ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal39g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463779.1| Oryza sativa (japonica cultivar-group), mRNA 135 3e-29
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 135 3e-29
3dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 135 3e-29
4dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic D... 135 3e-29
5dbj|AK072105.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 3e-29
6dbj|AK067642.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 3e-29
7emb|AJ234416.1|HVU234416 Hordeum vulgare partial mRNA; clone cMW... 82 4e-13
8dbj|AB060810.1| Bruguiera gymnorhiza HPR mRNA for hydroxypyruvat... 64 1e-07
9emb|X14609.1|CSNDHR Cucumis sativus mRNA for NAPH-dependent hydr... 54 9e-05
10dbj|D49433.1| Cucurbita cv. Kurokawa Amakuri mRNA for hydroxypyr... 54 9e-05
11dbj|D49432.1| Cucurbita cv. Kurokawa Amakuri mRNA for hydroxypyr... 54 9e-05
12gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 42 0.36
13gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 1.4
14ref|NM_208920.1| Eremothecium gossypii ACR165Wp (ACR165W), mRNA 40 1.4
15emb|AL157760.9| Human DNA sequence from clone RP11-113P14 on chr... 38 5.6
16emb|AL024473.1|HS707K17 Human DNA sequence from clone RP4-707K17... 38 5.6
17gb|AC006538.1|AC006538 Homo sapiens chromosome 19, BAC 41195 (CI... 38 5.6
18emb|AL928975.10| Zebrafish DNA sequence from clone CH211-133N4, ... 38 5.6
19emb|AJ009611.6|HSAJ9611 Homo sapiens chromosome 19 sequence from... 38 5.6

>ref|XM_463779.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1663

 Score =  135 bits (68), Expect = 3e-29
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                        
Query: 8    gaggttgcactggtggagcacctcanggctaaccccatgttccgtgtcggcctcgatgtt 67
            ||||| ||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| 
Sbjct: 984  gaggtagcactggtggagcacctcaaggccaaccccatgttccgcgtcggtcttgatgtg 1043

                                                                  
Query: 68   tttgaggatgagccttacatgaagccagggctggctgagatgaanaatgccgtc 121
            |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 1044 tttgaggatgagccttacatgaagcccggcctcgctgacatgaagaatgccgtc 1097



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score =  135 bits (68), Expect = 3e-29
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                         
Query: 8     gaggttgcactggtggagcacctcanggctaaccccatgttccgtgtcggcctcgatgtt 67
             ||||| ||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| 
Sbjct: 80869 gaggtagcactggtggagcacctcaaggccaaccccatgttccgcgtcggtcttgatgtg 80810

                                                                   
Query: 68    tttgaggatgagccttacatgaagccagggctggctgagatgaanaatgccgtc 121
             |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 80809 tttgaggatgagccttacatgaagcccggcctcgctgacatgaagaatgccgtc 80756



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>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1370C05
          Length = 148271

 Score =  135 bits (68), Expect = 3e-29
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                         
Query: 8     gaggttgcactggtggagcacctcanggctaaccccatgttccgtgtcggcctcgatgtt 67
             ||||| ||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| 
Sbjct: 75478 gaggtagcactggtggagcacctcaaggccaaccccatgttccgcgtcggtcttgatgtg 75419

                                                                   
Query: 68    tttgaggatgagccttacatgaagccagggctggctgagatgaanaatgccgtc 121
             |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 75418 tttgaggatgagccttacatgaagcccggcctcgctgacatgaagaatgccgtc 75365



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>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1435_F07
          Length = 139041

 Score =  135 bits (68), Expect = 3e-29
 Identities = 102/114 (89%)
 Strand = Plus / Minus

                                                                         
Query: 8     gaggttgcactggtggagcacctcanggctaaccccatgttccgtgtcggcctcgatgtt 67
             ||||| ||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| 
Sbjct: 29896 gaggtagcactggtggagcacctcaaggccaaccccatgttccgcgtcggtcttgatgtg 29837

