ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39g22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 135 bits (68), Expect = 2e-28 Identities = 125/144 (86%) Strand = Plus / Minus Query: 131 ggtggtggcgatggcggacatcctgggggacttcggggcgcgggacccgttcccggagga 190 ||||||||| ||||| ||| | ||||| ||||| || ||||| ||||| ||||||||||| Sbjct: 6238 ggtggtggccatggccgacctgctgggcgactttggcgcgcgcgaccccttcccggagga 6179 Query: 191 gatcgcgagcaacttcggggagaagacgctgggcaacgtggacacgctgcaccgcatcct 250 ||||| |||||||||||| |||| | |||||||||||| ||||| || ||| |||||| Sbjct: 6178 gatcgagagcaacttcggcgagagggtgctgggcaacgtcgacaccctccacaacatcct 6119 Query: 251 catccccacgctctccgtgctctc 274 |||||||||||||||||||||||| Sbjct: 6118 catccccacgctctccgtgctctc 6095 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 406 agtgcgtctggaaggtccgggaccaggcctgcggcgacgagctcgtcgccaggatcaac 464 ||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| Sbjct: 5975 agtgcgtctggaaggtcagggacgaagcctgcggccacgagctcgtcgccaggatcaac 5917 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 caaggtggtcggctggcgcctcctc 368 ||||||||| ||||||||||||||| Sbjct: 6025 caaggtggttggctggcgcctcctc 6001 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 34 tccccgtcgccggcaagccctccgccgccgcc 65 |||||| ||||||| || |||||||||||||| Sbjct: 14021983 tccccgccgccggcgagtcctccgccgccgcc 14021952
>gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0079B22, from chromosome 3, complete sequence Length = 125217 Score = 135 bits (68), Expect = 2e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 131 ggtggtggcgatggcggacatcctgggggacttcggggcgcgggacccgttcccggagga 190 ||||||||| ||||| ||| | ||||| ||||| || ||||| ||||| ||||||||||| Sbjct: 118980 ggtggtggccatggccgacctgctgggcgactttggcgcgcgcgaccccttcccggagga 119039 Query: 191 gatcgcgagcaacttcggggagaagacgctgggcaacgtggacacgctgcaccgcatcct 250 ||||| |||||||||||| |||| | |||||||||||| ||||| || ||| |||||| Sbjct: 119040 gatcgagagcaacttcggcgagagggtgctgggcaacgtcgacaccctccacaacatcct 119099 Query: 251 catccccacgctctccgtgctctc 274 |||||||||||||||||||||||| Sbjct: 119100 catccccacgctctccgtgctctc 119123 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 406 agtgcgtctggaaggtccgggaccaggcctgcggcgacgagctcgtcgccaggatcaac 464 ||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| Sbjct: 119243 agtgcgtctggaaggtcagggacgaagcctgcggccacgagctcgtcgccaggatcaac 119301 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 344 caaggtggtcggctggcgcctcctc 368 ||||||||| ||||||||||||||| Sbjct: 119193 caaggtggttggctggcgcctcctc 119217
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 135 bits (68), Expect = 2e-28 Identities = 125/144 (86%) Strand = Plus / Minus Query: 131 ggtggtggcgatggcggacatcctgggggacttcggggcgcgggacccgttcccggagga 190 ||||||||| ||||| ||| | ||||| ||||| || ||||| ||||| ||||||||||| Sbjct: 6238 ggtggtggccatggccgacctgctgggcgactttggcgcgcgcgaccccttcccggagga 6179 Query: 191 gatcgcgagcaacttcggggagaagacgctgggcaacgtggacacgctgcaccgcatcct 250 ||||| |||||||||||| |||| | |||||||||||| ||||| || ||| |||||| Sbjct: 6178 gatcgagagcaacttcggcgagagggtgctgggcaacgtcgacaccctccacaacatcct 6119 Query: 251 catccccacgctctccgtgctctc 274 |||||||||||||||||||||||| Sbjct: 6118 catccccacgctctccgtgctctc 6095 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Minus Query: 406 agtgcgtctggaaggtccgggaccaggcctgcggcgacgagctcgtcgccaggatcaac 464 ||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| Sbjct: 5975 agtgcgtctggaaggtcagggacgaagcctgcggccacgagctcgtcgccaggatcaac 5917 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 344 caaggtggtcggctggcgcctcctc 368 ||||||||| ||||||||||||||| Sbjct: 6025 caaggtggttggctggcgcctcctc 6001 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 34 tccccgtcgccggcaagccctccgccgccgcc 65 |||||| ||||||| || |||||||||||||| Sbjct: 14016958 tccccgccgccggcgagtcctccgccgccgcc 14016927
