No.
Definition
Score (bits)
E Value
1 ref|XM_469892.1| Oryza sativa (japonica cultivar-group), mRNA
281
1e-72
2 dbj|AK069581.1| Oryza sativa (japonica cultivar-group) cDNA clon...
281
1e-72
3 gb|AY104271.1| Zea mays PCO118632 mRNA sequence
220
4e-54
4 dbj|AK120096.1| Oryza sativa (japonica cultivar-group) cDNA clon...
161
3e-36
5 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
84
6e-13
6 gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom...
84
6e-13
7 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
84
6e-13
8 dbj|AK058692.1| Oryza sativa (japonica cultivar-group) cDNA clon...
78
4e-11
9 dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
10 dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic D...
68
4e-08
11 gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete seq...
56
1e-04
12 gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
42
2.2
13 gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequ...
42
2.2
14 gb|AE001439.1| Helicobacter pylori J99, complete genome
42
2.2
15 gb|AC135409.3| Rattus norvegicus 8 BAC CH230-416D7 (Children's H...
40
8.7
16 gb|AC147427.2| Oryza sativa chromosome 3 B1394A07 genomic seque...
40
8.7
17 ref|XM_421962.1| PREDICTED: Gallus gallus similar to Abl interac...
40
8.7
18 ref|XM_676545.1| Aspergillus nidulans FGSC A4 hypothetical prote...
40
8.7
19 gb|AC129021.4| Mus musculus BAC clone RP23-312H15 from 16, compl...
40
8.7
20 gb|AC019043.8| Homo sapiens BAC clone RP11-11B21 from 7, complet...
40
8.7
21 gb|AC087900.19| Mus musculus strain C57BL/6J clone rp23-171i6 ma...
40
8.7
22 gb|AY126435.1| Drosophila dunni dunni yellow (yellow) gene, part...
40
8.7
23 emb|X82644.1|PAX82644 Pseudomonas aeruginosa pchD, pchC, pchB an...
40
8.7
24 gb|AC131565.1| Homo sapiens chromosome 5 clone RP11-1273L8, comp...
40
8.7
25 gb|AC114959.2| Homo sapiens chromosome 5 clone RP11-170L13, comp...
40
8.7
26 gb|AC011368.5| Homo sapiens chromosome 5 clone CTB-104K23, compl...
40
8.7
27 gb|AC011351.5| Homo sapiens chromosome 5 clone CTC-325N22, compl...
40
8.7
28 gb|AC099476.6| Rattus norvegicus BAC CH230-159G8 (Children's Ho...
40
8.7
29 emb|BX510360.8| Zebrafish DNA sequence from clone DKEY-265A7 in ...
40
8.7
30 gb|AC153136.3| Mus musculus BAC clone RP24-191P11 from chromosom...
40
8.7
31 gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complet...
40
8.7
32 gb|AE004840.1| Pseudomonas aeruginosa PAO1, section 401 of 529 o...
40
8.7
33 gb|AC012531.11|AC012531 Homo sapiens, clone RP11-83K1, complete ...
40
8.7
34 emb|X80301.1|NTAXI1G N.tabacum axi 1 gene
40
8.7
35 gb|AC171013.3| Gallus gallus BAC clone CH261-71N5 from chromosom...
40
8.7
36 gb|AE000511.1| Helicobacter pylori 26695, complete genome
40
8.7
37 gb|AC122315.5| Mus musculus BAC clone RP23-302P6 from 10, comple...
