ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal39e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111490.1| Zea mays CL44711_1 mRNA sequence 180 4e-42
2ref|XM_466484.1| Oryza sativa (japonica cultivar-group), mRNA 155 2e-34
3dbj|AK102016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
5dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
6dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-10
7gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, com... 42 2.2
8gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, co... 42 2.2
9gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, co... 42 2.2
10ref|XM_845829.1| PREDICTED: Canis familiaris similar to ATP-bind... 42 2.2
11emb|Z70226.1|HSV1077H7 Human DNA sequence from clone GHc-1077H7 ... 42 2.2
12emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chr... 42 2.2
13emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment ... 42 2.2
14gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cance... 42 2.2
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17gb|AC158657.2| Mus musculus 6 BAC RP23-395C12 (Roswell Park Canc... 42 2.2
18ref|XM_516571.1| PREDICTED: Pan troglodytes similar to COP9 sign... 40 8.5
19ref|NM_198189.2| Homo sapiens COP9 constitutive photomorphogenic... 40 8.5
20ref|NM_006710.4| Homo sapiens COP9 constitutive photomorphogenic... 40 8.5
21ref|XM_516177.1| PREDICTED: Pan troglodytes similar to COP9 sign... 40 8.5
22ref|XM_359900.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.5
23gb|BC003090.1| Homo sapiens COP9 constitutive photomorphogenic h... 40 8.5
24gb|DQ017631.1| Danio rerio TR2 mRNA, partial cds 40 8.5
25gb|U51205.1|HSU51205 Homo sapiens COP9 signalosome subunit 8 CSN... 40 8.5
26ref|NM_001020622.1| Danio rerio zgc:110672 (zgc:110672), mRNA 40 8.5
27ref|XM_391588.1| Gibberella zeae PH-1 chromosome linkage group 1... 40 8.5
28emb|AL929403.9| Human DNA sequence from clone RP13-438O9 on chro... 40 8.5
29gb|BC036499.1| Homo sapiens COP9 constitutive photomorphogenic h... 40 8.5
30emb|CR857307.1| Pongo pygmaeus mRNA; cDNA DKFZp469J0132 (from cl... 40 8.5
31emb|CR625642.1| full-length cDNA clone CS0DI053YE04 of Placenta ... 40 8.5
32emb|CR624288.1| full-length cDNA clone CS0DI060YF09 of Placenta ... 40 8.5
33emb|CR624139.1| full-length cDNA clone CS0DF016YE07 of Fetal bra... 40 8.5
34emb|CR621907.1| full-length cDNA clone CS0DN004YN01 of Adult bra... 40 8.5
35emb|CR619073.1| full-length cDNA clone CS0DK001YK07 of HeLa cell... 40 8.5
36emb|CR612357.1| full-length cDNA clone CS0DA010YL02 of Neuroblas... 40 8.5
37emb|CR613293.1| full-length cDNA clone CS0DL011YG15 of B cells (... 40 8.5
38emb|CR611203.1| full-length cDNA clone CS0DJ014YC12 of T cells (... 40 8.5
39emb|CR607837.1| full-length cDNA clone CS0DF021YF24 of Fetal bra... 40 8.5
40emb|CR605123.1| full-length cDNA clone CS0DI002YO05 of Placenta ... 40 8.5
41emb|CR601867.1| full-length cDNA clone CS0DI081YA14 of Placenta ... 40 8.5
42emb|CR595867.1| full-length cDNA clone CS0DG002YI15 of B cells (... 40 8.5
43emb|CR595044.1| full-length cDNA clone CS0DN005YI22 of Adult bra... 40 8.5
44emb|CR594862.1| full-length cDNA clone CS0DI061YE09 of Placenta ... 40 8.5
45emb|CR593683.1| full-length cDNA clone CS0DI009YL11 of Placenta ... 40 8.5
46emb|CR593384.1| full-length cDNA clone CS0DI067YA06 of Placenta ... 40 8.5
47emb|CR456994.1| Homo sapiens full open reading frame cDNA clone ... 40 8.5
48gb|AC092416.3| Homo sapiens chromosome 3 clone RP11-89A12, compl... 40 8.5
49gb|BC095365.1| Danio rerio zgc:110672, mRNA (cDNA clone MGC:1106... 40 8.5
50ref|NG_003103.1| Homo sapiens COP9 pseudogene (LOC375350) on chr... 40 8.5
51gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, comple... 40 8.5
52gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome 40 8.5
53emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chr... 40 8.5
54gb|BC080617.1| Homo sapiens COP9 constitutive photomorphogenic h... 40 8.5
55emb|BX640593.8| Zebrafish DNA sequence from clone DKEY-183C16 in... 40 8.5
56gb|U40942.2| Caenorhabditis elegans cosmid K02E10, complete sequ... 40 8.5
57emb|AL844573.4| Mouse DNA sequence from clone RP23-277B16 on chr... 40 8.5
58emb|AL807251.2| Human DNA sequence from clone RP11-425M20 on chr... 40 8.5 
>gb|AY111490.1| Zea mays CL44711_1 mRNA sequence
          Length = 637