>dbj|AK104982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-G06, full insert sequence Length = 879 Score = 135 bits (68), Expect = 2e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 131 ggtggtggcgatggcggacatcctgggggacttcggggcgcgggacccgttcccggagga 190 ||||||||| ||||| ||| | ||||| ||||| || ||||| ||||| ||||||||||| Sbjct: 167 ggtggtggccatggccgacctgctgggcgactttggcgcgcgcgaccccttcccggagga 226 Query: 191 gatcgcgagcaacttcggggagaagacgctgggcaacgtggacacgctgcaccgcatcct 250 ||||| |||||||||||| |||| | |||||||||||| ||||| || ||| |||||| Sbjct: 227 gatcgagagcaacttcggcgagagggtgctgggcaacgtcgacaccctccacaacatcct 286 Query: 251 catccccacgctctccgtgctctc 274 |||||||||||||||||||||||| Sbjct: 287 catccccacgctctccgtgctctc 310 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 406 agtgcgtctggaaggtccgggaccaggcctgcggcgacgagctcgtcgccaggatcaac 464 ||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| Sbjct: 430 agtgcgtctggaaggtcagggacgaagcctgcggccacgagctcgtcgccaggatcaac 488 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 344 caaggtggtcggctggcgcctcctc 368 ||||||||| ||||||||||||||| Sbjct: 380 caaggtggttggctggcgcctcctc 404
>dbj|AK072547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131F13, full insert sequence Length = 883 Score = 135 bits (68), Expect = 2e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 131 ggtggtggcgatggcggacatcctgggggacttcggggcgcgggacccgttcccggagga 190 ||||||||| ||||| ||| | ||||| ||||| || ||||| ||||| ||||||||||| Sbjct: 171 ggtggtggccatggccgacctgctgggcgactttggcgcgcgcgaccccttcccggagga 230 Query: 191 gatcgcgagcaacttcggggagaagacgctgggcaacgtggacacgctgcaccgcatcct 250 ||||| |||||||||||| |||| | |||||||||||| ||||| || ||| |||||| Sbjct: 231 gatcgagagcaacttcggcgagagggtgctgggcaacgtcgacaccctccacaacatcct 290 Query: 251 catccccacgctctccgtgctctc 274 |||||||||||||||||||||||| Sbjct: 291 catccccacgctctccgtgctctc 314 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 406 agtgcgtctggaaggtccgggaccaggcctgcggcgacgagctcgtcgccaggatcaac 464 ||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| Sbjct: 434 agtgcgtctggaaggtcagggacgaagcctgcggccacgagctcgtcgccaggatcaac 492 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 344 caaggtggtcggctggcgcctcctc 368 ||||||||| ||||||||||||||| Sbjct: 384 caaggtggttggctggcgcctcctc 408
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 968975 catcgccgccaggatcgaccag 968954
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 42 gccggcaagccctccgccgccg 63 |||||||||||||||||||||| Sbjct: 2502061 gccggcaagccctccgccgccg 2502082
>ref|XM_464477.1| Oryza sativa (japonica cultivar-group), mRNA Length = 186 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 caaggccctcgacggcgccggc 485 |||||||||||||||||||||| Sbjct: 147 caaggccctcgacggcgccggc 168
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 42 gccggcaagccctccgccgccg 63 |||||||||||||||||||||| Sbjct: 2502922 gccggcaagccctccgccgccg 2502943
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 1034712 catcgccgccaggatcgaccag 1034691
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 988257 catcgccgccaggatcgaccag 988236
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 982975 catcgccgccaggatcgaccag 982954
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 984174 catcgccgccaggatcgaccag 984153
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 caaggccctcgacggcgccggc 485 |||||||||||||||||||||| Sbjct: 5464073 caaggccctcgacggcgccggc 5464052 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 30289812 aggccctcgacggcgccggcc 30289792 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 gccggcaagccctccgccgccgcc 65 |||||||||||| ||||||||||| Sbjct: 22903366 gccggcaagcccgccgccgccgcc 22903343
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 972944 catcgccgccaggatcgaccag 972923
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1524_D08 Length = 143046 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 caaggccctcgacggcgccggc 485 |||||||||||||||||||||| Sbjct: 117654 caaggccctcgacggcgccggc 117633
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 caaggccctcgacggcgccggc 485 |||||||||||||||||||||| Sbjct: 8808 caaggccctcgacggcgccggc 8787
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 1202617 catcgccgccaggatcgaccag 1202596
>emb|CT033245.1| Platynereis dumerilii EST IB0AAA24BC05EM1 Length = 916 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 322 aggacgcccgcaggctgctctt 343 |||||||||||||||||||||| Sbjct: 879 aggacgcccgcaggctgctctt 900
