ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal38o17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK058719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E07, full insert sequence Length = 2082 Score = 335 bits (169), Expect = 6e-89 Identities = 295/337 (87%) Strand = Plus / Plus Query: 1 tagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagattggactta 60 |||||||||| || |||||| | ||||| |||||||||| |||||||| |||||||||| Sbjct: 434 tagacaaggaaggagctaatgctgaacgggtcatgcaagggctttcccaaattggactta 493 Query: 61 tgccagagatgtggggtggtgacaccccgatggttcagataagtgctcttaagggagaga 120 |||||||| |||||||||||| | ||| ||| ||||||||||||||||||| |||||| Sbjct: 494 tgccagaggcgtggggtggtgatatcccaatgattcagataagtgctcttaatggagagg 553 Query: 121 atgttgatgagctattagagaccgtcatgcttgttgctgagttgctagaattaaaagcga 180 ||| ||||| ||||| ||||| |||| |||||||||||| ||| ||||||||| || | Sbjct: 554 gtgtagatgaactattggagactatcattcttgttgctgagctgcaagaattaaaggcca 613 Query: 181 accctcatagaaatgcaaagggtacggttattgaagcatgtcttgacaaggccagaggac 240 | ||||||||||||||||||||||| |||||||||||||| |||||||| || | |||| Sbjct: 614 atcctcatagaaatgcaaagggtacagttattgaagcatgccttgacaaagctaaaggat 673 Query: 241 ctcttgccaccctagttgtacagaatggaaccttgaataagggcgatattcttgtttgcg 300 |||||||||||||||||||||||||||||||| | || ||||| |||||| |||| || | Sbjct: 674 ctcttgccaccctagttgtacagaatggaaccctaaacaagggtgatattgttgtgtgtg 733 Query: 301 gtgaagcttttggaaagatccgtgcaatgtatgatga 337 |||| |||||||||||||||||||||||||||||||| Sbjct: 734 gtgaggcttttggaaagatccgtgcaatgtatgatga 770
>gb|AY103661.1| Zea mays PCO126844 mRNA sequence Length = 1594 Score = 220 bits (111), Expect = 2e-54 Identities = 237/279 (84%) Strand = Plus / Plus Query: 60 atgccagagatgtggggtggtgacaccccgatggttcagataagtgctcttaagggagag 119 |||||||| |||||||||||||| ||||| ||||| ||||||||||||||| || || Sbjct: 10 atgccagaaatgtggggtggtgataccccaatggtcgagataagtgctcttactggggat 69 Query: 120 aatgttgatgagctattagagaccgtcatgcttgttgctgagttgctagaattaaaagcg 179 ||||||||||| || | || || |||||||||||||| ||||||| ||||||||| || Sbjct: 70 aatgttgatgaacttctggaaactgtcatgcttgttgcagagttgcaagaattaaaggca 129 Query: 180 aaccctcatagaaatgcaaagggtacggttattgaagcatgtcttgacaaggccagagga 239 || || ||||| ||||| ||||| || |||||||||||||| ||||||||||||| ||| Sbjct: 130 aatccacataggaatgcgaagggcactgttattgaagcatgccttgacaaggccaaaggg 189 Query: 240 cctcttgccaccctagttgtacagaatggaaccttgaataagggcgatattcttgtttgc 299 |||||||| ||| ||||||| |||||||||||| | || || | |||||| |||| || Sbjct: 190 cctcttgctaccttagttgttcagaatggaaccctaaacaaagctgatattattgtgtgt 249 Query: 300 ggtgaagcttttggaaagatccgtgcaatgtatgatgac 338 |||||||||| |||||||||||||||| ||||||||||| Sbjct: 250 ggtgaagcttatggaaagatccgtgcattgtatgatgac 288
>gb|AC098832.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1268_B08, complete sequence Length = 119500 Score = 165 bits (83), Expect = 1e-37 Identities = 134/151 (88%) Strand = Plus / Plus Query: 167 agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 226 ||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 72293 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 72352 Query: 227 caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 286 ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 72353 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 72412 Query: 287 tattcttgtttgcggtgaagcttttggaaag 317 |||| |||| || ||||| |||||||||||| Sbjct: 72413 tattgttgtgtgtggtgaggcttttggaaag 72443 Score = 91.7 bits (46), Expect = 1e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 1 tagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagattggactta 60 |||||||||| || |||||| | ||||| ||||||||||| |||||||| |||||||||| Sbjct: 71929 tagacaaggaaggagctaatgctgaacgggtcatgcaagagctttcccaaattggactta 71988 Query: 61 tgccagagatgtggggtggtga 82 |||||||| |||||||||||| Sbjct: 71989 tgccagaggcgtggggtggtga 72010 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 95 tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 154 |||||||||||||||||| |||||| ||| ||||| ||||| ||||| |||| ||||| Sbjct: 72141 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 72200 Query: 155 tgctgag 161 ||||||| Sbjct: 72201 tgctgag 72207 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 agatccgtgcaatgtatgatga 337 |||||||||||||||||||||| Sbjct: 72572 agatccgtgcaatgtatgatga 72593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 165 bits (83), Expect = 1e-37 Identities = 134/151 (88%) Strand = Plus / Plus Query: 167 agaattaaaagcgaaccctcatagaaatgcaaagggtacggttattgaagcatgtcttga 226 ||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 28437369 agaattaaaggccaatcctcatagaaatgcaaagggtacagttattgaagcatgccttga 28437428 Query: 227 caaggccagaggacctcttgccaccctagttgtacagaatggaaccttgaataagggcga 286 ||| || | |||| |||||||||||||||||||||||||||||||| | || ||||| || Sbjct: 28437429 caaagctaaaggatctcttgccaccctagttgtacagaatggaaccctaaacaagggtga 28437488 Query: 287 tattcttgtttgcggtgaagcttttggaaag 317 |||| |||| || ||||| |||||||||||| Sbjct: 28437489 tattgttgtgtgtggtgaggcttttggaaag 28437519 Score = 91.7 bits (46), Expect = 1e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 1 tagacaaggagggtgctaatccagaacgagtcatgcaagaactttcccagattggactta 