| Clone Name | baal39e18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_549856.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2381 Score = 484 bits (244), Expect = e-133 Identities = 549/653 (84%) Strand = Plus / Plus Query: 23 gttgaagggttgaaaagtgttctgaannnnnnnaagtcccggattcccgagttcaaagtt 82 ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 930 gttgaagggttgaaaagcgttctgaatttcttcaagtctcggattcctgaattcaaagtt 989 Query: 83 caagtcataaacgtggaggtgcccgaggaagctgagttagttgcggattcgtcagaagag 142 ||||| ||||| || || ||| | ||||||||||| |||| | | |||||||||||||| Sbjct: 990 caagtaataaatgtagatgtgtctgaggaagctgaattagcttcagattcgtcagaagaa 1049 Query: 143 ttagtgcaagatgatgtgaagagcacgtcagagagttcgttggaagagcctgtcgccgag 202 |||||||||||||||||||||||||||||||||| || |||||||| || | | ||| Sbjct: 1050 ttagtgcaagatgatgtgaagagcacgtcagagaactcattggaagattctaccactgag 1109 Query: 203 gaattccaggaggaagatgtttccgacggagattcagactcgaacgacgagagtaagggg 262 || | ||| |||| |||||| | || |||||||||||||| || || ||||| | Sbjct: 1110 gagcttcagcaggatgatgttccagatggagattcagactcagctgaagatagtaaaagt 1169 Query: 263 ccggaagtaaagcttttcatcagcggagtagttcataataaagaggaggctggagcaaaa 322 || ||| | ||||| ||||| || ||||| |||||||| || ||||| |||||||||||| Sbjct: 1170 ccagaaatgaagctcttcattagtggagtggttcataacaaggaggatgctggagcaaaa 1229 Query: 323 tcttatgttcgagttcctgctgaaataaataacctggaaagggactcctttgaactgtac 382 || |||||||||||||| |||||||| ||||| |||||| ||| ||||| ||||| ||| Sbjct: 1230 tcatatgttcgagttccagctgaaatcaataatttggaaaaggattccttcgaactttac 1289 Query: 383 attcctggaaaaggttctgatcgggatctgagtgaaacaaaggccgcgaaacagaaagtt 442 ||||||||||||||||||||||| |||||| ||| |||||||| || |||||||||||| Sbjct: 1290 attcctggaaaaggttctgatcgagatctggctgatacaaaggctgcaaaacagaaagtt 1349 Query: 443 gcggatatggccgctaaattggcgtcagagctcatgccctctgatgttgcaaaggcatta 502 || |||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct: 1350 gctgatatggctgccaaattggcatcagaacttatgccttctgatgttgcgaaggcatta 1409 Query: 503 tggggcaccaccaagagttcctccaagataaataaagaagtccaggagcttttgaagctt 562 ||||| || ||||||||||| || ||||||||||||||||| || ||||| || |||||| Sbjct: 1410 tggggaacgaccaagagttcttcgaagataaataaagaagtacaagagctcttaaagctt 1469 Query: 563 acactgagcaaggcccgagtcaagctgactgagaataccattttcaatcggattgttacg 622 || || |||||||| ||||||||||||||||||||||| ||||||||| |||| |||| Sbjct: 1470 accctcagcaaggctcgagtcaagctgactgagaatacaattttcaataggatcattact 1529 Query: 623 gactctaatggctcagatcctttcaatggtctctatgtaggagcatttagtcc 675 ||| ||| ||||||||||| || | |||||||||||| |||||||||||||| Sbjct: 1530 gacagtaacggctcagatccatttagtggtctctatgtgggagcatttagtcc 1582
>dbj|AK070363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047F20, full insert sequence Length = 2381 Score = 484 bits (244), Expect = e-133 Identities = 549/653 (84%) Strand = Plus / Plus Query: 23 gttgaagggttgaaaagtgttctgaannnnnnnaagtcccggattcccgagttcaaagtt 82 ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 930 gttgaagggttgaaaagcgttctgaatttcttcaagtctcggattcctgaattcaaagtt 989 Query: 83 caagtcataaacgtggaggtgcccgaggaagctgagttagttgcggattcgtcagaagag 142 ||||| ||||| || || ||| | ||||||||||| |||| | | |||||||||||||| Sbjct: 