ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39f07 |
|---|---|
| Clone Library Name | barley_pub |
>IMDH_METJA (Q59011) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 496 Score = 34.3 bits (77), Expect = 0.15 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -2 Query: 421 ESPGRQLVAVAVVDEPLLRQTQLLAADGEEGEAVGVHE-YDLAGRAAGVGLDAEDEVAVA 245 E Q+ AV DE +++ ++ D GEA+ V E Y ++G +D ED++ Sbjct: 80 EEQVHQVQAVKKADEVVIKDVITVSPDDTVGEAINVMETYSISGLPV---VDNEDKLVGI 136 Query: 244 VEHREPLAVEEQ 209 + HR+ A+E++ Sbjct: 137 ITHRDVKAIEDK 148
>CYSJ_ECO57 (Q8X7U1) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 598 Score = 30.4 bits (67), Expect = 2.1 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 15/80 (18%) Frame = -2 Query: 424 RESPGRQLVAVAVVD--EPLLRQTQLLAADGEEGE-----AVGVHEYDLAGRAAGVG--- 275 R SP QL A A+++ PL + +A+ EE E VGV YD+ GRA G Sbjct: 364 RFSPA-QLDAEALINLLRPLTPRLYSIASSQEEVENEVHVTVGVVRYDVEGRARAGGASS 422 Query: 274 -----LDAEDEVAVAVEHRE 230 ++ E EV V +EH + Sbjct: 423 FLADRVEEEGEVRVFIEHND 442
>AROK_PYRKO (Q5JFT2) Shikimate kinase (EC 2.7.1.71) (SK)| Length = 271 Score = 30.0 bits (66), Expect = 2.8 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Frame = +2 Query: 176 EAVSLTV---WRRSLLFNGKGFTVFDSNGNLVFRVETYARGSPREVVLMDADGLALLTVR 346 EAV L + WR++ L NG ++ + + FR+ RG+ VV + G A+ V Sbjct: 194 EAVRLALEGEWRKAALINGLVYSTYLGHPIEPFRI-ALERGA---VVGLSGKGPAVFAVT 249 Query: 347 RKKLSLAEEW 376 + LAEEW Sbjct: 250 NEPEELAEEW 259
>CYSJ_SALTY (P38039) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 598 Score = 30.0 bits (66), Expect = 2.8 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 15/80 (18%) Frame = -2 Query: 424 RESPGRQLVAVAVVD--EPLLRQTQLLAADGEEGEA-----VGVHEYDLAGRAAGVG--- 275 R SP QL A A++D PL + +A+ E E+ VGV YD+ GRA G Sbjct: 364 RFSPA-QLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASS 422 Query: 274 -----LDAEDEVAVAVEHRE 230 ++ E EV V +EH + Sbjct: 423 FLADRVEEEGEVRVFIEHND 442
>CYSJ_SALTI (Q8Z458) Sulfite reductase [NADPH] flavoprotein alpha-component (EC| 1.8.1.2) (SIR-FP) Length = 598 Score = 30.0 bits (66), Expect = 2.8 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 15/80 (18%) Frame = -2 Query: 424 RESPGRQLVAVAVVD--EPLLRQTQLLAADGEEGEA-----VGVHEYDLAGRAAGVG--- 275 R SP QL A A++D PL + +A+ E E+ VGV YD+ GRA G Sbjct: 364 RFSPA-QLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASS 422 Query: 274 -----LDAEDEVAVAVEHRE 230 ++ E EV V +EH + Sbjct: 423 FLADRVEEEGEVRVFIEHND 442
>GCST_GEOKA (Q5KX76) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 364 Score = 30.0 bits (66), Expect = 2.8 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -2 Query: 427 RRESPGRQLVAVAVVDEPLLRQTQLLAADGEE 332 + E P R+LV + ++D + R L+ ADGEE Sbjct: 277 KEEGPPRRLVGIEMIDRGIPRHGYLVFADGEE 308
>GCST_NOCFA (Q5YZ49) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage| system T protein) Length = 366 Score = 30.0 bits (66), Expect = 2.8 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 11/83 (13%) Frame = -2 Query: 415 PGRQLVAVAVVDEPLLRQTQLLAADGEE-GEA----------VGVHEYDLAGRAAGVGLD 269 P R L+ + +D +LRQ Q + DGE GE VG+ LA G GL+ Sbjct: 281 PRRILMGLKAIDRGVLRQGQPVLRDGEPVGETTSGTFSPTLKVGI---ALALLDTGAGLE 337 Query: 268 AEDEVAVAVEHREPLAVEEQRPP 200 EVAV V R L E +PP Sbjct: 338 PGAEVAVDVRGRR-LRCEVVKPP 359
