>BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein (Fanconi|
           anemia group D1 protein)
          Length = 3418

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 288 ENQPAENKFIPLSERVLSCAAHPLSHTIV--CGTEFSSLLMVSQKHE 422
           EN P   K   + E VL+ A HP+ H+ V    T+F S   +   HE
Sbjct: 718 ENDPKSKKVSDIKEEVLAAACHPVQHSKVEYSDTDFQSQKSLLYDHE 764

>CCDC4_HUMAN (Q6ZU67) Coiled-coil domain-containing protein 4|
          Length = 530

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +3

Query: 162 LSTSSIYAVGSSSNNGMYALDFHPDTSSACHVDYNEETKG-CEENQPAENKFIPLSERVL 338
           LSTS ++ +G  ++        HP +S+    +  E+ +G C   Q  E + I L +   
Sbjct: 278 LSTSPVHTLGGWTSPATSESHGHPSSSTLPEEEEEEDEEGYCPRCQELEQEVISLQQENE 337

Query: 339 SCAAHPLSHTIVCGTEFSSLLMVSQKHETVRDPE 440
                  S  + C T    L MV Q H  +  P+
Sbjct: 338 ELRRKLESIPVPCQTVLDYLKMVLQHHNQLLIPQ 371

>PP4R1_HUMAN (Q8TF05) Serine/threonine-protein phosphatase 4 regulatory subunit|
           1
          Length = 950

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 285 RSLLFPRCSRRGMRSLYLDENPVHTFHYWRKIRLHKLKMSTARSLSAYATQSPHPPTKQE 106
           +S+L P        S  LD+   ++FH+WR   L ++ +      ++    SP  P ++ 
Sbjct: 431 KSMLRPEVGTTSQDSALLDQELYNSFHFWR-TPLPEIDLDIELEQNSGGKPSPEGPEEES 489

Query: 105 EG 100
           EG
Sbjct: 490 EG 491

>GHR_SAIBB (Q95ML5) Growth hormone receptor precursor (GH receptor)|
           (Somatotropin receptor) [Contains: Growth
           hormone-binding protein (GH-binding protein) (GHBP)
           (Serum-binding protein)]
          Length = 632

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +3

Query: 72  NTFSVSHLHCPPPAWLEGVDSVLHKRKGTWLSTSSIYAVGSSSNNGMYALDFHPDTSSAC 251
           +T   +H+    P+ L  +D        T  + S + + G  +N GM   D HP+  S C
Sbjct: 466 STHQAAHIQLSNPSSLANIDFYAQVSDIT-PAGSVVLSPGQKNNGGMSQWDMHPEVVSLC 524

Query: 252 HVDY 263
             ++
Sbjct: 525 QANF 528

>SYT_SULTO (Q973C8) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 540

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = +3

Query: 138 LHKRKGTWLSTSSIYAVGSSSNN------GMYALDFHPDTSSACHVDYNEETKGCEENQ 296
           + + KG WL    IYA+  +SN       G+   DF+ D  S   +  +E  K    NQ
Sbjct: 1   MEEYKGVWLKAGIIYALNLASNGFKPVEVGLGERDFYVDVESDTTLTLDEAKKFATYNQ 59

>POLN_MAYAB (Q8QZ73) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
            [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC
            2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1);
            Protease/triphosphatase/NTPase/helicase nsP2 (EC
            3.4.22.-) (EC 3.1.3.33) (EC
          Length = 2436

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 27/101 (26%), Positives = 45/101 (44%)
 Frame = +3

Query: 57   GVLNVNTFSVSHLHCPPPAWLEGVDSVLHKRKGTWLSTSSIYAVGSSSNNGMYALDFHPD 236
            GV  V    V      PPA +  V  + ++ + T +S SS      SS+     L   PD
Sbjct: 1633 GVQRVKCEKVMLFDAAPPASVSPVQYLTNQSETT-ISLSSFSITSDSSS-----LSTFPD 1686

Query: 237  TSSACHVDYNEETKGCEENQPAENKFIPLSERVLSCAAHPL 359
              SA  +D++ ++     N+P +++  P +E     A HP+
Sbjct: 1687 LESAEELDHDSQSVRPALNEPDDHQPTPTAE----LATHPV 1723

>WFDC1_CHICK (Q8JG33) WAP four-disulfide core domain protein 1 precursor (ps20|
           protein)
          Length = 222

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 305 FCRLIFLAAFCFLVVV-DVACGACIWMK 225
           FCR IF AA C LV++ D  C   +W +
Sbjct: 11  FCRRIFAAALCVLVLLADSGCARNLWKR 38

>NRAM_IASH2 (P03478) Neuraminidase (EC 3.2.1.18)|
          Length = 468

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = +3

Query: 48  GWSGVLNVNTFSVSHLHCPPPAWLEGVDSVLHKRKGTWLSTSSIYAVGSSS 200
           G+SG   + T   S     P  WLE +     +R   W S+SS    G SS
Sbjct: 398 GYSGAFTIPTAMTSKNCIVPCFWLEMIRGKPEERTSIWTSSSSTVFCGVSS 448


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,626,727
Number of Sequences: 219361
Number of extensions: 2274453
Number of successful extensions: 6023
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6023
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)