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 1113394 catcgccgccaggatcgaccag 1113373
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 2118738 catcgccgccaggatcgaccag 2118759
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 2201922 catcgccgccaggatcgaccag 2201901
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 581 catcgccgccaggatcgaccag 602 |||||||||||||||||||||| Sbjct: 1000897 catcgccgccaggatcgaccag 1000876
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 560 gctgagcgccaacgacttcatcatc 584 |||||||| |||||||||||||||| Sbjct: 2384369 gctgagcgtcaacgacttcatcatc 2384393
>ref|XM_467581.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3450 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 2870 aggccctcgacggcgccggcc 2850
>ref|XM_506951.1| PREDICTED Oryza sativa (japonica cultivar-group), B1121A12.27 mRNA Length = 4024 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 3501 aggccctcgacggcgccggcc 3481
>ref|XM_467582.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1748 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 366 aggccctcgacggcgccggcc 386
>gb|AC148650.1| Pan troglodytes chromosome X clone PTB-044F10 map human ortholog q28, complete sequence Length = 153826 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 ggccctcgacggcgccggcca 487 ||||||||||||||||||||| Sbjct: 67278 ggccctcgacggcgccggcca 67298
>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3' end of a novel gene, a novel gene and a CpG island, complete sequence Length = 182653 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 318 gaggaggacgcccgcaggctg 338 ||||||||||||||||||||| Sbjct: 99832 gaggaggacgcccgcaggctg 99812
>gb|U52112.2| Homo sapiens chromosome X clone QLL-D9139, Qc-7G12, Qc-7C1, Qc-12B2, Qc-12D5, QLL-A074, Qc-9D3 map q28, complete sequence Length = 181343 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 ggccctcgacggcgccggcca 487 ||||||||||||||||||||| Sbjct: 39508 ggccctcgacggcgccggcca 39528
>gb|AC159035.2| Pan troglodytes BAC clone CH251-297P8 from chromosome unknown, complete sequence Length = 207834 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 467 ggccctcgacggcgccggcca 487 ||||||||||||||||||||| Sbjct: 37151 ggccctcgacggcgccggcca 37171
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 431 ggcctgcggcgacgagctcgtcgcc 455 |||| |||||||||||||||||||| Sbjct: 8763128 ggccagcggcgacgagctcgtcgcc 8763104
>gb|AC161384.4| Gallus gallus BAC clone CH261-69B2 from chromosome ul, complete sequence Length = 186366 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 483 ggccacgcccccgccgcgctc 503 ||||||||||||||||||||| Sbjct: 127191 ggccacgcccccgccgcgctc 127171
>gb|AC093133.3| Papio anubis clone RP41-57F8, complete sequence Length = 177993 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gcggacatcctgggggacttc 164 ||||||||||||||||||||| Sbjct: 74115 gcggacatcctgggggacttc 74135
>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1001_B06 Length = 134810 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 431 ggcctgcggcgacgagctcgtcgcc 455 |||| |||||||||||||||||||| Sbjct: 33449 ggccagcggcgacgagctcgtcgcc 33425
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 90729 aggccctcgacggcgccggcc 90709
>dbj|AK120552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C13, full insert sequence Length = 3449 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 2869 aggccctcgacggcgccggcc 2849
>dbj|AK105959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D11, full insert sequence Length = 908 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 431 ggcctgcggcgacgagctcgtcgcc 455 |||| |||||||||||||||||||| Sbjct: 288 ggccagcggcgacgagctcgtcgcc 312
>dbj|AK099532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031L04, full insert sequence Length = 854 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 431 ggcctgcggcgacgagctcgtcgcc 455 |||| |||||||||||||||||||| Sbjct: 293 ggccagcggcgacgagctcgtcgcc 317