990 caagtaataaatgtagatgtgtctgaggaagctgaattagcttcagattcgtcagaagaa 1049 Query: 143 ttagtgcaagatgatgtgaagagcacgtcagagagttcgttggaagagcctgtcgccgag 202 |||||||||||||||||||||||||||||||||| || |||||||| || | | ||| Sbjct: 1050 ttagtgcaagatgatgtgaagagcacgtcagagaactcattggaagattctaccactgag 1109 Query: 203 gaattccaggaggaagatgtttccgacggagattcagactcgaacgacgagagtaagggg 262 || | ||| |||| |||||| | || |||||||||||||| || || ||||| | Sbjct: 1110 gagcttcagcaggatgatgttccagatggagattcagactcagctgaagatagtaaaagt 1169 Query: 263 ccggaagtaaagcttttcatcagcggagtagttcataataaagaggaggctggagcaaaa 322 || ||| | ||||| ||||| || ||||| |||||||| || ||||| |||||||||||| Sbjct: 1170 ccagaaatgaagctcttcattagtggagtggttcataacaaggaggatgctggagcaaaa 1229 Query: 323 tcttatgttcgagttcctgctgaaataaataacctggaaagggactcctttgaactgtac 382 || |||||||||||||| |||||||| ||||| |||||| ||| ||||| ||||| ||| Sbjct: 1230 tcatatgttcgagttccagctgaaatcaataatttggaaaaggattccttcgaactttac 1289 Query: 383 attcctggaaaaggttctgatcgggatctgagtgaaacaaaggccgcgaaacagaaagtt 442 ||||||||||||||||||||||| |||||| ||| |||||||| || |||||||||||| Sbjct: 1290 attcctggaaaaggttctgatcgagatctggctgatacaaaggctgcaaaacagaaagtt 1349 Query: 443 gcggatatggccgctaaattggcgtcagagctcatgccctctgatgttgcaaaggcatta 502 || |||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct: 1350 gctgatatggctgccaaattggcatcagaacttatgccttctgatgttgcgaaggcatta 1409 Query: 503 tggggcaccaccaagagttcctccaagataaataaagaagtccaggagcttttgaagctt 562 ||||| || ||||||||||| || ||||||||||||||||| || ||||| || |||||| Sbjct: 1410 tggggaacgaccaagagttcttcgaagataaataaagaagtacaagagctcttaaagctt 1469 Query: 563 acactgagcaaggcccgagtcaagctgactgagaataccattttcaatcggattgttacg 622 || || |||||||| ||||||||||||||||||||||| ||||||||| |||| |||| Sbjct: 1470 accctcagcaaggctcgagtcaagctgactgagaatacaattttcaataggatcattact 1529 Query: 623 gactctaatggctcagatcctttcaatggtctctatgtaggagcatttagtcc 675 ||| ||| ||||||||||| || | |||||||||||| |||||||||||||| Sbjct: 1530 gacagtaacggctcagatccatttagtggtctctatgtgggagcatttagtcc 1582
>gb|AY107854.1| Zea mays PCO142176 mRNA sequence Length = 1557 Score = 404 bits (204), Expect = e-109 Identities = 360/412 (87%) Strand = Plus / Plus Query: 264 cggaagtaaagcttttcatcagcggagtagttcataataaagaggaggctggagcaaaat 323 ||||||| |||||||| || || ||||| ||||| |||||||| || ||||||||||||| Sbjct: 285 cggaagtgaagctttttattagtggagtggttcacaataaagaagatgctggagcaaaat 344 Query: 324 cttatgttcgagttcctgctgaaataaataacctggaaagggactcctttgaactgtaca 383 | |||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| Sbjct: 345 catatgttcgagttccagctgaaataaataacatggaaaaggactcctttgaactgtaca 404 Query: 384 ttcctggaaaaggttctgatcgggatctgagtgaaacaaaggccgcgaaacagaaagttg 443 |||||||| ||||||||||||| ||| || |||||||||||| || ||||||||||||| Sbjct: 405 ttcctggagaaggttctgatcgtgatttggctgaaacaaaggctgcaaaacagaaagttg 464 Query: 444 cggatatggccgctaaattggcgtcagagctcatgccctctgatgttgcaaaggcattat 503 | |||||||| |||||||| || |||||||| ||||| ||||||||||| |||||||||| Sbjct: 465 cagatatggctgctaaattagcctcagagcttatgccgtctgatgttgccaaggcattat 524 Query: 504 ggggcaccaccaagagttcctccaagataaataaagaagtccaggagcttttgaagctta 563 |||| || |||||||||| || ||||||||||||||||| ||||||||||| | ||||| Sbjct: 525 ggggtacagccaagagttcttcaaagataaataaagaagttcaggagcttttaaggctta 584 Query: 564 cactgagcaaggcccgagtcaagctgactgagaataccattttcaatcggattgttacgg 623 | | ||||||||||||||||||||||| || ||||||||||| || || || ||| || Sbjct: 585 cgttaagcaaggcccgagtcaagctgaccgaaaataccatttttaaacgaatcattatgg 644 Query: 624 actctaatggctcagatcctttcaatggtctctatgtaggagcatttagtcc 675 || |||| || ||||||| || |||||||||||||| |||||||||||||| Sbjct: 645 acactaacagcacagatccatttaatggtctctatgtgggagcatttagtcc 696 Score = 81.8 bits (41), Expect = 3e-12 Identities = 139/171 (81%), Gaps = 3/171 (1%) Strand = Plus / Plus Query: 56 aagtcccggattcccgagttcaaagttcaagtcataaacgtggaggtgcccgaggaagct 115 ||||| |||||||| || ||||||||||| || ||||| || || ||| | |||||| || Sbjct: 80 aagtctcggattcctgaattcaaagttcaggtgataaatgttgatgtggctgaggaaact 139 Query: 116 gagttagttgcggattcgtcagaagagttagtgcaagatgatgtgaagagcacgtcagag 175 || |||| ||| ||||||| ||||| |||||||||||||||||||| || || |||| Sbjct: 140 gaattagctgcaaattcgtctgaagaattagtgcaagatgatgtgaaaagtactccagaa 199 Query: 176 agttcgttggaagagcctgtcgccgaggaattc---caggaggaagatgtt 223 || || ||||||||||| | | | |||||| || ||||||||||||||| Sbjct: 200 agctcattggaagagccagccactgaggaactcgagcaggaggaagatgtt 250
>dbj|AK058708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D03, full insert sequence Length = 1178 Score = 363 bits (183), Expect = 5e-97 Identities = 324/371 (87%) Strand = Plus / Plus Query: 305 gaggaggctggagcaaaatcttatgttcgagttcctgctgaaataaataacctggaaagg 364 ||||| |||||||||||||| |||||||||||||| |||||||| ||||| |||||| | Sbjct: 12 gaggatgctggagcaaaatcatatgttcgagttccagctgaaatcaataatttggaaaag 71 Query: 365 gactcctttgaactgtacattcctggaaaaggttctgatcgggatctgagtgaaacaaag 424 || ||||| ||||| |||||||||||||||||||||||||| |||||| ||| |||||| Sbjct: 72 gattccttcgaactttacattcctggaaaaggttctgatcgagatctggctgatacaaag 131 Query: 425 gccgcgaaacagaaagttgcggatatggccgctaaattggcgtcagagctcatgccctct 484 || || |||||||||||||| |||||||| || |||||||| ||||| || ||||| ||| Sbjct: 132 gctgcaaaacagaaagttgctgatatggctgccaaattggcatcagaacttatgccttct 191 Query: 485 gatgttgcaaaggcattatggggcaccaccaagagttcctccaagataaataaagaagtc 544 |||||||| |||||||||||||| || ||||||||||| || ||||||||||||||||| Sbjct: 192 gatgttgcgaaggcattatggggaacgaccaagagttcttcgaagataaataaagaagta 251 Query: 545 caggagcttttgaagcttacactgagcaaggcccgagtcaagctgactgagaataccatt 604 || ||||| || |||||||| || |||||||| ||||||||||||||||||||||| ||| Sbjct: 252 caagagctcttaaagcttaccctcagcaaggctcgagtcaagctgactgagaatacaatt 311 Query: 605 ttcaatcggattgttacggactctaatggctcagatcctttcaatggtctctatgtagga 664 |||||| |||| |||| ||| ||| ||||||||||| || | |||||||||||| ||| Sbjct: 312 ttcaataggatcattactgacagtaacggctcagatccatttagtggtctctatgtggga 371 Query: 665 gcatttagtcc 675 ||||||||||| Sbjct: 372 gcatttagtcc 382