 Score =  180 bits (91), Expect = 4e-42
 Identities = 154/175 (88%)
 Strand = Plus / Minus

                                                                       
Query: 240 agctccgcatgccacgtcgactacaacgaggaaacaaaaggctgcgaggaaaatcaacct 299
           ||||| |||||||| || |||||||| |||||||||| || || || |||||||||||||
Sbjct: 585 agctctgcatgccatgtggactacaaagaggaaacaagagtctccggggaaaatcaacct 526

                                                                       
Query: 300 gcagaaaacaagtttattcccttatctgaaagggtgctttcctgtgcagcccatccactc 359
           |||| |||||||||| |||| |||||  ||||||||||||||||||||||||||||||||
Sbjct: 525 gcaggaaacaagtttgttcctttatcccaaagggtgctttcctgtgcagcccatccactc 466

                                                                  
Query: 360 agtcacaccatagtttgtggtaccgagttttcatcgttactcatggtatcacaaa 414
           |||||||||||| ||  ||||||  |||| |||||||| |||||| |||||||||
Sbjct: 465 agtcacaccataattgctggtacacagttctcatcgttgctcatgttatcacaaa 411
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>ref|XM_466484.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2085

 Score =  155 bits (78), Expect = 2e-34
 Identities = 173/204 (84%), Gaps = 3/204 (1%)
 Strand = Plus / Plus

                                                                        
Query: 155  gacctggctgtcgacatcttcaatttatgcagtcggatcttcctccaataatg---gaat 211
            ||||||| || |||||||||||||||||||||| |||||| ||||||||| ||   | ||
Sbjct: 1309 gacctggttgccgacatcttcaatttatgcagttggatctgcctccaatactgttggcat 1368

                                                                        
Query: 212  gtatgcactggattttcatccagatacaagctccgcatgccacgtcgactacaacgagga 271
            | ||  |||||||||||||||||||||||| || |||||||| ||||||||||| |||||
Sbjct: 1369 gcatctactggattttcatccagatacaagttcagcatgccatgtcgactacaatgagga 1428

                                                                        
Query: 272  aacaaaaggctgcgaggaaaatcaacctgcagaaaacaagtttattcccttatctgaaag 331
            || || ||||| ||| |||||  ||||||||| ||||||||||||||| | |||| | ||
Sbjct: 1429 aataagaggctccgatgaaaagaaacctgcagcaaacaagtttattccttcatctcagag 1488

                                    
Query: 332  ggtgctttcctgtgcagcccatcc 355
             ||  ||||||||||||| |||||
Sbjct: 1489 agttgtttcctgtgcagcacatcc 1512



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 100/117 (85%)
 Strand = Plus / Plus

                                                                        
Query: 6    aaccccagttgctcatatcagttggccttccatcttgatgatgggtggtctggggtactg 65
            ||||| ||||||||||||||||| ||||||||||||||  |||| |||||||| |   ||
Sbjct: 1154 aaccctagttgctcatatcagttagccttccatcttgacaatggctggtctggagccttg 1213

