ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal38o15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY571339.1| Psephurus gladius mitochondrion, complete genome 42 1.8
2gb|AY510085.1| Acipenser dabryanus mitochondrion, complete genome 42 1.8
3gb|AY442351.1| Huso huso mitochondrion, complete genome 42 1.8
4dbj|AP006356.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.8
5ref|NM_115647.1| Arabidopsis thaliana unknown protein AT3G57850 ... 40 7.3
6gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 7.3
7gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence 40 7.3
8ref|XM_808059.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 7.3
9gb|AC003085.2| Homo sapiens BAC clone CTB-94H21 from 7, complete... 40 7.3
10gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, com... 40 7.3
11gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, c... 40 7.3
12gb|AC123789.6| Homo sapiens chromosome 11, clone RP5-998N23, com... 40 7.3
13emb|BX294155.1| Pirellula sp. strain 1 complete genome; segment ... 40 7.3
14emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, B... 40 7.3
15emb|AJ585409.1| Brachypelma angustum mitochondrial nd1 gene (par... 40 7.3
16gb|AF087017.1| Homo sapiens H19 gene, complete sequence 40 7.3
17dbj|AK128774.1| Homo sapiens cDNA FLJ45387 fis, clone BRHIP3024703 40 7.3
18gb|AC004556.1|AC004556 Homo sapiens Chromosome 11p15.5 PAC pDJ99... 40 7.3
19gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, comple... 40 7.3

>gb|AY571339.1| Psephurus gladius mitochondrion, complete genome
          Length = 16483

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 166  tactacaaggcctcgacctca 186
            |||||||||||||||||||||
Sbjct: 4422 tactacaaggcctcgacctca 4442



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>gb|AY510085.1| Acipenser dabryanus mitochondrion, complete genome
          Length = 16438

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 166  tactacaaggcctcgacctca 186
            |||||||||||||||||||||
Sbjct: 4422 tactacaaggcctcgacctca 4442



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>gb|AY442351.1| Huso huso mitochondrion, complete genome
          Length = 16760

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 166  tactacaaggcctcgacctca 186
            |||||||||||||||||||||
Sbjct: 4474 tactacaaggcctcgacctca 4494



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>dbj|AP006356.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT06I08, TM0082b,
             complete sequence
          Length = 93398

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   ctttgccaacaatagtttctc 340
             |||||||||||||||||||||
Sbjct: 91698 ctttgccaacaatagtttctc 91678



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>ref|NM_115647.1| Arabidopsis thaliana unknown protein AT3G57850 mRNA, complete cds
          Length = 273

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  tttggggaggaactcgctat 58
           ||||||||||||||||||||
Sbjct: 118 tttggggaggaactcgctat 137



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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 367     acatcacttcactggaaatg 386
               ||||||||||||||||||||
Sbjct: 1206493 acatcacttcactggaaatg 1206512



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>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence
          Length = 279448

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    gctgcttgtcgtcatggctc 111
             ||||||||||||||||||||
Sbjct: 51120 gctgcttgtcgtcatggctc 51139



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>ref|XM_808059.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508723.50) partial mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  ttggaaacctgaagctgctt 98
           ||||||||||||||||||||
Sbjct: 161 ttggaaacctgaagctgctt 142



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>gb|AC003085.2| Homo sapiens BAC clone CTB-94H21 from 7, complete sequence
          Length = 124836

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 384   atgttggatttatctggcaa 403
             ||||||||||||||||||||
Sbjct: 21920 atgttggatttatctggcaa 21939



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>gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, complete sequence
          Length = 194546

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 384    atgttggatttatctggcaa 403
              ||||||||||||||||||||
Sbjct: 116947 atgttggatttatctggcaa 116928



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>gb|AC051649.21| Homo sapiens chromosome 11, clone RP11-534I22, complete sequence
          Length = 188519

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ggagggtgagctgcctgcag 219
             ||||||||||||||||||||
Sbjct: 24162 ggagggtgagctgcctgcag 24143



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>gb|AC123789.6| Homo sapiens chromosome 11, clone RP5-998N23, complete sequence
          Length = 137691

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    ggagggtgagctgcctgcag 219
              ||||||||||||||||||||
Sbjct: 108652 ggagggtgagctgcctgcag 108633



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>emb|BX294155.1| Pirellula sp. strain 1 complete genome; segment 23/24
          Length = 306550

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    catcgttcaaggatctgtac 245
              ||||||||||||||||||||
Sbjct: 169263 catcgttcaaggatctgtac 169282



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>emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17
          Length = 109016

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    tttggggaggaactcgctat 58
             ||||||||||||||||||||
Sbjct: 19715 tttggggaggaactcgctat 19734



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>emb|AJ585409.1| Brachypelma angustum mitochondrial nd1 gene (partial), 16S rRNA
           gene (partial) and tRNA-Leu gene
          Length = 928

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 agaatctattgttccttgat 464
           ||||||||||||||||||||
Sbjct: 843 agaatctattgttccttgat 824



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>gb|AF087017.1| Homo sapiens H19 gene, complete sequence
          Length = 40558

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   ggagggtgagctgcctgcag 219
             ||||||||||||||||||||
Sbjct: 32327 ggagggtgagctgcctgcag 32308



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>dbj|AK128774.1| Homo sapiens cDNA FLJ45387 fis, clone BRHIP3024703
          Length = 4783

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 ggagggtgagctgcctgcag 219
           ||||||||||||||||||||
Sbjct: 194 ggagggtgagctgcctgcag 213



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>gb|AC004556.1|AC004556 Homo sapiens Chromosome 11p15.5 PAC pDJ998n23 containing H19 gene,
             complete sequence
          Length = 100316

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ggagggtgagctgcctgcag 219
             ||||||||||||||||||||
Sbjct: 29034 ggagggtgagctgcctgcag 29053



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>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence
          Length = 179548

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ccttcattggaaacctgaag 92
             ||||||||||||||||||||
Sbjct: 82103 ccttcattggaaacctgaag 82122


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,624,455
Number of Sequences: 3902068
Number of extensions: 3624455
Number of successful extensions: 62894
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62850
Number of HSP's gapped (non-prelim): 44
length of query: 538
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 515
effective length of database: 17,143,297,704
effective search space: 8828798317560
effective search space used: 8828798317560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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