ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal38p16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_469892.1| Oryza sativa (japonica cultivar-group), mRNA 281 1e-72
2dbj|AK069581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
3gb|AY104271.1| Zea mays PCO118632 mRNA sequence 220 4e-54
4dbj|AK120096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 84 6e-13
6gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 84 6e-13
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 84 6e-13
8dbj|AK058692.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
10dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
11gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete seq... 56 1e-04
12gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 42 2.2
13gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequ... 42 2.2
14gb|AE001439.1| Helicobacter pylori J99, complete genome 42 2.2
15gb|AC135409.3| Rattus norvegicus 8 BAC CH230-416D7 (Children's H... 40 8.7
16gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque... 40 8.7
17ref|XM_421962.1| PREDICTED: Gallus gallus similar to Abl interac... 40 8.7
18ref|XM_676545.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.7
19gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, compl... 40 8.7
20gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complet... 40 8.7
21gb|AC087900.19| Mus musculus strain C57BL/6J clone rp23-171i6 ma... 40 8.7
22gb|AY126435.1| Drosophila dunni dunni yellow (yellow) gene, part... 40 8.7
23emb|X82644.1|PAX82644 Pseudomonas aeruginosa pchD, pchC, pchB an... 40 8.7
24gb|AC131565.1| Homo sapiens chromosome 5 clone RP11-1273L8, comp... 40 8.7
25gb|AC114959.2| Homo sapiens chromosome 5 clone RP11-170L13, comp... 40 8.7
26gb|AC011368.5| Homo sapiens chromosome 5 clone CTB-104K23, compl... 40 8.7
27gb|AC011351.5| Homo sapiens chromosome 5 clone CTC-325N22, compl... 40 8.7
28gb|AC099476.6| Rattus norvegicus BAC CH230-159G8 (Children's Ho... 40 8.7
29emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in ... 40 8.7
30gb|AC153136.3| Mus musculus BAC clone RP24-191P11 from chromosom... 40 8.7
31gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complet... 40 8.7
32gb|AE004840.1| Pseudomonas aeruginosa PAO1, section 401 of 529 o... 40 8.7
33gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete ... 40 8.7
34emb|X80301.1|NTAXI1G N.tabacum axi 1 gene 40 8.7
35gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosom... 40 8.7
36gb|AE000511.1| Helicobacter pylori 26695, complete genome 40 8.7
37gb|AC122315.5| Mus musculus BAC clone RP23-302P6 from 10, comple... 40 8.7
38gb|L03208.1|TOBAIGA Nicotiana tabacum mRNA sequence 40 8.7

>ref|XM_469892.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1819

 Score =  281 bits (142), Expect = 1e-72
 Identities = 408/496 (82%), Gaps = 3/496 (0%)
 Strand = Plus / Plus

                                                                        
Query: 142  ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
            |||||||||||  |||||||| |||| ||| |||| |||||||||| |  || |  ||||
Sbjct: 805  ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 864

                                                                        
Query: 202  aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
            | |||||    |||||| || ||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 865  aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 921

                                                                        
Query: 262  cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
             |||| ||||||||||| || ||| |  | | ||| |   ||||||||||  ||||||||
Sbjct: 922  tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 981

                                                                        
Query: 322  ccttcgaaatcaatgtatccaacatttgatgttggtgaccggattctcgccgagagggtt 381
            || || || || |||||||| ||||| |||||||||||||| || || ||||| | ||||
Sbjct: 982  ccatccaagtctatgtatccgacattcgatgttggtgaccgaatccttgccgacaaggtt 1041

                                                                        
Query: 382  tcatatattttccgggagcctcaagttttggacattgtgatcttccgtgcacctctagtc 441
            |||||  |||||||||||||| |  ||||||||||||||||||||||||| || | ||| 
Sbjct: 1042 tcatacgttttccgggagcctaatattttggacattgtgatcttccgtgcccccccagtt 1101

                                                                        
Query: 442  cttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaaggga 501
            || ||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| 
Sbjct: 1102 ctgcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggt 1161