40
8.7
38 gb|L03208.1|TOBAIGA Nicotiana tabacum mRNA sequence
40
8.7
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 522 tgatggtcaattattagttaacggagtagtccaagatgaggactttgtgcttgagccacc 581
||||||| ||||||| ||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 31379327 tgatggtaaattattggttaatggagtagtccaggatgaggaatttgtgctggagccact 31379268
Query: 582 cgattatgaaatggatccagtg 603
| | ||||||||||||| ||||
Sbjct: 31379267 caactatgaaatggatcaagtg 31379246
Score = 77.8 bits (39), Expect = 4e-11
Identities = 176/221 (79%), Gaps = 3/221 (1%)
Strand = Plus / Minus
Query: 142 ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
||||||||||| |||||||| |||| ||| |||| |||||||||| | || | ||||
Sbjct: 31379986 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 31379927
Query: 202 aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
| ||||| |||||| || |||||||||| ||||| ||||||||||| ||||| |||
Sbjct: 31379926 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 31379870
Query: 262 cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
|||| ||||||||||| || ||| | | | ||| | |||||||||| ||||||||
Sbjct: 31379869 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 31379810
Query: 322 ccttcgaaatcaatgtatccaacatttgatgttggtgaccg 362
|| || || || |||||||| ||||| ||||||||||||||
Sbjct: 31379809 ccatccaagtctatgtatccgacattcgatgttggtgaccg 31379769
Score = 71.9 bits (36), Expect = 2e-09
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 443 ttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaagggag 502
||||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| |
Sbjct: 31379525 ttcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggtg 31379466
Query: 503 gggacatcgttgaagt 518
|||| | |||||||||
Sbjct: 31379465 gggataccgttgaagt 31379450
Score = 67.9 bits (34), Expect = 4e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 378 ggtttcatatattttccgggagcctcaagttttggacattgtgatcttccgtgc 431
||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 31379670 ggtttcatacgttttccgggagcctaatattttggacattgtgatcttccgtgc 31379617
Score = 40.1 bits (20), Expect = 8.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 ggtgcggcggctgcccccgccaag 39
|||||||||||||||||| |||||
Sbjct: 24548643 ggtgcggcggctgccccctccaag 24548666
>gb|AC099043.6 | Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
sequence
Length = 159091
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Plus
Query: 522 tgatggtcaattattagttaacggagtagtccaagatgaggactttgtgcttgagccacc 581
||||||| ||||||| ||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 116473 tgatggtaaattattggttaatggagtagtccaggatgaggaatttgtgctggagccact 116532
Query: 582 cgattatgaaatggatccagtg 603
| | ||||||||||||| ||||
Sbjct: 116533 caactatgaaatggatcaagtg 116554
Score = 77.8 bits (39), Expect = 4e-11
Identities = 176/221 (79%), Gaps = 3/221 (1%)
Strand = Plus / Plus
Query: 142 ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
||||||||||| |||||||| |||| ||| |||| |||||||||| | || | ||||
Sbjct: 115814 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 115873
Query: 202 aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
| ||||| |||||| || |||||||||| ||||| ||||||||||| ||||| |||
Sbjct: 115874 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 115930
Query: 262 cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
|||| ||||||||||| || ||| | | | ||| | |||||||||| ||||||||
Sbjct: 115931 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 115990
Query: 322 ccttcgaaatcaatgtatccaacatttgatgttggtgaccg 362
|| || || || |||||||| ||||| ||||||||||||||
Sbjct: 115991 ccatccaagtctatgtatccgacattcgatgttggtgaccg 116031
Score = 71.9 bits (36), Expect = 2e-09
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 443 ttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaagggag 502
||||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| |
Sbjct: 116275 ttcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggtg 116334
Query: 503 gggacatcgttgaagt 518
|||| | |||||||||
Sbjct: 116335 gggataccgttgaagt 116350
Score = 67.9 bits (34), Expect = 4e-08
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 378 ggtttcatatattttccgggagcctcaagttttggacattgtgatcttccgtgc 431
||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 116130 ggtttcatacgttttccgggagcctaatattttggacattgtgatcttccgtgc 116183
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 83.8 bits (42), Expect = 6e-13
Identities = 72/82 (87%)
Strand = Plus / Minus
Query: 522 tgatggtcaattattagttaacggagtagtccaagatgaggactttgtgcttgagccacc 581
||||||| ||||||| ||||| ||||||||||| |||||||| |||||||| |||||||
Sbjct: 31469843 tgatggtaaattattggttaatggagtagtccaggatgaggaatttgtgctggagccact 31469784
Query: 582 cgattatgaaatggatccagtg 603
| | ||||||||||||| ||||
Sbjct: 31469783 caactatgaaatggatcaagtg 31469762