>MUTS_TREDE (P61672) DNA mismatch repair protein mutS| Length = 891 Score = 29.6 bits (65), Expect = 3.6 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = -2 Query: 340 GEEGEAVGVHEYDLAGRAAGVGLDAEDEVAVAVEHREPLAVEEQRPPPHGERHRLP 173 G G + G+H LAG V AE+ + + + ++ ++E RP G + P Sbjct: 788 GAAGNSYGIHVAGLAGIPQSVLTRAENLLYMRSQFQKERTIQEARPSAQGSEEKTP 843
>THIC_STRCO (Q9X9U0) Thiamine biosynthesis protein thiC| Length = 612 Score = 29.3 bits (64), Expect = 4.7 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = +2 Query: 200 RRSLLFNGKGFTVFDSNGNLVFRVETYARGSPREVVLMDADGLALLTVRRKKLSLAEEWL 379 R+ L NG+ T++D++G P L+D D VRR L E W+ Sbjct: 55 RQVHLTNGQSVTLYDTSG-------------PYTDPLVDTD------VRRGLAPLRENWI 95 Query: 380 VYDGDGDELAPR 415 + GD +E A R Sbjct: 96 IARGDTEEYAGR 107
>RPOB_LEIXX (Q6ACX5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1165 Score = 29.3 bits (64), Expect = 4.7 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = -2 Query: 370 LRQTQLLAADGEEGEAVGVHEYDLAGRAAGVGLDAEDEVAVAVEHREPLAVEEQRPPPHG 191 +R T L GEEG +GV +D D +DE+ V R + + ++R G Sbjct: 822 VRDTSLKVPHGEEGTIIGVKVFD--------AQDGDDELGSGVNQRVVVYIAQKRKITAG 873 Query: 190 ER 185 ++ Sbjct: 874 DK 875
>FMT_SYNPX (Q7U6Z1) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 338 Score = 28.9 bits (63), Expect = 6.2 Identities = 31/93 (33%), Positives = 40/93 (43%) Frame = -2 Query: 433 PPRRESPGRQLVAVAVVDEPLLRQTQLLAADGEEGEAVGVHEYDLAGRAAGVGLDAEDEV 254 P RR G+QLVA AV E L + + + ++ D + A + DA V Sbjct: 33 PDRRRGRGQQLVASAVKQEALNLNLPVFTPERIKKDS------DCQAQLAALKADA--SV 84 Query: 253 AVAVEHREPLAVEEQRPPPHGERHRLPLLLRRW 155 VA PL V EQ PP G + LL RW Sbjct: 85 VVAFGQILPLEVLEQ--PPLGCWNGHGSLLPRW 115
>PNCB_ECOLI (P18133) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 399 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +2 Query: 197 WRRSLLFNGKGFTVFDSNGNLVFRVETYARGSPREVVLMDADGLALLT 340 W R FN + TV + NG L R+ G REV+L + LA+++ Sbjct: 86 WLREFRFNPEQVTVSNDNGKLDIRLS----GPWREVILWEVPLLAVIS 129
>PNCB_ECO57 (Q8XDE8) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 399 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +2 Query: 197 WRRSLLFNGKGFTVFDSNGNLVFRVETYARGSPREVVLMDADGLALLT 340 W R FN + TV + NG L R+ G REV+L + LA+++ Sbjct: 86 WLREFRFNPEQVTVSNDNGKLDIRLS----GPWREVILWEVPLLAVIS 129
>MURE_XYLFT (Q87AF5) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 28.5 bits (62), Expect = 8.1 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -3 Query: 78 ATRACGGLLCFAGCRGSQSKGRR 10 ++ CG L+C GC G + +G+R Sbjct: 367 SSHVCGRLICVFGCGGERDRGKR 389
>MURE_XYLFA (Q9PF85) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 495 Score = 28.5 bits (62), Expect = 8.1 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -3 Query: 78 ATRACGGLLCFAGCRGSQSKGRR 10 ++ CG L+C GC G + +G+R Sbjct: 367 SSHVCGRLICVFGCGGERDRGKR 389
>PNCB_ECOL6 (Q8FJ98) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 400 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = +2 Query: 197 WRRSLLFNGKGFTVFDSNGNLVFRVETYARGSPREVVLMDADGLALLT 340 W R FN + TV + NG L R+ G REV+L + LA+++ Sbjct: 87 WLREFRFNPEQVTVSNDNGKLDIRLS----GPWREVILWEVPLLAVIS 130 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,958,100 Number of Sequences: 219361 Number of extensions: 943621 Number of successful extensions: 3122 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3039 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3121 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