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 347 bits (175), Expect = 3e-92 Identities = 417/500 (83%) Strand = Plus / Minus Query: 23 gttgaagggttgaaaagtgttctgaannnnnnnaagtcccggattcccgagttcaaagtt 82 ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 418073 gttgaagggttgaaaagcgttctgaatttcttcaagtctcggattcctgaattcaaagtt 418014 Query: 83 caagtcataaacgtggaggtgcccgaggaagctgagttagttgcggattcgtcagaagag 142 ||||| ||||| || || ||| | ||||||||||| |||| | | |||||||||||||| Sbjct: 418013 caagtaataaatgtagatgtgtctgaggaagctgaattagcttcagattcgtcagaagaa 417954 Query: 143 ttagtgcaagatgatgtgaagagcacgtcagagagttcgttggaagagcctgtcgccgag 202 |||||||||||||||||||||||||||||||||| || |||||||| || | | ||| Sbjct: 417953 ttagtgcaagatgatgtgaagagcacgtcagagaactcattggaagattctaccactgag 417894 Query: 203 gaattccaggaggaagatgtttccgacggagattcagactcgaacgacgagagtaagggg 262 || | ||| |||| |||||| | || |||||||||||||| || || ||||| | Sbjct: 417893 gagcttcagcaggatgatgttccagatggagattcagactcagctgaagatagtaaaagt 417834 Query: 263 ccggaagtaaagcttttcatcagcggagtagttcataataaagaggaggctggagcaaaa 322 || ||| | ||||| ||||| || ||||| |||||||| || ||||| |||||||||||| Sbjct: 417833 ccagaaatgaagctcttcattagtggagtggttcataacaaggaggatgctggagcaaaa 417774 Query: 323 tcttatgttcgagttcctgctgaaataaataacctggaaagggactcctttgaactgtac 382 || |||||||||||||| |||||||| ||||| |||||| ||| ||||| ||||| ||| Sbjct: 417773 tcatatgttcgagttccagctgaaatcaataatttggaaaaggattccttcgaactttac 417714 Query: 383 attcctggaaaaggttctgatcgggatctgagtgaaacaaaggccgcgaaacagaaagtt 442 ||||||||||||||||||||||| |||||| ||| |||||||| || |||||||||||| Sbjct: 417713 attcctggaaaaggttctgatcgagatctggctgatacaaaggctgcaaaacagaaagtt 417654 Query: 443 gcggatatggccgctaaattggcgtcagagctcatgccctctgatgttgcaaaggcatta 502 || |||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct: 417653 gctgatatggctgccaaattggcatcagaacttatgccttctgatgttgcgaaggcatta 417594 Query: 503 tggggcaccaccaagagttc 522 ||||| || ||||||||||| Sbjct: 417593 tggggaacgaccaagagttc 417574 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 528 agataaataaagaagtccaggagcttttgaagcttacactgagcaaggcccgagtcaagc 587 |||||||||||||||| || ||||| || |||||||| || |||||||| |||||||||| Sbjct: 417269 agataaataaagaagtacaagagctcttaaagcttaccctcagcaaggctcgagtcaagc 417210 Query: 588 tgactgagaataccattttcaatcggattgttacggactctaatggctcagatcc 642 ||||||||||||| ||||||||| |||| |||| ||| ||| ||||||||||| Sbjct: 417209 tgactgagaatacaattttcaataggatcattactgacagtaacggctcagatcc 417155 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 650 ggtctctatgtaggagcatttagtcc 675 ||||||||||| |||||||||||||| Sbjct: 417072 ggtctctatgtgggagcatttagtcc 417047
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 347 bits (175), Expect = 3e-92 Identities = 417/500 (83%) Strand = Plus / Minus Query: 23 gttgaagggttgaaaagtgttctgaannnnnnnaagtcccggattcccgagttcaaagtt 82 ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 169911 gttgaagggttgaaaagcgttctgaatttcttcaagtctcggattcctgaattcaaagtt 169852 Query: 83 caagtcataaacgtggaggtgcccgaggaagctgagttagttgcggattcgtcagaagag 142 ||||| ||||| || || ||| | ||||||||||| |||| | | |||||||||||||| Sbjct: 169851 caagtaataaatgtagatgtgtctgaggaagctgaattagcttcagattcgtcagaagaa 169792 Query: 143 ttagtgcaagatgatgtgaagagcacgtcagagagttcgttggaagagcctgtcgccgag 202 |||||||||||||||||||||||||||||||||| || |||||||| || | | ||| Sbjct: 169791 ttagtgcaagatgatgtgaagagcacgtcagagaactcattggaagattctaccactgag 