                                                                     
Query: 66   aatgtcaacactttcagtgttagtcatctgcactgccctcctcctgcttggttggag 122
            ||  | |||||  ||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 1214 aacattaacaccctcagtgtgagtcacctgcactgccctcctcctgattggttggag 1270
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>dbj|AK102016.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033080F08, full
            insert sequence
          Length = 2085

 Score =  155 bits (78), Expect = 2e-34
 Identities = 173/204 (84%), Gaps = 3/204 (1%)
 Strand = Plus / Plus

                                                                        
Query: 155  gacctggctgtcgacatcttcaatttatgcagtcggatcttcctccaataatg---gaat 211
            ||||||| || |||||||||||||||||||||| |||||| ||||||||| ||   | ||
Sbjct: 1309 gacctggttgccgacatcttcaatttatgcagttggatctgcctccaatactgttggcat 1368

                                                                        
Query: 212  gtatgcactggattttcatccagatacaagctccgcatgccacgtcgactacaacgagga 271
            | ||  |||||||||||||||||||||||| || |||||||| ||||||||||| |||||
Sbjct: 1369 gcatctactggattttcatccagatacaagttcagcatgccatgtcgactacaatgagga 1428

                                                                        
Query: 272  aacaaaaggctgcgaggaaaatcaacctgcagaaaacaagtttattcccttatctgaaag 331
            || || ||||| ||| |||||  ||||||||| ||||||||||||||| | |||| | ||
Sbjct: 1429 aataagaggctccgatgaaaagaaacctgcagcaaacaagtttattccttcatctcagag 1488

                                    
Query: 332  ggtgctttcctgtgcagcccatcc 355
             ||  ||||||||||||| |||||
Sbjct: 1489 agttgtttcctgtgcagcacatcc 1512



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 100/117 (85%)
 Strand = Plus / Plus

                                                                        
Query: 6    aaccccagttgctcatatcagttggccttccatcttgatgatgggtggtctggggtactg 65
            ||||| ||||||||||||||||| ||||||||||||||  |||| |||||||| |   ||
Sbjct: 1154 aaccctagttgctcatatcagttagccttccatcttgacaatggctggtctggagccttg 1213

                                                                     
Query: 66   aatgtcaacactttcagtgttagtcatctgcactgccctcctcctgcttggttggag 122
            ||  | |||||  ||||||| ||||| ||||||||||||||||||| ||||||||||
Sbjct: 1214 aacattaacaccctcagtgtgagtcacctgcactgccctcctcctgattggttggag 1270
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 79/92 (85%), Gaps = 3/92 (3%)
 Strand = Plus / Minus

                                                                            
Query: 177      atttatgcagtcggatcttcctccaataatg---gaatgtatgcactggattttcatcca 233
                ||||||||||| |||||| ||||||||| ||   | ||| ||  ||||||||||||||||
Sbjct: 22892496 atttatgcagttggatctgcctccaatactgttggcatgcatctactggattttcatcca 22892437

                                                
Query: 234      gatacaagctccgcatgccacgtcgactacaa 265
                |||||||| || |||||||| |||||||||||
Sbjct: 22892436 gatacaagttcagcatgccatgtcgactacaa 22892405



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 6        aaccccagttgctcatatcagttggccttccatcttga 43
                ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 22893148 aaccctagttgctcatatcagttagccttccatcttga 22893111



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 79       tcagtgttagtcatctgcactgccctcctcctgcttggttg 119
                ||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 22892894 tcagtgtgagtcacctgcactgccctcctcctgattggttg 22892854



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                            
Query: 267      gaggaaacaaaaggctgcgaggaaaatcaacctgcagaaaacaagtttattcccttatct 326
                ||||||| || ||||| ||| |||||  ||||||||| ||||||||||||||| | ||||
Sbjct: 22892300 gaggaaataagaggctccgatgaaaagaaacctgcagcaaacaagtttattccttcatct 22892241