                                                                   
Query: 68    tttgaggatgagccttacatgaagccagggctggctgagatgaanaatgccgtc 121
             |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 29836 tttgaggatgagccttacatgaagcccggcctcgctgacatgaagaatgccgtc 29783



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>dbj|AK072105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119J12, full
            insert sequence
          Length = 2837

 Score =  135 bits (68), Expect = 3e-29
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                        
Query: 8    gaggttgcactggtggagcacctcanggctaaccccatgttccgtgtcggcctcgatgtt 67
            ||||| ||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| 
Sbjct: 912  gaggtagcactggtggagcacctcaaggccaaccccatgttccgcgtcggtcttgatgtg 971

                                                                  
Query: 68   tttgaggatgagccttacatgaagccagggctggctgagatgaanaatgccgtc 121
            |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 972  tttgaggatgagccttacatgaagcccggcctcgctgacatgaagaatgccgtc 1025



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>dbj|AK067642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108J23, full
            insert sequence
          Length = 1662

 Score =  135 bits (68), Expect = 3e-29
 Identities = 102/114 (89%)
 Strand = Plus / Plus

                                                                        
Query: 8    gaggttgcactggtggagcacctcanggctaaccccatgttccgtgtcggcctcgatgtt 67
            ||||| ||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| 
Sbjct: 985  gaggtagcactggtggagcacctcaaggccaaccccatgttccgcgtcggtcttgatgtg 1044

                                                                  
Query: 68   tttgaggatgagccttacatgaagccagggctggctgagatgaanaatgccgtc 121
            |||||||||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct: 1045 tttgaggatgagccttacatgaagcccggcctcgctgacatgaagaatgccgtc 1098



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>emb|AJ234416.1|HVU234416 Hordeum vulgare partial mRNA; clone cMWG0679.uni
          Length = 228

 Score = 81.8 bits (41), Expect = 4e-13
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 1   gatcgacgaggttgcactggtggagcacctcanggctaacccca 44
           |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 185 gatcgacgaggttgcactggtggagcacctcaaggctaacccca 228



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>dbj|AB060810.1| Bruguiera gymnorhiza HPR mRNA for hydroxypyruvate reductase,
           complete cds
          Length = 1576

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 44  atgttccgtgtcggcctcgatgtttttgaggatgagccttacatgaagccagggctggct 103
           |||||||| || ||||| ||||| || ||||| || |||||||||||||||||||| || 
Sbjct: 905 atgttccgggttggccttgatgtcttcgaggacgaaccttacatgaagccagggcttgcc 964

                          
Query: 104 gagatgaanaatgcc 118
           || ||||| ||||||
Sbjct: 965 gacatgaagaatgcc 979



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>emb|X14609.1|CSNDHR Cucumis sativus mRNA for NAPH-dependent hydroxypyruvate reductase
           (EC 1.1.1.29)
          Length = 1437

 Score = 54.0 bits (27), Expect = 9e-05
 Identities = 60/71 (84%)
 Strand = Plus / Plus

                                                                       
Query: 41  cccatgttccgtgtcggcctcgatgtttttgaggatgagccttacatgaagccagggctg 100
           |||||||| || || ||||| ||||||||||||||||| || |||||||| || || || 
Sbjct: 908 cccatgtttcgagttggccttgatgtttttgaggatgaaccatacatgaaacctggactt 967

                      
Query: 101 gctgagatgaa 111
           ||||| |||||
Sbjct: 968 gctgatatgaa 978



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>dbj|D49433.1| Cucurbita cv. Kurokawa Amakuri mRNA for hydroxypyruvate reductase,
           complete cds
          Length = 1362