60 |||||||||| || |||||| | ||||| ||||||||||| |||||||| |||||||||| Sbjct: 28437005 tagacaaggaaggagctaatgctgaacgggtcatgcaagagctttcccaaattggactta 28437064 Query: 61 tgccagagatgtggggtggtga 82 |||||||| |||||||||||| Sbjct: 28437065 tgccagaggcgtggggtggtga 28437086 Score = 61.9 bits (31), Expect = 1e-06 Identities = 58/67 (86%) Strand = Plus / Plus Query: 95 tcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatgcttgt 154 |||||||||||||||||| |||||| ||| ||||| ||||| ||||| |||| ||||| Sbjct: 28437217 tcagataagtgctcttaatggagagggtgtagatgaactattggagactatcattcttgt 28437276 Query: 155 tgctgag 161 ||||||| Sbjct: 28437277 tgctgag 28437283 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 316 agatccgtgcaatgtatgatga 337 |||||||||||||||||||||| Sbjct: 28437648 agatccgtgcaatgtatgatga 28437669
>gb|AF324244.1|AF324244 Phaseolus vulgaris translation initiation factor 2 (IF2) gene, complete cds; nuclear gene for chloroplast product Length = 4499 Score = 99.6 bits (50), Expect = 6e-18 Identities = 154/186 (82%), Gaps = 2/186 (1%) Strand = Plus / Plus Query: 18 aatccagaacgagtcatgcaagaactttcccagattggacttatgccaga-gatgtgggg 76 |||||||||||||||||||| || ||||| ||||| | |||||||| ||| ||||| Sbjct: 2013 aatccagaacgagtcatgcaggagctttcttcaattggtttaatgccagaagat-tgggg 2071 Query: 77 tggtgacaccccgatggttcagataagtgctcttaagggagagaatgttgatgagctatt 136 ||| ||||||| ||||||| ||||||||||||||| || ||||||| ||||| || || Sbjct: 2072 tggcaacaccccaatggttccgataagtgctcttaaagggaagaatgtggatgatctctt 2131 Query: 137 agagaccgtcatgcttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgc 196 ||| || || ||||||||||||||||||| ||| | ||||| || ||| |||||| ||| Sbjct: 2132 agaaactgttatgcttgttgctgagttgcaagagctgaaagctaatcctgatagaagtgc 2191 Query: 197 aaaggg 202 |||||| Sbjct: 2192 aaaggg 2197
>ref|NM_101583.2| Arabidopsis thaliana GTP binding / translation initiation factor AT1G17220 mRNA, complete cds Length = 3633 Score = 42.1 bits (21), Expect = 1.2 Identities = 90/113 (79%) Strand = Plus / Plus Query: 90 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 149 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 2230 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2289 Query: 150 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 202 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 2290 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2342
>gb|BT001007.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds Length = 3081 Score = 42.1 bits (21), Expect = 1.2 Identities = 90/113 (79%) Strand = Plus / Plus Query: 90 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 149 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 1930 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 1989 Query: 150 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 202 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 1990 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2042
>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete sequence Length = 176947 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 tagaaatgcaaagggtacggttatt 212 |||||||||||||| |||||||||| Sbjct: 102571 tagaaatgcaaaggatacggttatt 102595
>gb|AF367343.1| Arabidopsis thaliana At1g17220/F20D23_8 mRNA, complete cds Length = 3631 Score = 42.1 bits (21), Expect = 1.2 Identities = 90/113 (79%) Strand = Plus / Plus Query: 90 atggttcagataagtgctcttaagggagagaatgttgatgagctattagagaccgtcatg 149 ||||||||||| |||||| | || || || ||||| ||||| || || || || |||||| Sbjct: 2229 atggttcagatcagtgctttgaaaggggaaaatgtcgatgatctgttggaaactgtcatg 2288 Query: 150 cttgttgctgagttgctagaattaaaagcgaaccctcatagaaatgcaaaggg 202 |||||||| ||| | | ||| || ||||| || || || |||||||| ||||| Sbjct: 2289 cttgttgcagagcttcaagagttgaaagcaaatccacacagaaatgccaaggg 2341
>gb|AC124751.4| Mus musculus BAC clone RP23-274P18 from chromosome 13, complete sequence Length = 160979 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 206 ggttattgaagcatgtcttgacaa 229 ||||||| |||||||||||||||| Sbjct: 63376 ggttatttaagcatgtcttgacaa 63399
>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175262 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cagaatggaaccttgaataa 280 |||||||||||||||||||| Sbjct: 55109 cagaatggaaccttgaataa 55128
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cagaatggaaccttgaataa 280 |||||||||||||||||||| Sbjct: 262912 cagaatggaaccttgaataa 262931
>emb|AL030994.1|DMC4F1 Drosophila melanogaster cosmid clone 4F1 Length = 44352 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cagaatggaaccttgaataa 280 |||||||||||||||||||| Sbjct: 4566 cagaatggaaccttgaataa 4585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,659,629 Number of Sequences: 3902068 Number of extensions: 2659629 Number of successful extensions: 44044 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44006 Number of HSP's gapped (non-prelim): 37 length of query: 355 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 333 effective length of database: 17,147,199,772 effective search space: 5710017524076 effective search space used: 5710017524076 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