                                             
Query: 327      gaaagggtgctttcctgtgcagcccatcc 355
                 | || ||  ||||||||||||| |||||
Sbjct: 22892240 cagagagttgtttcctgtgcagcacatcc 22892212
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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 79/92 (85%), Gaps = 3/92 (3%)
 Strand = Plus / Minus

                                                                         
Query: 177   atttatgcagtcggatcttcctccaataatg---gaatgtatgcactggattttcatcca 233
             ||||||||||| |||||| ||||||||| ||   | ||| ||  ||||||||||||||||
Sbjct: 12298 atttatgcagttggatctgcctccaatactgttggcatgcatctactggattttcatcca 12239

                                             
Query: 234   gatacaagctccgcatgccacgtcgactacaa 265
             |||||||| || |||||||| |||||||||||
Sbjct: 12238 gatacaagttcagcatgccatgtcgactacaa 12207



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 6     aaccccagttgctcatatcagttggccttccatcttga 43
             ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 12950 aaccctagttgctcatatcagttagccttccatcttga 12913



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                      
Query: 79    tcagtgttagtcatctgcactgccctcctcctgcttggttg 119
             ||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 12696 tcagtgtgagtcacctgcactgccctcctcctgattggttg 12656



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                         
Query: 267   gaggaaacaaaaggctgcgaggaaaatcaacctgcagaaaacaagtttattcccttatct 326
             ||||||| || ||||| ||| |||||  ||||||||| ||||||||||||||| | ||||
Sbjct: 12102 gaggaaataagaggctccgatgaaaagaaacctgcagcaaacaagtttattccttcatct 12043

                                          
Query: 327   gaaagggtgctttcctgtgcagcccatcc 355
              | || ||  ||||||||||||| |||||
Sbjct: 12042 cagagagttgtttcctgtgcagcacatcc 12014
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>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0006O15
          Length = 139723

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 79/92 (85%), Gaps = 3/92 (3%)
 Strand = Plus / Minus

                                                                          
Query: 177    atttatgcagtcggatcttcctccaataatg---gaatgtatgcactggattttcatcca 233
              ||||||||||| |||||| ||||||||| ||   | ||| ||  ||||||||||||||||
Sbjct: 125834 atttatgcagttggatctgcctccaatactgttggcatgcatctactggattttcatcca 125775

                                              
Query: 234    gatacaagctccgcatgccacgtcgactacaa 265
              |||||||| || |||||||| |||||||||||
Sbjct: 125774 gatacaagttcagcatgccatgtcgactacaa 125743



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 6      aaccccagttgctcatatcagttggccttccatcttga 43
              ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 126486 aaccctagttgctcatatcagttagccttccatcttga 126449



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 79     tcagtgttagtcatctgcactgccctcctcctgcttggttg 119
              ||||||| ||||| ||||||||||||||||||| |||||||
Sbjct: 126232 tcagtgtgagtcacctgcactgccctcctcctgattggttg 126192



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 74/89 (83%)
 Strand = Plus / Minus

                                                                          
Query: 267    gaggaaacaaaaggctgcgaggaaaatcaacctgcagaaaacaagtttattcccttatct 326
              ||||||| || ||||| ||| |||||  ||||||||| ||||||||||||||| | ||||
Sbjct: 125638 gaggaaataagaggctccgatgaaaagaaacctgcagcaaacaagtttattccttcatct 125579

                                           
Query: 327    gaaagggtgctttcctgtgcagcccatcc 355
               | || ||  ||||||||||||| |||||
Sbjct: 125578 cagagagttgtttcctgtgcagcacatcc 125550
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>gb|AC146277.2| Pan troglodytes BAC clone CH251-17J20 from X, complete sequence
          Length = 160219