>dbj|AK068514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152E08, full insert sequence Length = 1748 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 366 aggccctcgacggcgccggcc 386
>dbj|AK066637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071I08, full insert sequence Length = 767 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 431 ggcctgcggcgacgagctcgtcgcc 455 |||| |||||||||||||||||||| Sbjct: 289 ggccagcggcgacgagctcgtcgcc 313
>dbj|AK065834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036J09, full insert sequence Length = 4024 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 3501 aggccctcgacggcgccggcc 3481
>dbj|AK062565.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F09, full insert sequence Length = 2083 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 1628 aggccctcgacggcgccggcc 1608
>dbj|AK060455.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-A05, full insert sequence Length = 901 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 431 ggcctgcggcgacgagctcgtcgcc 455 |||| |||||||||||||||||||| Sbjct: 295 ggccagcggcgacgagctcgtcgcc 319
>dbj|AK060172.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G05, full insert sequence Length = 947 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 aggccctcgacggcgccggcc 486 ||||||||||||||||||||| Sbjct: 413 aggccctcgacggcgccggcc 393
>gb|AC110553.10| Mus musculus chromosome 3, clone RP23-248D8, complete sequence Length = 206620 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 525 gtcagggcccagctctacac 544 |||||||||||||||||||| Sbjct: 160395 gtcagggcccagctctacac 160376
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 cctcgacggcgccggccacg 489 |||||||||||||||||||| Sbjct: 2803512 cctcgacggcgccggccacg 2803493
>ref|XM_466485.1| Oryza sativa (japonica cultivar-group), mRNA Length = 660 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 gccggcaagccctccgccgccgcc 65 |||||||||||| ||||||||||| Sbjct: 115 gccggcaagcccgccgccgccgcc 138
>ref|XM_479236.1| Oryza sativa (japonica cultivar-group), mRNA Length = 312 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gtcgcgggaaggtggtggcgatgg 144 |||||||||||||||||| ||||| Sbjct: 191 gtcgcgggaaggtggtggtgatgg 214
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 gacgctgggcaacgtggaca 234 |||||||||||||||||||| Sbjct: 2172497 gacgctgggcaacgtggaca 2172478
>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0022F22, from chromosome 3, complete sequence Length = 144268 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 34 tccccgtcgccggcaagccctccgccgccgcc 65 |||||| ||||||| || |||||||||||||| Sbjct: 31662 tccccgccgccggcgagtcctccgccgccgcc 31631
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 cgcgggaaggtggtggcgat 142 |||||||||||||||||||| Sbjct: 774384 cgcgggaaggtggtggcgat 774365
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 acacgctgcaccgcatcctcatcc 255 |||| ||||||||||||||||||| Sbjct: 91608 acaccctgcaccgcatcctcatcc 91631
>emb|AL596182.28| Mouse DNA sequence from clone RP23-303F24 on chromosome 11 Contains a pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase (Gapd), the Irf1 gene for interferon regulatory factor 1, a novel gene, the Slc22a5 gene for solute carrier family 22 (organic cation transporter) member 5, a ribosomal protein L27a (Rpl27a) pseudogene, a cyclin-dependent kinase 4 (Cdk4) pseudogene and two CpG islands, complete sequence Length = 191494 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 cggccacgcccccgccgcgc 501 |||||||||||||||||||| Sbjct: 37918 cggccacgcccccgccgcgc 37899
>dbj|AK140826.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130036H05 product:hypothetical protein, full insert sequence Length = 3134 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 gtcagggcccagctctacac 544 |||||||||||||||||||| Sbjct: 1880 gtcagggcccagctctacac 1899
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ctcaagctcgagtgcgtctg 415 |||||||||||||||||||| Sbjct: 935606 ctcaagctcgagtgcgtctg 935625
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gtcgcgggaaggtggtggcgatgg 144 |||||||||||||||||| ||||| Sbjct: 26172840 gtcgcgggaaggtggtggtgatgg 26172863