169732 Query: 203 gaattccaggaggaagatgtttccgacggagattcagactcgaacgacgagagtaagggg 262 || | ||| |||| |||||| | || |||||||||||||| || || ||||| | Sbjct: 169731 gagcttcagcaggatgatgttccagatggagattcagactcagctgaagatagtaaaagt 169672 Query: 263 ccggaagtaaagcttttcatcagcggagtagttcataataaagaggaggctggagcaaaa 322 || ||| | ||||| ||||| || ||||| |||||||| || ||||| |||||||||||| Sbjct: 169671 ccagaaatgaagctcttcattagtggagtggttcataacaaggaggatgctggagcaaaa 169612 Query: 323 tcttatgttcgagttcctgctgaaataaataacctggaaagggactcctttgaactgtac 382 || |||||||||||||| |||||||| ||||| |||||| ||| ||||| ||||| ||| Sbjct: 169611 tcatatgttcgagttccagctgaaatcaataatttggaaaaggattccttcgaactttac 169552 Query: 383 attcctggaaaaggttctgatcgggatctgagtgaaacaaaggccgcgaaacagaaagtt 442 ||||||||||||||||||||||| |||||| ||| |||||||| || |||||||||||| Sbjct: 169551 attcctggaaaaggttctgatcgagatctggctgatacaaaggctgcaaaacagaaagtt 169492 Query: 443 gcggatatggccgctaaattggcgtcagagctcatgccctctgatgttgcaaaggcatta 502 || |||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct: 169491 gctgatatggctgccaaattggcatcagaacttatgccttctgatgttgcgaaggcatta 169432 Query: 503 tggggcaccaccaagagttc 522 ||||| || ||||||||||| Sbjct: 169431 tggggaacgaccaagagttc 169412 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 528 agataaataaagaagtccaggagcttttgaagcttacactgagcaaggcccgagtcaagc 587 |||||||||||||||| || ||||| || |||||||| || |||||||| |||||||||| Sbjct: 169107 agataaataaagaagtacaagagctcttaaagcttaccctcagcaaggctcgagtcaagc 169048 Query: 588 tgactgagaataccattttcaatcggattgttacggactctaatggctcagatcc 642 ||||||||||||| ||||||||| |||| |||| ||| ||| ||||||||||| Sbjct: 169047 tgactgagaatacaattttcaataggatcattactgacagtaacggctcagatcc 168993 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 650 ggtctctatgtaggagcatttagtcc 675 ||||||||||| |||||||||||||| Sbjct: 168910 ggtctctatgtgggagcatttagtcc 168885
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 347 bits (175), Expect = 3e-92 Identities = 417/500 (83%) Strand = Plus / Minus Query: 23 gttgaagggttgaaaagtgttctgaannnnnnnaagtcccggattcccgagttcaaagtt 82 ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 58274 gttgaagggttgaaaagcgttctgaatttcttcaagtctcggattcctgaattcaaagtt 58215 Query: 83 caagtcataaacgtggaggtgcccgaggaagctgagttagttgcggattcgtcagaagag 142 ||||| ||||| || || ||| | ||||||||||| |||| | | |||||||||||||| Sbjct: 58214 caagtaataaatgtagatgtgtctgaggaagctgaattagcttcagattcgtcagaagaa 58155 Query: 143 ttagtgcaagatgatgtgaagagcacgtcagagagttcgttggaagagcctgtcgccgag 202 |||||||||||||||||||||||||||||||||| || |||||||| || | | ||| Sbjct: 58154 ttagtgcaagatgatgtgaagagcacgtcagagaactcattggaagattctaccactgag 58095 Query: 203 gaattccaggaggaagatgtttccgacggagattcagactcgaacgacgagagtaagggg 262 || | ||| |||| |||||| | || |||||||||||||| || || ||||| | Sbjct: 58094 gagcttcagcaggatgatgttccagatggagattcagactcagctgaagatagtaaaagt 58035 Query: 263 ccggaagtaaagcttttcatcagcggagtagttcataataaagaggaggctggagcaaaa 322 || ||| | ||||| ||||| || ||||| |||||||| || ||||| |||||||||||| Sbjct: 58034 ccagaaatgaagctcttcattagtggagtggttcataacaaggaggatgctggagcaaaa 57975 Query: 323 tcttatgttcgagttcctgctgaaataaataacctggaaagggactcctttgaactgtac 