                                                                        
Query: 502  ggggacatcgttgaagtgactgatggtcaattattagttaacggagtagtccaagatgag 561
            ||||| | |||||||||   ||||||| ||||||| ||||| ||||||||||| ||||||
Sbjct: 1162 ggggataccgttgaagtacgtgatggtaaattattggttaatggagtagtccaggatgag 1221

                                                                        
Query: 562  gactttgtgcttgagccacccgattatgaaatggatccagtgagtgtgcctgaaggctat 621
            || |||||||| ||||||| | | ||||||||||||| ||||| ||| ||| |||| || 
Sbjct: 1222 gaatttgtgctggagccactcaactatgaaatggatcaagtgactgttcctcaaggttac 1281

                            
Query: 622  gtgtttgtgctggggg 637
            ||||||||||||||||
Sbjct: 1282 gtgtttgtgctggggg 1297



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>dbj|AK069581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021P11, full
            insert sequence
          Length = 2213

 Score =  281 bits (142), Expect = 1e-72
 Identities = 408/496 (82%), Gaps = 3/496 (0%)
 Strand = Plus / Plus

                                                                        
Query: 142  ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
            |||||||||||  |||||||| |||| ||| |||| |||||||||| |  || |  ||||
Sbjct: 1102 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 1161

                                                                        
Query: 202  aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
            | |||||    |||||| || ||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 1162 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 1218

                                                                        
Query: 262  cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
             |||| ||||||||||| || ||| |  | | ||| |   ||||||||||  ||||||||
Sbjct: 1219 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 1278

                                                                        
Query: 322  ccttcgaaatcaatgtatccaacatttgatgttggtgaccggattctcgccgagagggtt 381
            || || || || |||||||| ||||| |||||||||||||| || || ||||| | ||||
Sbjct: 1279 ccatccaagtctatgtatccgacattcgatgttggtgaccgaatccttgccgacaaggtt 1338

                                                                        
Query: 382  tcatatattttccgggagcctcaagttttggacattgtgatcttccgtgcacctctagtc 441
            |||||  |||||||||||||| |  ||||||||||||||||||||||||| || | ||| 
Sbjct: 1339 tcatacgttttccgggagcctaatattttggacattgtgatcttccgtgcccccccagtt 1398

                                                                        
Query: 442  cttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaaggga 501
            || ||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| 
Sbjct: 1399 ctgcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggt 1458

                                                                        
Query: 502  ggggacatcgttgaagtgactgatggtcaattattagttaacggagtagtccaagatgag 561
            ||||| | |||||||||   ||||||| ||||||| ||||| ||||||||||| ||||||
Sbjct: 1459 ggggataccgttgaagtacgtgatggtaaattattggttaatggagtagtccaggatgag 1518

                                                                        
Query: 562  gactttgtgcttgagccacccgattatgaaatggatccagtgagtgtgcctgaaggctat 621
            || |||||||| ||||||| | | ||||||||||||| ||||| ||| ||| |||| || 
Sbjct: 1519 gaatttgtgctggagccactcaactatgaaatggatcaagtgactgttcctcaaggttac 1578

                            
Query: 622  gtgtttgtgctggggg 637
            ||||||||||||||||
Sbjct: 1579 gtgtttgtgctggggg 1594



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>gb|AY104271.1| Zea mays PCO118632 mRNA sequence
          Length = 1060

 Score =  220 bits (111), Expect = 4e-54
 Identities = 256/305 (83%)
 Strand = Plus / Plus

                                                                       
Query: 214 tggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtccttgctgctgtg 273
           ||||| || ||||||||||  || ||||| |||||||| ||||| ||| |||| ||||||
Sbjct: 694 tggctctcaaggtgggtganctcatgctcagatgatgcgaagactgtctttgccgctgtg 753

                                                                       
Query: 274 actgtacctctgctccacaaatcctatctagctgagccgcggtccatcccttcgaaatca 333
           || || || |||||| | ||||| |  |||||||||||| |||||||||| || |  |||
Sbjct: 754 accgtgccactgctctataaatcatccctagctgagccgaggtccatcccatccaggtca 813