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     ttccatcttgatgatgggtgg 53
              |||||||||||||||||||||
Sbjct: 124837 ttccatcttgatgatgggtgg 124817
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>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 33    ttccatcttgatgatgggtgg 53
             |||||||||||||||||||||
Sbjct: 73303 ttccatcttgatgatgggtgg 73323
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>gb|AC144386.2| Pan troglodytes BAC clone CH251-313C12 from X, complete sequence
          Length = 202661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     ttccatcttgatgatgggtgg 53
              |||||||||||||||||||||
Sbjct: 168058 ttccatcttgatgatgggtgg 168078
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>ref|XM_845829.1| PREDICTED: Canis familiaris similar to ATP-binding cassette,
           sub-family A, member 6 isoform a, transcript variant 2
           (LOC480456), mRNA
          Length = 5369

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 189 ggatcttcctccaataatggaatgt 213
           |||||||||||||| ||||||||||
Sbjct: 452 ggatcttcctccaaaaatggaatgt 428
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>emb|Z70226.1|HSV1077H7 Human DNA sequence from clone GHc-1077H7 on chromosome X Contains part
             of the NXF2 gene for nuclear RNA export factor 2 and a
             preferentially expressed antigen in melanoma (PRAME)
             pseudogene, complete sequence
          Length = 32374

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    ttccatcttgatgatgggtgg 53
             |||||||||||||||||||||
Sbjct: 13643 ttccatcttgatgatgggtgg 13623
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>emb|AL590069.5| Human DNA sequence from clone RP11-353J17 on chromosome X, complete
              sequence
          Length = 158828

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 33     ttccatcttgatgatgggtgg 53
              |||||||||||||||||||||
Sbjct: 109516 ttccatcttgatgatgggtgg 109536
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>emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment 10/24
          Length = 294050

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 253    acgtcgactacaacgaggaaa 273
              |||||||||||||||||||||
Sbjct: 142264 acgtcgactacaacgaggaaa 142284
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>gb|AC162465.3| Mus musculus 6 BAC RP24-108G5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 203546

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 287   ggaaaatcaacctgcagaaaa 307
             |||||||||||||||||||||
Sbjct: 36577 ggaaaatcaacctgcagaaaa 36557
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 100     gccctcctcctgcttggttgg 120
               |||||||||||||||||||||
Sbjct: 7664827 gccctcctcctgcttggttgg 7664807
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1136_C11
          Length = 124827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   gccctcctcctgcttggttgg 120
             |||||||||||||||||||||
Sbjct: 88082 gccctcctcctgcttggttgg 88062
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>gb|AC158657.2| Mus musculus 6 BAC RP23-395C12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 202215

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 287    ggaaaatcaacctgcagaaaa 307
              |||||||||||||||||||||
Sbjct: 105708 ggaaaatcaacctgcagaaaa 105728
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>ref|XM_516571.1| PREDICTED: Pan troglodytes similar to COP9 signalosome subunit 8
           isoform 1 (LOC460493), mRNA
          Length = 663

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 491 aacaagtttattcccttatc 510
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>ref|NM_198189.2| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
            (Arabidopsis) (COPS8), transcript variant 2, mRNA
          Length = 2339

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  aacaagtttattcccttatc 325
            ||||||||||||||||||||
Sbjct: 1118 aacaagtttattcccttatc 1137
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>ref|NM_006710.4| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
            (Arabidopsis) (COPS8), transcript variant 1, mRNA
          Length = 2274

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  aacaagtttattcccttatc 325
            ||||||||||||||||||||
Sbjct: 1053 aacaagtttattcccttatc 1072
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>ref|XM_516177.1| PREDICTED: Pan troglodytes similar to COP9 signalosome subunit 8
           isoform 1 (LOC460043), mRNA
          Length = 936

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 568 aacaagtttattcccttatc 587
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>ref|XM_359900.1| Magnaporthe grisea 70-15 hypothetical protein (MG04877.4) partial
           mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  cactgccctcctcctgcttg 115
           ||||||||||||||||||||
Sbjct: 979 cactgccctcctcctgcttg 960
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>gb|BC003090.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
           (Arabidopsis), transcript variant 1, mRNA (cDNA clone
           MGC:1297 IMAGE:3503287), complete cds
          Length = 1637

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 577 aacaagtttattcccttatc 596
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>gb|DQ017631.1| Danio rerio TR2 mRNA, partial cds
          Length = 1740