382 || |||||||||||||| |||||||| ||||| |||||| ||| ||||| ||||| ||| Sbjct: 57974 tcatatgttcgagttccagctgaaatcaataatttggaaaaggattccttcgaactttac 57915 Query: 383 attcctggaaaaggttctgatcgggatctgagtgaaacaaaggccgcgaaacagaaagtt 442 ||||||||||||||||||||||| |||||| ||| |||||||| || |||||||||||| Sbjct: 57914 attcctggaaaaggttctgatcgagatctggctgatacaaaggctgcaaaacagaaagtt 57855 Query: 443 gcggatatggccgctaaattggcgtcagagctcatgccctctgatgttgcaaaggcatta 502 || |||||||| || |||||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct: 57854 gctgatatggctgccaaattggcatcagaacttatgccttctgatgttgcgaaggcatta 57795 Query: 503 tggggcaccaccaagagttc 522 ||||| || ||||||||||| Sbjct: 57794 tggggaacgaccaagagttc 57775 Score = 109 bits (55), Expect = 1e-20 Identities = 100/115 (86%) Strand = Plus / Minus Query: 528 agataaataaagaagtccaggagcttttgaagcttacactgagcaaggcccgagtcaagc 587 |||||||||||||||| || ||||| || |||||||| || |||||||| |||||||||| Sbjct: 57470 agataaataaagaagtacaagagctcttaaagcttaccctcagcaaggctcgagtcaagc 57411 Query: 588 tgactgagaataccattttcaatcggattgttacggactctaatggctcagatcc 642 ||||||||||||| ||||||||| |||| |||| ||| ||| ||||||||||| Sbjct: 57410 tgactgagaatacaattttcaataggatcattactgacagtaacggctcagatcc 57356 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 650 ggtctctatgtaggagcatttagtcc 675 ||||||||||| |||||||||||||| Sbjct: 57273 ggtctctatgtgggagcatttagtcc 57248
>gb|AC134409.12| Mus musculus chromosome 5, clone RP24-355F10, complete sequence Length = 141528 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 gaggaattccaggaggaagatg 221 |||||||||||||||||||||| Sbjct: 93720 gaggaattccaggaggaagatg 93741
>gb|AC113099.12| Mus musculus chromosome 8, clone RP23-314N20, complete sequence Length = 199694 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 524 tccaagataaataaagaagtc 544 ||||||||||||||||||||| Sbjct: 155462 tccaagataaataaagaagtc 155482 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 tccaagataaataaagaagtc 544 ||||||||||||||||||||| Sbjct: 23779 tccaagataaataaagaagtc 23759
>gb|AC140205.2| Mus musculus BAC clone RP24-344F2 from chromosome 8, complete sequence Length = 140215 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 524 tccaagataaataaagaagtc 544 ||||||||||||||||||||| Sbjct: 101829 tccaagataaataaagaagtc 101849
>gb|AC121131.14| Mus musculus chromosome 8, clone RP23-187D7, complete sequence Length = 188634 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 tccaagataaataaagaagtc 544 ||||||||||||||||||||| Sbjct: 35989 tccaagataaataaagaagtc 35969 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 524 tccaagataaataaagaagtc 544 ||||||||||||||||||||| Sbjct: 214 tccaagataaataaagaagtc 234
>gb|AC154279.2| Mus musculus BAC clone RP24-271E12 from chromosome 17, complete sequence Length = 173729 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 628 taatggctcagatcctttca 647 |||||||||||||||||||| Sbjct: 138518 taatggctcagatcctttca 138537
>gb|AC140843.2| Mus musculus BAC clone RP24-443L17 from chromosome 14, complete sequence Length = 124918 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tggagcaaaatcttatgttc 332 |||||||||||||||||||| Sbjct: 95612 tggagcaaaatcttatgttc 95593