 Score = 54.0 bits (27), Expect = 9e-05
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 56  ggcctcgatgtttttgaggatgagccttacatgaagccagggctggctgagatgaanaat 115
           ||||||||||| || |||||||| || |||||||| || ||||| ||||| ||||| |||
Sbjct: 913 ggcctcgatgtcttcgaggatgaaccatacatgaaacctgggcttgctgatatgaagaat 972

             
Query: 116 gc 117
           ||
Sbjct: 973 gc 974



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>dbj|D49432.1| Cucurbita cv. Kurokawa Amakuri mRNA for hydroxypyruvate reductase,
           complete cds
          Length = 1269

 Score = 54.0 bits (27), Expect = 9e-05
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 56  ggcctcgatgtttttgaggatgagccttacatgaagccagggctggctgagatgaanaat 115
           ||||||||||| || |||||||| || |||||||| || ||||| ||||| ||||| |||
Sbjct: 913 ggcctcgatgtcttcgaggatgaaccatacatgaaacctgggcttgctgatatgaagaat 972

             
Query: 116 gc 117
           ||
Sbjct: 973 gc 974



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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 42.1 bits (21), Expect = 0.36
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 60      tcgatgtttttgaggatgagcctta 84
               |||||||||||||||| ||||||||
Sbjct: 1676855 tcgatgtttttgaggaagagcctta 1676879



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>gb|AE016816.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome III,
              complete sequence
          Length = 907057

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 56     ggcctcgatgtttttgaggatgagcctt 83
              ||||||||||||| |||||||| |||||
Sbjct: 647519 ggcctcgatgtttgtgaggatgggcctt 647546



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>ref|NM_208920.1| Eremothecium gossypii ACR165Wp (ACR165W), mRNA
          Length = 3420

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 56   ggcctcgatgtttttgaggatgagcctt 83
            ||||||||||||| |||||||| |||||
Sbjct: 3291 ggcctcgatgtttgtgaggatgggcctt 3318



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>emb|AL157760.9| Human DNA sequence from clone RP11-113P14 on chromosome 13 Contains the
             3' end of the DCAMKL1 gene for doublecortin and CaM
             kinase-like 1 (DCLK KIAA0369), complete sequence
          Length = 108649

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 73    ggatgagccttacatgaagccag 95
             |||||||||||||||| ||||||
Sbjct: 94711 ggatgagccttacatgcagccag 94733



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>emb|AL024473.1|HS707K17 Human DNA sequence from clone RP4-707K17 on chromosome 20q13.1 Contains
             part of the PTPRT gene for protein tyrosine phosphatase
             receptor type T, ESTs, STSs and GSSs, complete sequence
          Length = 107387

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 85    catgaagccagggctggct 103
             |||||||||||||||||||
Sbjct: 38980 catgaagccagggctggct 38998



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>gb|AC006538.1|AC006538 Homo sapiens chromosome 19, BAC 41195 (CIT-B-31c16), complete sequence
          Length = 177540

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 91     gccagggctggctgagatg 109
              |||||||||||||||||||
Sbjct: 152389 gccagggctggctgagatg 152371



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>emb|AL928975.10| Zebrafish DNA sequence from clone CH211-133N4, complete sequence
          Length = 174480

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 64     tgtttttgaggatgagcct 82
              |||||||||||||||||||
Sbjct: 134871 tgtttttgaggatgagcct 134853



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>emb|AJ009611.6|HSAJ9611 Homo sapiens chromosome 19 sequence from PAC RPCI-1 155I10, complete
             sequence
          Length = 112022

 Score = 38.2 bits (19), Expect = 5.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 91    gccagggctggctgagatg 109
             |||||||||||||||||||
Sbjct: 18541 gccagggctggctgagatg 18523


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 760,591
Number of Sequences: 3902068
Number of extensions: 760591
Number of successful extensions: 46258
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46208
Number of HSP's gapped (non-prelim): 50
length of query: 121
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 100
effective length of database: 17,151,101,840
effective search space: 1715110184000
effective search space used: 1715110184000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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