                                                                       
Query: 334 atgtatccaacatttgatgttggtgaccggattctcgccgagagggtttcatatattttc 393
           ||||  ||||| |||||||||||||| ||||| || || |||| | ||||| | ||||||
Sbjct: 814 atgttcccaacgtttgatgttggtgatcggatccttgctgagaagatttcanacattttc 873

                                                                       
Query: 394 cgggagcctcaagttttggacattgtgatcttccgtgcacctctagtccttcaggcattg 453
           ||||| ||  || || |||||||||||||||| || ||||||| ||||||||||||||||
Sbjct: 874 cgggaaccggaaattctggacattgtgatctttcgggcacctccagtccttcaggcattg 933

                                                                       
Query: 454 ggctacagctcaagtgatgtgttcatcaagagaattgtggccaagggaggggacatcgtt 513
           ||||||||| || |||||||||| ||||||||| ||||||| ||||| ||||| ||||||
Sbjct: 934 ggctacagcgcaggtgatgtgtttatcaagagagttgtggctaagggtggggatatcgtt 993

                
Query: 514 gaagt 518
           |||||
Sbjct: 994 gaagt 998



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>dbj|AK120096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022A21, full
            insert sequence
          Length = 1860

 Score =  161 bits (81), Expect = 3e-36
 Identities = 267/329 (81%)
 Strand = Plus / Plus

                                                                        
Query: 307  gagccgcggtccatcccttcgaaatcaatgtatccaacatttgatgttggtgaccggatt 366
            |||||| |||||||||| || || || ||||| || || || ||||||||||||||||||
Sbjct: 1031 gagccgaggtccatcccgtccaagtccatgtacccgaccttcgatgttggtgaccggatt 1090

                                                                        
Query: 367  ctcgccgagagggtttcatatattttccgggagcctcaagttttggacattgtgatcttc 426
            |||||||||| ||| || || || |||||||||||  || | ||||||||||||||||||
Sbjct: 1091 ctcgccgagaaggtctcgtacatattccgggagccggaaatcttggacattgtgatcttc 1150

                                                                        
Query: 427  cgtgcacctctagtccttcaggcattgggctacagctcaagtgatgtgttcatcaagaga 486
            |||||||| | ||  |||||||  | ||||||||||||  ||||||| ||||||||||||
Sbjct: 1151 cgtgcaccaccagctcttcaggattggggctacagctcgggtgatgttttcatcaagaga 1210

                                                                        
Query: 487  attgtggccaagggaggggacatcgttgaagtgactgatggtcaattattagttaacgga 546
             |||||||||||| ||| |||   || |||||   ||||||  | ||  | || ||||||
Sbjct: 1211 gttgtggccaaggcaggcgactatgtcgaagttcgtgatggcaagttgattgtcaacgga 1270

                                                                        
Query: 547  gtagtccaagatgaggactttgtgcttgagccacccgattatgaaatggatccagtgagt 606
            |||||||| |||||||| |||||| | ||||| | | |||| || ||||| ||  ||  |
Sbjct: 1271 gtagtccaggatgaggaatttgtgttggagcctcacaattacgagatggaacccatgctt 1330

                                         
Query: 607  gtgcctgaaggctatgtgtttgtgctggg 635
            || || ||||| |||||||||||||||||
Sbjct: 1331 gttccagaaggttatgtgtttgtgctggg 1359



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 522      tgatggtcaattattagttaacggagtagtccaagatgaggactttgtgcttgagccacc 581
                ||||||| ||||||| ||||| ||||||||||| |||||||| |||||||| ||||||| 
Sbjct: 31379327 tgatggtaaattattggttaatggagtagtccaggatgaggaatttgtgctggagccact 31379268

                                      
Query: 582      cgattatgaaatggatccagtg 603
                | | ||||||||||||| ||||
Sbjct: 31379267 caactatgaaatggatcaagtg 31379246



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 176/221 (79%), Gaps = 3/221 (1%)
 Strand = Plus / Minus

                                                                            
Query: 142      ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
                |||||||||||  |||||||| |||| ||| |||| |||||||||| |  || |  ||||
Sbjct: 31379986 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 31379927