>gb|AC102145.3| Mus musculus chromosome 6, clone RP23-302K3, complete sequence Length = 199882 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 atgccctctgatgttgcaaaggca 499 ||||||||||||||| |||||||| Sbjct: 36109 atgccctctgatgtttcaaaggca 36086
>emb|AL138795.21| Human DNA sequence from clone RP4-790G17 on chromosome 1q21.1-21.3 Contains the ANP32E gene for acidic (leucine-rich) nuclear phosphoprotein 32 family, member E, the CA14 gene for carbonic anhydrase XIV, the gene for a likely ortholog of C. elegans anterior pharynx defective 1A (APH-1A), the gene for a novel protein (FLJ23221), a novel gene and the MRPS21 gene for mitochondrial ribosomal protein S21, complete sequence Length = 132823 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 taaataaagaagtccaggag 550 |||||||||||||||||||| Sbjct: 72710 taaataaagaagtccaggag 72691
>gb|AC158922.8| Mus musculus chromosome 15, clone RP23-182C12, complete sequence Length = 201723 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 taaataaagaagtccaggag 550 |||||||||||||||||||| Sbjct: 64855 taaataaagaagtccaggag 64874
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 tgatgttgcaaaggcattat 503 |||||||||||||||||||| Sbjct: 1211504 tgatgttgcaaaggcattat 1211523
>gb|AC022878.8| Homo sapiens chromosome 11, clone RP11-413N13, complete sequence Length = 179652 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 tcagagctcatgccctctga 486 |||||||||||||||||||| Sbjct: 99266 tcagagctcatgccctctga 99285
>gb|AC007145.10| Drosophila melanogaster, chromosome 2L, region 37D, BAC clone BACR10I09, complete sequence Length = 169289 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 ttgaagcttacactgagcaa 573 |||||||||||||||||||| Sbjct: 155060 ttgaagcttacactgagcaa 155079
>gb|AC156021.2| Mus musculus BAC clone RP23-256A5 from chromosome 5, complete sequence Length = 217987 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tggagcaaaatcttatgttc 332 |||||||||||||||||||| Sbjct: 56287 tggagcaaaatcttatgttc 56268
>ref|NM_062162.3| Caenorhabditis elegans Y49F6B.2 (Y49F6B.2) mRNA, complete cds Length = 816 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agcctgtcgccgaggaattc 208 |||||||||||||||||||| Sbjct: 119 agcctgtcgccgaggaattc 138
>gb|AC007082.5|AC007082 Drosophila melanogaster, chromosome 2L, region 37D, BAC clone BACR28G24, complete sequence Length = 171375 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 ttgaagcttacactgagcaa 573 |||||||||||||||||||| Sbjct: 18669 ttgaagcttacactgagcaa 18688
>gb|AC006790.2| Caenorhabditis elegans cosmid Y49F6B, complete sequence Length = 52139 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 agcctgtcgccgaggaattc 208 |||||||||||||||||||| Sbjct: 37375 agcctgtcgccgaggaattc 37394
>gb|AC154849.2| Mus musculus BAC clone RP23-35P8 from chromosome 13, complete sequence Length = 200650 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 tggagcaaaatcttatgttc 332 |||||||||||||||||||| Sbjct: 118386 tggagcaaaatcttatgttc 118367