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 390 tcatcgttactcatggtatc 409
           ||||||||||||||||||||
Sbjct: 875 tcatcgttactcatggtatc 856
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>gb|U51205.1|HSU51205 Homo sapiens COP9 signalosome subunit 8 CSN8 (CSN8) mRNA, complete
           cds
          Length = 922

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 578 aacaagtttattcccttatc 597
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>ref|NM_001020622.1| Danio rerio zgc:110672 (zgc:110672), mRNA
          Length = 2397

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 390  tcatcgttactcatggtatc 409
            ||||||||||||||||||||
Sbjct: 1116 tcatcgttactcatggtatc 1097
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>ref|XM_391588.1| Gibberella zeae PH-1 chromosome linkage group 14 predicted protein
           (FG11412.1) partial mRNA
          Length = 984

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 109 ctgcttggttggagggtgtggact 132
           |||||||| |||||||||||||||
Sbjct: 818 ctgcttggatggagggtgtggact 841
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>emb|AL929403.9| Human DNA sequence from clone RP13-438O9 on chromosome 6, complete
             sequence
          Length = 86576

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   cctgcagaaaacaagtttattccc 320
             ||||||||||| ||||||||||||
Sbjct: 60171 cctgcagaaaaaaagtttattccc 60194
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>gb|BC036499.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
            (Arabidopsis), transcript variant 1, mRNA (cDNA clone
            MGC:43256 IMAGE:5264527), complete cds
          Length = 2244

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  aacaagtttattcccttatc 325
            ||||||||||||||||||||
Sbjct: 1187 aacaagtttattcccttatc 1206
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>emb|CR857307.1| Pongo pygmaeus mRNA; cDNA DKFZp469J0132 (from clone DKFZp469J0132)
          Length = 1688

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 609 aacaagtttattcccttatc 628
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>emb|CR625642.1| full-length cDNA clone CS0DI053YE04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1611

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 572 aacaagtttattcccttatc 591
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>emb|CR624288.1| full-length cDNA clone CS0DI060YF09 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1584

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 563 aacaagtttattcccttatc 582
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>emb|CR624139.1| full-length cDNA clone CS0DF016YE07 of Fetal brain of Homo sapiens
           (human)
          Length = 933

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 568 aacaagtttattcccttatc 587
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>emb|CR621907.1| full-length cDNA clone CS0DN004YN01 of Adult brain of Homo sapiens
           (human)
          Length = 1587

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 549 aacaagtttattcccttatc 568
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>emb|CR619073.1| full-length cDNA clone CS0DK001YK07 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1603

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 568 aacaagtttattcccttatc 587
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>emb|CR612357.1| full-length cDNA clone CS0DA010YL02 of Neuroblastoma of Homo
           sapiens (human)
          Length = 1591

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 560 aacaagtttattcccttatc 579
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>emb|CR613293.1| full-length cDNA clone CS0DL011YG15 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1569

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 578 aacaagtttattcccttatc 597
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>emb|CR611203.1| full-length cDNA clone CS0DJ014YC12 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1603

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 563 aacaagtttattcccttatc 582
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>emb|CR607837.1| full-length cDNA clone CS0DF021YF24 of Fetal brain of Homo sapiens
           (human)
          Length = 1577

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 585 aacaagtttattcccttatc 604
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>emb|CR605123.1| full-length cDNA clone CS0DI002YO05 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1572

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 563 aacaagtttattcccttatc 582
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>emb|CR601867.1| full-length cDNA clone CS0DI081YA14 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1564

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 568 aacaagtttattcccttatc 587
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>emb|CR595867.1| full-length cDNA clone CS0DG002YI15 of B cells (Ramos cell line) of
           Homo sapiens (human)
          Length = 1576

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 542 aacaagtttattcccttatc 561
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>emb|CR595044.1| full-length cDNA clone CS0DN005YI22 of Adult brain of Homo sapiens
           (human)
          Length = 1591

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 578 aacaagtttattcccttatc 597
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>emb|CR594862.1| full-length cDNA clone CS0DI061YE09 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1578