                                                                            
Query: 202      aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
                | |||||    |||||| || ||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 31379926 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 31379870

                                                                            
Query: 262      cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
                 |||| ||||||||||| || ||| |  | | ||| |   ||||||||||  ||||||||
Sbjct: 31379869 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 31379810

                                                         
Query: 322      ccttcgaaatcaatgtatccaacatttgatgttggtgaccg 362
                || || || || |||||||| ||||| ||||||||||||||
Sbjct: 31379809 ccatccaagtctatgtatccgacattcgatgttggtgaccg 31379769



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                            
Query: 443      ttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaagggag 502
                ||||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| |
Sbjct: 31379525 ttcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggtg 31379466

                                
Query: 503      gggacatcgttgaagt 518
                |||| | |||||||||
Sbjct: 31379465 gggataccgttgaagt 31379450



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 378      ggtttcatatattttccgggagcctcaagttttggacattgtgatcttccgtgc 431
                |||||||||  |||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 31379670 ggtttcatacgttttccgggagcctaatattttggacattgtgatcttccgtgc 31379617



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 16       ggtgcggcggctgcccccgccaag 39
                |||||||||||||||||| |||||
Sbjct: 24548643 ggtgcggcggctgccccctccaag 24548666



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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
              sequence
          Length = 159091

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Plus

                                                                          
Query: 522    tgatggtcaattattagttaacggagtagtccaagatgaggactttgtgcttgagccacc 581
              ||||||| ||||||| ||||| ||||||||||| |||||||| |||||||| ||||||| 
Sbjct: 116473 tgatggtaaattattggttaatggagtagtccaggatgaggaatttgtgctggagccact 116532

                                    
Query: 582    cgattatgaaatggatccagtg 603
              | | ||||||||||||| ||||
Sbjct: 116533 caactatgaaatggatcaagtg 116554



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 176/221 (79%), Gaps = 3/221 (1%)
 Strand = Plus / Plus

                                                                          
Query: 142    ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
              |||||||||||  |||||||| |||| ||| |||| |||||||||| |  || |  ||||
Sbjct: 115814 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 115873

                                                                          
Query: 202    aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
              | |||||    |||||| || ||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 115874 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 115930

                                                                          
Query: 262    cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
               |||| ||||||||||| || ||| |  | | ||| |   ||||||||||  ||||||||
Sbjct: 115931 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 115990

                                                       
Query: 322    ccttcgaaatcaatgtatccaacatttgatgttggtgaccg 362
              || || || || |||||||| ||||| ||||||||||||||
Sbjct: 115991 ccatccaagtctatgtatccgacattcgatgttggtgaccg 116031



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                          
Query: 443    ttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaagggag 502
              ||||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| |
Sbjct: 116275 ttcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggtg 116334

                              
Query: 503    gggacatcgttgaagt 518
              |||| | |||||||||
Sbjct: 116335 gggataccgttgaagt 116350



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                    
Query: 378    ggtttcatatattttccgggagcctcaagttttggacattgtgatcttccgtgc 431
              |||||||||  |||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 116130 ggtttcatacgttttccgggagcctaatattttggacattgtgatcttccgtgc 116183



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 72/82 (87%)
 Strand = Plus / Minus

                                                                            
Query: 522      tgatggtcaattattagttaacggagtagtccaagatgaggactttgtgcttgagccacc 581
                ||||||| ||||||| ||||| ||||||||||| |||||||| |||||||| ||||||| 
Sbjct: 31469843 tgatggtaaattattggttaatggagtagtccaggatgaggaatttgtgctggagccact 31469784

                                      
Query: 582      cgattatgaaatggatccagtg 603
                | | ||||||||||||| ||||
Sbjct: 31469783 caactatgaaatggatcaagtg 31469762



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 176/221 (79%), Gaps = 3/221 (1%)
 Strand = Plus / Minus

                                                                            
Query: 142      ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
                |||||||||||  |||||||| |||| ||| |||| |||||||||| |  || |  ||||
Sbjct: 31470502 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 31470443

                                                                            
Query: 202      aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
                | |||||    |||||| || ||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 31470442 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 31470386

