||
Sbjct: 26999508 tcgagcctcgtgtg 26999521
Score = 58.0 bits (29), Expect = 4e-05
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 43 aggtggtagaagtgaaagccaatggaagcgtgtctaccgaaaaaataagccgccggcagc 102
||||| ||||||| ||| | ||||| || |||||||| ||||||||||||| ||||||
Sbjct: 26997843 aggtgatagaagtaaaatctaatgggaggatgtctaccaaaaaaataagccggaggcagc 26997902
Query: 103 tactgaaatcaag 115
|| ||||||||||
Sbjct: 26997903 tattgaaatcaag 26997915
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 127 bits (64), Expect = 5e-26
Identities = 94/104 (90%)
Strand = Plus / Plus
Query: 519 gagctgggttcacgagcaggtgatcttaaacaaatgctcatcgatctcctagaagacccc 578
|||||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||
Sbjct: 27091733 gagctgggttcacgagcaggtgatctcaaacaaatgcttattgatctcctagatgatcct 27091792
Query: 579 catgaaattcgtcgaatatgcattatggggagaaattgtacgct 622
|||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct: 27091793 catgaaatccgtcgaatatgcataatgggaagaaattgcacgct 27091836
Score = 117 bits (59), Expect = 5e-23
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 435 gtggctgcattgcttgaagttctaccaaatcggctgacaggtgatgttttggagcagctt 494
|||| ||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 27091573 gtgggtgctttgcttgaagttctaccaaatcggttgacagctgatgtgttggagcagctt 27091632
Query: 495 cgtctaagcaaacaatcattggt 517
||||||||||||||| |||||||
Sbjct: 27091633 cgtctaagcaaacaagcattggt 27091655
Score = 93.7 bits (47), Expect = 7e-16
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 192 cgtgagcaggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgt 251
||||| || ||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct: 27090051 cgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgc 27090110
Query: 252 gtccttatattcaattataacag 274
|| |||||||||||||| |||||
Sbjct: 27090111 gttcttatattcaattacaacag 27090133
Score = 85.7 bits (43), Expect = 2e-13
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 117 ggcctccgtctacgagatacacgaagcgtcgacccatcactatggctaatgaactcaatg 176
|||||||| ||||||||||| ||||||| |||||||| |||||||||||||| ||||||
Sbjct: 27089441 ggcctccgcctacgagataccagaagcgttgacccatcgctatggctaatgaattcaatg 27089500
Query: 177 ccttccctgctggta 191
|| ||| ||||||||
Sbjct: 27089501 ccatccttgctggta 27089515
Score = 77.8 bits (39), Expect = 4e-11
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 273 agcccaggaggaaaggcctttttagagctattacgaccccggttaaatccaaggaacatc 332
|||||||||||||||||||| ||||| ||||| || |||||||||||||| || |||
Sbjct: 27090232 agcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatc 27090291
Query: 333 aatggtgggcctgcgatgccttttcaactcgaggt 367
|||||||| || || ||||| |||||||| |||||
Sbjct: 27090292 aatggtggaccagcaatgccatttcaacttgaggt 27090326
Score = 73.8 bits (37), Expect = 6e-10
Identities = 44/45 (97%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 2 gccgactacatctcgctcggcatcagggnagcccgtctacgaggt 46
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 27088379 gccgactacatctcgctcggcatcaggg-agcccgtctacgaggt 27088422
Score = 60.0 bits (30), Expect = 1e-05
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 364 aggttgttgaagcagcactgctttctagaatacaaaggctggaacaaagattaatgcatg 423
||||||| ||||| || ||||||||||||||||||||| |||| | ||| |||||| |
Sbjct: 27090771 aggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgta 27090830
Query: 424 tcgaacctcgtgtg 437
|||| |||||||||
Sbjct: 27090831 tcgagcctcgtgtg 27090844
Score = 58.0 bits (29), Expect = 4e-05
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 43 aggtggtagaagtgaaagccaatggaagcgtgtctaccgaaaaaataagccgccggcagc 102
||||| ||||||| ||| | ||||| || |||||||| ||||||||||||| ||||||
Sbjct: 27089166 aggtgatagaagtaaaatctaatgggaggatgtctaccaaaaaaataagccggaggcagc 27089225
Query: 103 tactgaaatcaag 115
|| ||||||||||
Sbjct: 27089226 tattgaaatcaag 27089238
>gb|AC087851.4 |AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete
sequence
Length = 111882
Score = 127 bits (64), Expect = 5e-26
Identities = 94/104 (90%)
Strand = Plus / Minus
Query: 519 gagctgggttcacgagcaggtgatcttaaacaaatgctcatcgatctcctagaagacccc 578
|||||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||
Sbjct: 58989 gagctgggttcacgagcaggtgatctcaaacaaatgcttattgatctcctagatgatcct 58930
Query: 579 catgaaattcgtcgaatatgcattatggggagaaattgtacgct 622
|||||||| |||||||||||||| ||||| |||||||| |||||
Sbjct: 58929 catgaaatccgtcgaatatgcataatgggaagaaattgcacgct 58886
Score = 117 bits (59), Expect = 5e-23
Identities = 77/83 (92%)
Strand = Plus / Minus
Query: 435 gtggctgcattgcttgaagttctaccaaatcggctgacaggtgatgttttggagcagctt 494
|||| ||| |||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct: 59149 gtgggtgctttgcttgaagttctaccaaatcggttgacagctgatgtgttggagcagctt 59090
Query: 495 cgtctaagcaaacaatcattggt 517
||||||||||||||| |||||||
Sbjct: 59089 cgtctaagcaaacaagcattggt 59067
Score = 93.7 bits (47), Expect = 7e-16
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 192 cgtgagcaggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgt 251
||||| || ||||||||| | || |||||||||||||||||||||||||||||||| ||
Sbjct: 60671 cgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgc 60612
Query: 252 gtccttatattcaattataacag 274
|| |||||||||||||| |||||
Sbjct: 60611 gttcttatattcaattacaacag 60589
Score = 85.7 bits (43), Expect = 2e-13
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 117 ggcctccgtctacgagatacacgaagcgtcgacccatcactatggctaatgaactcaatg 176
|||||||| ||||||||||| ||||||| |||||||| |||||||||||||| ||||||
Sbjct: 61281 ggcctccgcctacgagataccagaagcgttgacccatcgctatggctaatgaattcaatg 61222
Query: 177 ccttccctgctggta 191
|| ||| ||||||||
Sbjct: 61221 ccatccttgctggta 61207
Score = 77.8 bits (39), Expect = 4e-11
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 273 agcccaggaggaaaggcctttttagagctattacgaccccggttaaatccaaggaacatc 332
|||||||||||||||||||| ||||| ||||| || |||||||||||||| || |||
Sbjct: 60490 agcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatc 60431
Query: 333 aatggtgggcctgcgatgccttttcaactcgaggt 367
|||||||| || || ||||| |||||||| |||||
Sbjct: 60430 aatggtggaccagcaatgccatttcaacttgaggt 60396
Score = 73.8 bits (37), Expect = 6e-10
Identities = 44/45 (97%), Gaps = 1/45 (2%)
Strand = Plus / Minus
Query: 2 gccgactacatctcgctcggcatcagggnagcccgtctacgaggt 46
|||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 62343 gccgactacatctcgctcggcatcaggg-agcccgtctacgaggt 62300
Score = 60.0 bits (30), Expect = 1e-05
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 364 aggttgttgaagcagcactgctttctagaatacaaaggctggaacaaagattaatgcatg 423
||||||| ||||| || ||||||||||||||||||||| |||| | ||| |||||| |
Sbjct: 59951 aggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgta 59892
Query: 424 tcgaacctcgtgtg 437
|||| |||||||||
Sbjct: 59891 tcgagcctcgtgtg 59878
Score = 58.0 bits (29), Expect = 4e-05
Identities = 62/73 (84%)
Strand = Plus / Minus
Query: 43 aggtggtagaagtgaaagccaatggaagcgtgtctaccgaaaaaataagccgccggcagc 102
||||| ||||||| ||| | ||||| || |||||||| ||||||||||||| ||||||
Sbjct: 61556 aggtgatagaagtaaaatctaatgggaggatgtctaccaaaaaaataagccggaggcagc 61497
Query: 103 tactgaaatcaag 115
|| ||||||||||
Sbjct: 61496 tattgaaatcaag 61484
>gb|AC154673.2 | Mus musculus BAC clone RP24-298M20 from chromosome 17, complete
sequence
Length = 157621
Score = 40.1 bits (20), Expect = 8.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 369 gttgaagcagcactgctttctaga 392
|||||| |||||||||||||||||
Sbjct: 48553 gttgaaccagcactgctttctaga 48576
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,725,350
Number of Sequences: 3902068
Number of extensions: 4725350
Number of successful extensions: 76568
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76455
Number of HSP's gapped (non-prelim): 108
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)