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 471 ctcgacggcgccggccacgcccccgccg 498 |||| ||||||||||||||||| ||||| Sbjct: 7126563 ctcggcggcgccggccacgcccgcgccg 7126536
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cctcctcttccccaccaagg 381 |||||||||||||||||||| Sbjct: 1194935 cctcctcttccccaccaagg 1194954
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 gccggcaagccctccgccgccgcc 65 |||||||||||| ||||||||||| Sbjct: 23168 gccggcaagcccgccgccgccgcc 23145
>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0006O15 Length = 139723 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 gccggcaagccctccgccgccgcc 65 |||||||||||| ||||||||||| Sbjct: 136704 gccggcaagcccgccgccgccgcc 136681
>dbj|AK072777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139B06, full insert sequence Length = 1030 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 gccggcaagccctccgccgccgcc 65 |||||||||||| ||||||||||| Sbjct: 185 gccggcaagcccgccgccgccgcc 208
>ref|NM_209577.1| Eremothecium gossypii ADR128Cp (ADR128C), mRNA Length = 2604 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ctcaagctcgagtgcgtctg 415 |||||||||||||||||||| Sbjct: 1443 ctcaagctcgagtgcgtctg 1424
>dbj|AK066352.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O03, full insert sequence Length = 1297 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 34 tccccgtcgccggcaagccctccgccgccgcc 65 |||||| ||||||| || |||||||||||||| Sbjct: 125 tccccgccgccggcgagtcctccgccgccgcc 94
>dbj|AK066313.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065E23, full insert sequence Length = 1616 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 34 tccccgtcgccggcaagccctccgccgccgcc 65 |||||| ||||||| || |||||||||||||| Sbjct: 171 tccccgccgccggcgagtcctccgccgccgcc 140
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gtcgcgggaaggtggtggcgatgg 144 |||||||||||||||||| ||||| Sbjct: 64698 gtcgcgggaaggtggtggtgatgg 64721
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cgacgcccacccggcgccgc 312 |||||||||||||||||||| Sbjct: 50910 cgacgcccacccggcgccgc 50929
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cctcctcttccccaccaagg 381 |||||||||||||||||||| Sbjct: 869845 cctcctcttccccaccaagg 869864 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 ccgccgccgccacgaggagcctcc 78 |||||||| ||||||||||||||| Sbjct: 57557 ccgccgcccccacgaggagcctcc 57534
>emb|CT032401.1| Platynereis dumerilii EST IB0AAA38DF05EM1 Length = 894 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gacgcccgcaggctgctctt 343 |||||||||||||||||||| Sbjct: 870 gacgcccgcaggctgctctt 889
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 cggcgccggccacgcccccg 495 |||||||||||||||||||| Sbjct: 1298772 cggcgccggccacgcccccg 1298791
>gb|AC157811.3| Mus musculus chromosome 1, clone RP24-377C24, complete sequence Length = 188752 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 470 cctcgacggcgccggccacgcccccgccgcgc 501 ||||| || |||||||| |||||||||||||| Sbjct: 157198 cctcgccgccgccggcctcgcccccgccgcgc 157167
>gb|AC102564.7| Mus musculus chromosome 1, clone RP23-210C12, complete sequence Length = 230474 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 470 cctcgacggcgccggccacgcccccgccgcgc 501 ||||| || |||||||| |||||||||||||| Sbjct: 177875 cctcgccgccgccggcctcgcccccgccgcgc 177906
>gb|M21066.1|MUSIRF1A Mouse interferon regulatory factor 1 gene, 5' flank Length = 524 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 482 cggccacgcccccgccgcgc 501 |||||||||||||||||||| Sbjct: 242 cggccacgcccccgccgcgc 223
>dbj|D63343.1|ARGTREY Arthrobacter sp. maltooligosyl trehalose synthase (treY) gene and maltooligosyl trehalose trehalohydrolase (treZ) gene, complete cds Length = 5100 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 acatcctgggggacttcggggcgc 171 ||||||||| |||||||||||||| Sbjct: 3837 acatcctggaggacttcggggcgc 3860 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,344,342 Number of Sequences: 3902068 Number of extensions: 4344342 Number of successful extensions: 105968 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103326 Number of HSP's gapped (non-prelim): 2642 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