                                                                            
Query: 262      cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
                 |||| ||||||||||| || ||| |  | | ||| |   ||||||||||  ||||||||
Sbjct: 31470385 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 31470326

                                                         
Query: 322      ccttcgaaatcaatgtatccaacatttgatgttggtgaccg 362
                || || || || |||||||| ||||| ||||||||||||||
Sbjct: 31470325 ccatccaagtctatgtatccgacattcgatgttggtgaccg 31470285



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                            
Query: 443      ttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaagggag 502
                ||||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| |
Sbjct: 31470041 ttcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggtg 31469982

                                
Query: 503      gggacatcgttgaagt 518
                |||| | |||||||||
Sbjct: 31469981 gggataccgttgaagt 31469966



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 378      ggtttcatatattttccgggagcctcaagttttggacattgtgatcttccgtgc 431
                |||||||||  |||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 31470186 ggtttcatacgttttccgggagcctaatattttggacattgtgatcttccgtgc 31470133



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 16       ggtgcggcggctgcccccgccaag 39
                |||||||||||||||||| |||||
Sbjct: 24466112 ggtgcggcggctgccccctccaag 24466135



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>dbj|AK058692.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-B05, full
            insert sequence
          Length = 1522

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 176/221 (79%), Gaps = 3/221 (1%)
 Strand = Plus / Plus

                                                                        
Query: 142  ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
            |||||||||||  |||||||| |||| ||| |||| |||||||||| |  || |  ||||
Sbjct: 1152 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 1211

                                                                        
Query: 202  aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
            | |||||    |||||| || ||||||||||  ||||| ||||||||||| ||||| |||
Sbjct: 1212 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 1268

                                                                        
Query: 262  cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
             |||| ||||||||||| || ||| |  | | ||| |   ||||||||||  ||||||||
Sbjct: 1269 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 1328

                                                     
Query: 322  ccttcgaaatcaatgtatccaacatttgatgttggtgaccg 362
            || || || || |||||||| ||||| ||||||||||||||
Sbjct: 1329 ccatccaagtctatgtatccgacattcgatgttggtgaccg 1369



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                  
Query: 378  ggtttcatatattttccgggagcctcaagttttggacattgtgatcttccgtgc 431
            |||||||||  |||||||||||||| |  |||||||||||||||||||||||||
Sbjct: 1468 ggtttcatacgttttccgggagcctaatattttggacattgtgatcttccgtgc 1521



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                            
Query: 307      gagccgcggtccatcccttcgaaatcaatgtatccaacatttgatgttggtgaccggatt 366
                |||||| |||||||||| || || || ||||| || || || ||||||||||||||||||
Sbjct: 16950015 gagccgaggtccatcccgtccaagtccatgtacccgaccttcgatgttggtgaccggatt 16949956

                          
Query: 367      ctcgccgaga 376
                ||||||||||
Sbjct: 16949955 ctcgccgaga 16949946



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                               
Query: 453      gggctacagctcaagtgatgtgttcatcaagagaattgtggccaagg 499
                ||||||||||||  ||||||| |||||||||||| ||||||||||||
Sbjct: 16949689 gggctacagctcgggtgatgttttcatcaagagagttgtggccaagg 16949643



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 391      ttccgggagcctcaagttttggacattgtgatcttccgtgcacc 434
                |||||||||||  || | ||||||||||||||||||||||||||
Sbjct: 16949842 ttccgggagccggaaatcttggacattgtgatcttccgtgcacc 16949799



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 541      aacggagtagtccaagatgaggactttgtg 570
                |||||||||||||| |||||||| ||||||
Sbjct: 16949486 aacggagtagtccaggatgaggaatttgtg 16949457



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>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0488D02
          Length = 154537

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 61/70 (87%)
 Strand = Plus / Minus

                                                                         
Query: 307   gagccgcggtccatcccttcgaaatcaatgtatccaacatttgatgttggtgaccggatt 366
             |||||| |||||||||| || || || ||||| || || || ||||||||||||||||||
Sbjct: 79828 gagccgaggtccatcccgtccaagtccatgtacccgaccttcgatgttggtgaccggatt 79769