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 563 aacaagtttattcccttatc 582
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>emb|CR593683.1| full-length cDNA clone CS0DI009YL11 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1587

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 568 aacaagtttattcccttatc 587
to top
>emb|CR593384.1| full-length cDNA clone CS0DI067YA06 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 992

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 604 aacaagtttattcccttatc 623
to top
>emb|CR456994.1| Homo sapiens full open reading frame cDNA clone RZPDo834E075D for
           gene COPS8, COP9 constitutive photomorphogenic homolog
           subunit 8 (Arabidopsis); complete cds, incl. stopcodon
          Length = 630

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 529 aacaagtttattcccttatc 548
to top
>gb|AC092416.3| Homo sapiens chromosome 3 clone RP11-89A12, complete sequence
          Length = 23515

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   aacaagtttattcccttatc 325
             ||||||||||||||||||||
Sbjct: 18814 aacaagtttattcccttatc 18795
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>gb|BC095365.1| Danio rerio zgc:110672, mRNA (cDNA clone MGC:110672 IMAGE:7165974),
            complete cds
          Length = 2397

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 390  tcatcgttactcatggtatc 409
            ||||||||||||||||||||
Sbjct: 1116 tcatcgttactcatggtatc 1097
to top
>ref|NG_003103.1| Homo sapiens COP9 pseudogene (LOC375350) on chromosome 3
          Length = 982

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 641 aacaagtttattcccttatc 660
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>gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, complete sequence
          Length = 77730

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 306   aacaagtttattcccttatc 325
             ||||||||||||||||||||
Sbjct: 60929 aacaagtttattcccttatc 60948
to top
>gb|AE005672.2| Streptococcus pneumoniae TIGR4, complete genome
          Length = 2160842

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 532     tggacgtcctgcacgtaatagcga 555
               ||||||| ||||||||||||||||
Sbjct: 1168673 tggacgtgctgcacgtaatagcga 1168650
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>emb|AL845457.16| Mouse DNA sequence from clone RP23-34E24 on chromosome 2, complete
              sequence
          Length = 221009

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     ctttcagtgttagtcatctg 95
              ||||||||||||||||||||
Sbjct: 220701 ctttcagtgttagtcatctg 220682
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>gb|BC080617.1| Homo sapiens COP9 constitutive photomorphogenic homolog subunit 8
           (Arabidopsis), transcript variant 1, mRNA (cDNA clone
           MGC:99545 IMAGE:6252628), complete cds
          Length = 961

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 306 aacaagtttattcccttatc 325
           ||||||||||||||||||||
Sbjct: 549 aacaagtttattcccttatc 568
to top
>emb|BX640593.8| Zebrafish DNA sequence from clone DKEY-183C16 in linkage group 4,
             complete sequence
          Length = 218192

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 390   tcatcgttactcatggtatc 409
             ||||||||||||||||||||
Sbjct: 45883 tcatcgttactcatggtatc 45864
to top
>gb|U40942.2| Caenorhabditis elegans cosmid K02E10, complete sequence
          Length = 38434

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  gaaaacaagtttattccctt 322
            ||||||||||||||||||||
Sbjct: 2186 gaaaacaagtttattccctt 2167
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>emb|AL844573.4| Mouse DNA sequence from clone RP23-277B16 on chromosome 2, complete
            sequence
          Length = 83137

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   ctttcagtgttagtcatctg 95
            ||||||||||||||||||||
Sbjct: 1692 ctttcagtgttagtcatctg 1673
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>emb|AL807251.2| Human DNA sequence from clone RP11-425M20 on chromosome 6, complete
             sequence
          Length = 40767

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 297   cctgcagaaaacaagtttattccc 320
             ||||||||||| ||||||||||||
Sbjct: 14378 cctgcagaaaaaaagtttattccc 14401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,006,791
Number of Sequences: 3902068
Number of extensions: 5006791
Number of successful extensions: 90138
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89978
Number of HSP's gapped (non-prelim): 160
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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