>gb|AC007878.2| Homo sapiens BAC clone RP11-236P2 from 2, complete sequence Length = 185134 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 tgaaataaataacctggaaa 362 |||||||||||||||||||| Sbjct: 137173 tgaaataaataacctggaaa 137154
>gb|AC098485.6| Homo sapiens BAC clone CTD-2053I13 from 2, complete sequence Length = 88404 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 agcaaaatcttatgttcgag 335 |||||||||||||||||||| Sbjct: 31267 agcaaaatcttatgttcgag 31248
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ggaagagcctgtcgccgagg 203 |||||||||||||||||||| Sbjct: 6931044 ggaagagcctgtcgccgagg 6931063
>gb|AC153884.1| Mus musculus 6 BAC RP23-476E22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 195597 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 atgccctctgatgttgcaaaggca 499 ||||||||||||||| |||||||| Sbjct: 184792 atgccctctgatgtttcaaaggca 184769
>gb|AC007461.8|AC007461 Homo sapiens chromosome 17, clone 84_E_24, complete sequence Length = 180385 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tgctgaaataaataacctgg 359 |||||||||||||||||||| Sbjct: 134183 tgctgaaataaataacctgg 134202
>gb|AE003662.3| Drosophila melanogaster chromosome 2L, section 71 of 83 of the complete sequence Length = 266205 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 ttgaagcttacactgagcaa 573 |||||||||||||||||||| Sbjct: 150241 ttgaagcttacactgagcaa 150260
>gb|AC004704.2|AC004704 Homo sapiens chromosome 4 clone B341C20 map 4q25, complete sequence Length = 134187 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 gagtagttcataataaagag 307 |||||||||||||||||||| Sbjct: 112371 gagtagttcataataaagag 112390
>emb|CT030659.8| Mouse DNA sequence from clone RP23-125F8 on chromosome 9, complete sequence Length = 199662 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tggagcaaaatcttatgttc 332 |||||||||||||||||||| Sbjct: 70374 tggagcaaaatcttatgttc 70393
>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete sequence Length = 227692 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 542 gtccaggagcttttgaagct 561 |||||||||||||||||||| Sbjct: 206825 gtccaggagcttttgaagct 206806
>gb|U00090.1| Rhizobium sp. NGR234 plasmid pNGR234a, complete sequence Length = 536165 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 ctggaaaaggttctgatcgg 406 |||||||||||||||||||| Sbjct: 353030 ctggaaaaggttctgatcgg 353011
>emb|AL626808.28| Mouse DNA sequence from clone RP23-383I7 on chromosome 4, complete sequence Length = 203992 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 tggagcaaaatcttatgttc 332 |||||||||||||||||||| Sbjct: 55915 tggagcaaaatcttatgttc 55934 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,549,040 Number of Sequences: 3902068 Number of extensions: 5549040 Number of successful extensions: 99606 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99478 Number of HSP's gapped (non-prelim): 123 length of query: 675 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 652 effective length of database: 17,143,297,704 effective search space: 11177430103008 effective search space used: 11177430103008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)