                       
Query: 367   ctcgccgaga 376
             ||||||||||
Sbjct: 79768 ctcgccgaga 79759



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 453   gggctacagctcaagtgatgtgttcatcaagagaattgtggccaagg 499
             ||||||||||||  ||||||| |||||||||||| ||||||||||||
Sbjct: 79502 gggctacagctcgggtgatgttttcatcaagagagttgtggccaagg 79456



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 391   ttccgggagcctcaagttttggacattgtgatcttccgtgcacc 434
             |||||||||||  || | ||||||||||||||||||||||||||
Sbjct: 79655 ttccgggagccggaaatcttggacattgtgatcttccgtgcacc 79612



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 541   aacggagtagtccaagatgaggactttgtg 570
             |||||||||||||| |||||||| ||||||
Sbjct: 79299 aacggagtagtccaggatgaggaatttgtg 79270



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>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence
          Length = 105215

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                  
Query: 449    cattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaaggg 500
              ||||||||||||||||| |||||||||| || | |||| ||||||| |||||
Sbjct: 101788 cattgggctacagctcatgtgatgtgttgattaggagagttgtggctaaggg 101839



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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 442     cttcaggcattgggctacagc 462
               |||||||||||||||||||||
Sbjct: 1724433 cttcaggcattgggctacagc 1724413



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>gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequence
          Length = 208592

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 604   agtgtgcctgaaggctatgtg 624
             |||||||||||||||||||||
Sbjct: 46680 agtgtgcctgaaggctatgtg 46660



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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     cggcgcggtggctgcccctac 89
              |||||||||||||||||||||
Sbjct: 392811 cggcgcggtggctgcccctac 392791



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>gb|AC135409.3| Rattus norvegicus 8 BAC CH230-416D7 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 231716

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tagcccctggtgctgctggg 153
              ||||||||||||||||||||
Sbjct: 227621 tagcccctggtgctgctggg 227602



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>gb|AC147427.2| Oryza sativa chromosome 3  B1394A07 genomic sequence, complete sequence
          Length = 175704

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 16    ggtgcggcggctgcccccgccaag 39
             |||||||||||||||||| |||||
Sbjct: 87217 ggtgcggcggctgccccctccaag 87194



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>ref|XM_421962.1| PREDICTED: Gallus gallus similar to Abl interactor 2 (LOC424108),
           mRNA
          Length = 1742

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 2   cggcacgagggagcggtgcggcgg 25
           |||| |||||||||||||||||||
Sbjct: 84  cggcgcgagggagcggtgcggcgg 107



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>ref|XM_676545.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8368.2), mRNA
          Length = 918

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 204 gaggactagctggctgtcgaggtgggtg 231
           ||||||||||||||||||| || |||||
Sbjct: 642 gaggactagctggctgtcggggagggtg 615



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>gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, complete sequence
          Length = 184961

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 262  cttgctgctgtgactgtacctctg 285
            |||||||||||||||| |||||||
Sbjct: 4349 cttgctgctgtgactgaacctctg 4372



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>gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complete sequence
          Length = 211680

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    ctgctggggtggtgagacag 165
              ||||||||||||||||||||
Sbjct: 125608 ctgctggggtggtgagacag 125627



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>gb|AC087900.19| Mus musculus strain C57BL/6J clone rp23-171i6 map 19, complete sequence
          Length = 195066

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 262    cttgctgctgtgactgtacctctg 285
              |||||||||||||||| |||||||
Sbjct: 106407 cttgctgctgtgactgaacctctg 106430



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>gb|AY126435.1| Drosophila dunni dunni yellow (yellow) gene, partial cds
          Length = 7252

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 282  tctgctccacaaatcctatc 301
            ||||||||||||||||||||
Sbjct: 4025 tctgctccacaaatcctatc 4006



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>emb|X82644.1|PAX82644 Pseudomonas aeruginosa pchD, pchC, pchB and pchA genes
          Length = 4662

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  agccgcggtccatcccttcg 327
            ||||||||||||||||||||
Sbjct: 4147 agccgcggtccatcccttcg 4128