Score = 77.8 bits (39), Expect = 4e-11
Identities = 176/221 (79%), Gaps = 3/221 (1%)
Strand = Plus / Minus
Query: 142 ggtgctgctggggtggtgagacagagtagtgctgctcttggtgctggtttagggtcgagc 201
||||||||||| |||||||| |||| ||| |||| |||||||||| | || | ||||
Sbjct: 31470502 ggtgctgctggaatggtgagaaagagcagtcctgcacttggtgctgctgcagaggtgagc 31470443
Query: 202 aagaggactagctggctgtcgaggtgggtgaattcctgctcggatgatgcaaagaccgtc 261
| ||||| |||||| || |||||||||| ||||| ||||||||||| ||||| |||
Sbjct: 31470442 aggaggaa---ctggctatcaaggtgggtgagctcctgttcggatgatgccaagactgtc 31470386
Query: 262 cttgctgctgtgactgtacctctgctccacaaatcctatctagctgagccgcggtccatc 321
|||| ||||||||||| || ||| | | | ||| | |||||||||| ||||||||
Sbjct: 31470385 tttgccgctgtgactgtgccactgttatatagatcatccttagctgagccaaggtccatc 31470326
Query: 322 ccttcgaaatcaatgtatccaacatttgatgttggtgaccg 362
|| || || || |||||||| ||||| ||||||||||||||
Sbjct: 31470325 ccatccaagtctatgtatccgacattcgatgttggtgaccg 31470285
Score = 71.9 bits (36), Expect = 2e-09
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 443 ttcaggcattgggctacagctcaagtgatgtgttcatcaagagaattgtggccaagggag 502
||||||| ||||| | ||| ||| | ||||| |||||||||||||||||||||||||| |
Sbjct: 31470041 ttcaggccttggggtgcagttcaggagatgtattcatcaagagaattgtggccaagggtg 31469982
Query: 503 gggacatcgttgaagt 518
|||| | |||||||||
Sbjct: 31469981 gggataccgttgaagt 31469966
Score = 67.9 bits (34), Expect = 4e-08
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 378 ggtttcatatattttccgggagcctcaagttttggacattgtgatcttccgtgc 431
||||||||| |||||||||||||| | |||||||||||||||||||||||||
Sbjct: 31470186 ggtttcatacgttttccgggagcctaatattttggacattgtgatcttccgtgc 31470133
Score = 40.1 bits (20), Expect = 8.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 ggtgcggcggctgcccccgccaag 39
|||||||||||||||||| |||||
Sbjct: 24466112 ggtgcggcggctgccccctccaag 24466135
>dbj|AP008215.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 307 gagccgcggtccatcccttcgaaatcaatgtatccaacatttgatgttggtgaccggatt 366
|||||| |||||||||| || || || ||||| || || || ||||||||||||||||||
Sbjct: 16950015 gagccgaggtccatcccgtccaagtccatgtacccgaccttcgatgttggtgaccggatt 16949956
Query: 367 ctcgccgaga 376
||||||||||
Sbjct: 16949955 ctcgccgaga 16949946
Score = 61.9 bits (31), Expect = 2e-06
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 453 gggctacagctcaagtgatgtgttcatcaagagaattgtggccaagg 499
|||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 16949689 gggctacagctcgggtgatgttttcatcaagagagttgtggccaagg 16949643
Score = 56.0 bits (28), Expect = 1e-04
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 391 ttccgggagcctcaagttttggacattgtgatcttccgtgcacc 434
||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 16949842 ttccgggagccggaaatcttggacattgtgatcttccgtgcacc 16949799
Score = 44.1 bits (22), Expect = 0.56
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 541 aacggagtagtccaagatgaggactttgtg 570
|||||||||||||| |||||||| ||||||
Sbjct: 16949486 aacggagtagtccaggatgaggaatttgtg 16949457
>dbj|AP005393.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0488D02
Length = 154537
Score = 67.9 bits (34), Expect = 4e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 307 gagccgcggtccatcccttcgaaatcaatgtatccaacatttgatgttggtgaccggatt 366
|||||| |||||||||| || || || ||||| || || || ||||||||||||||||||
Sbjct: 79828 gagccgaggtccatcccgtccaagtccatgtacccgaccttcgatgttggtgaccggatt 79769
Query: 367 ctcgccgaga 376
||||||||||
Sbjct: 79768 ctcgccgaga 79759
Score = 61.9 bits (31), Expect = 2e-06
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 453 gggctacagctcaagtgatgtgttcatcaagagaattgtggccaagg 499
|||||||||||| ||||||| |||||||||||| ||||||||||||
Sbjct: 79502 gggctacagctcgggtgatgttttcatcaagagagttgtggccaagg 79456
Score = 56.0 bits (28), Expect = 1e-04
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 391 ttccgggagcctcaagttttggacattgtgatcttccgtgcacc 434
||||||||||| || | ||||||||||||||||||||||||||
Sbjct: 79655 ttccgggagccggaaatcttggacattgtgatcttccgtgcacc 79612
Score = 44.1 bits (22), Expect = 0.56
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 541 aacggagtagtccaagatgaggactttgtg 570
|||||||||||||| |||||||| ||||||
Sbjct: 79299 aacggagtagtccaggatgaggaatttgtg 79270
>gb|L03208.1 |TOBAIGA Nicotiana tabacum mRNA sequence
Length = 2188
Score = 40.1 bits (20), Expect = 8.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 511 gttgaagtgactgatggtca 530
||||||||||||||||||||
Sbjct: 1824 gttgaagtgactgatggtca 1843
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,471,631
Number of Sequences: 3902068
Number of extensions: 5471631
Number of successful extensions: 97232
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96918
Number of HSP's gapped (non-prelim): 313
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)