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>gb|AC131565.1| Homo sapiens chromosome 5 clone RP11-1273L8, complete sequence
          Length = 181283

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 478   atcaagagaattgtggccaa 497
             ||||||||||||||||||||
Sbjct: 29545 atcaagagaattgtggccaa 29564



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>gb|AC114959.2| Homo sapiens chromosome 5 clone RP11-170L13, complete sequence
          Length = 163805

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    atcaagagaattgtggccaa 497
              ||||||||||||||||||||
Sbjct: 152921 atcaagagaattgtggccaa 152902



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>gb|AC011368.5| Homo sapiens chromosome 5 clone CTB-104K23, complete sequence
          Length = 113582

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    atcaagagaattgtggccaa 497
              ||||||||||||||||||||
Sbjct: 105138 atcaagagaattgtggccaa 105119



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>gb|AC011351.5| Homo sapiens chromosome 5 clone CTC-325N22, complete sequence
          Length = 176804

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   atcaagagaattgtggccaa 497
             ||||||||||||||||||||
Sbjct: 54983 atcaagagaattgtggccaa 54964



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>gb|AC099476.6| Rattus norvegicus  BAC CH230-159G8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 208229

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 288   ccacaaatcctatctagctg 307
             ||||||||||||||||||||
Sbjct: 88933 ccacaaatcctatctagctg 88952



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>emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in linkage group 2,
             complete sequence
          Length = 213323

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    cattgtttggtagtagcggc 72
             ||||||||||||||||||||
Sbjct: 13656 cattgtttggtagtagcggc 13675



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>gb|AC153136.3| Mus musculus BAC clone RP24-191P11 from chromosome 10, complete sequence
          Length = 199200

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 139    cctggtgctgctggggtggtgaga 162
              ||||||| ||||||||||||||||
Sbjct: 121735 cctggtgttgctggggtggtgaga 121712



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>gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complete sequence
          Length = 186896

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 585   ttatgaaatggatccagtga 604
             ||||||||||||||||||||
Sbjct: 94153 ttatgaaatggatccagtga 94134



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>gb|AE004840.1| Pseudomonas aeruginosa PAO1, section 401 of 529 of the complete
            genome
          Length = 10481

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  agccgcggtccatcccttcg 327
            ||||||||||||||||||||
Sbjct: 5135 agccgcggtccatcccttcg 5116



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>gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete sequence
          Length = 171949

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 601   gtgagtgtgcctgaaggctatgtg 624
             |||||||| |||||||||||||||
Sbjct: 44858 gtgagtgttcctgaaggctatgtg 44835



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>emb|X80301.1|NTAXI1G N.tabacum axi 1 gene
          Length = 6650

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 511  gttgaagtgactgatggtca 530
            ||||||||||||||||||||
Sbjct: 4606 gttgaagtgactgatggtca 4625



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>gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosome ul, complete
             sequence
          Length = 196838

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    cggtgcggcggctgcccccg 34
             ||||||||||||||||||||
Sbjct: 33833 cggtgcggcggctgcccccg 33852



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>gb|AE000511.1| Helicobacter pylori 26695, complete genome
          Length = 1667867

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 70      ggcgcggtggctgcccctac 89
               ||||||||||||||||||||
Sbjct: 1123584 ggcgcggtggctgcccctac 1123603



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>gb|AC122315.5| Mus musculus BAC clone RP23-302P6 from 10, complete sequence
          Length = 197288

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 139    cctggtgctgctggggtggtgaga 162
              ||||||| ||||||||||||||||
Sbjct: 168059 cctggtgttgctggggtggtgaga 168082



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>gb|L03208.1|TOBAIGA Nicotiana tabacum mRNA sequence
          Length = 2188

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 511  gttgaagtgactgatggtca 530
            ||||||||||||||||||||
Sbjct: 1824 gttgaagtgactgatggtca 1843


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,471,631
Number of Sequences: 3902068
Number of extensions: 5471631
Number of successful extensions: 97232
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96918
Number of HSP's gapped (non-prelim): 313
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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