ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal38o12 |
|---|---|
| Clone Library Name | barley_pub |
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 35.4 bits (80), Expect = 0.11 Identities = 22/58 (37%), Positives = 31/58 (53%) Frame = +3 Query: 387 LTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKATLENAKKFQHFAPNQ 560 L+YL KLK +++D ++Q KE Q LEA +K AT E + F APN+ Sbjct: 1348 LSYLQKLKNNNNDQLRQ----------KEVQAWRLEAEGFKPATEEQLEAFLDTAPNK 1395
>SUDA_EMENI (Q00737) Chromosome segregation protein sudA (DA-box protein sudA)| Length = 1211 Score = 32.7 bits (73), Expect = 0.74 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 186 AEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDIGKDVYDYC 335 AE K + + N R+K+ +LD + +A+ E EKD + KD C Sbjct: 173 AESLKIMHETNSKREKIDELLDFINERLAELEEEKDELRNFQEKDKERRC 222
>DNL4_ARATH (Q9LL84) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)| (Polydeoxyribonucleotide synthase [ATP] 4) Length = 1219 Score = 32.7 bits (73), Expect = 0.74 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 5/109 (4%) Frame = +3 Query: 210 DANDARDKVYHI-LDSARDMIAQTEAEKDATKQ-DIGKDVYDYC---TKAIGISLQFIRS 374 D ND D ++ D+ A E + T++ DI K T A+ +LQ R+ Sbjct: 1059 DENDELDGNNNVSADAEEGNAAGRSVENEETREPDIAKYTESQQRDNTVAVEEALQDSRN 1118 Query: 375 YNTRLTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKATL 521 T + +KL+ H D L L + P QK + G Y+KA + Sbjct: 1119 AKTEMDMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSNRTTGEYRKANV 1167
>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor| (LRP) Length = 4753 Score = 32.3 bits (72), Expect = 0.97 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = -1 Query: 410 LELVKVGETGVVTPDELER 354 LE+VK+GETG+V PDEL R Sbjct: 821 LEVVKIGETGLVHPDELVR 839
>ANT1_ONCVO (P21249) Major antigen (Myosin-like antigen)| Length = 2022 Score = 32.3 bits (72), Expect = 0.97 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Frame = +3 Query: 189 EQQKYLRDANDARDKVYHI---LDSARDMIAQTEAEKDATKQDIGKDVYDYCTKAIGISL 359 +QQ +RD +V+H+ L A+ +A E+E D T++ I + SL Sbjct: 1073 DQQNKIRDLTG---EVHHLEGELKDAKGNVANLESELDTTRERI------HLLGEQNASL 1123 Query: 360 QFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKATLENAKKF 539 Q T L+K+K D L + L A + EA+ L+ + + ++ENAKK+ Sbjct: 1124 Q---------TELNKIKGDIDSLFGENDMLKTAKESNEAEIDRLKQKLQR--SIENAKKY 1172
>PYRB_RALSO (Q8Y1L2) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 323 Score = 31.6 bits (70), Expect = 1.7 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = +3 Query: 222 ARDKVYHILDSARDMIAQTEAEKDATKQDI--GKDVYDYCTKAIGISLQFIRSYNTRLTY 395 +RD + HILD+A+ ++ ++A+++ K + GK V+ +L F S TR T+ Sbjct: 26 SRDILTHILDTAKQFVSVSDADREVKKVPLLRGKSVF---------NLFFENSTRTRTTF 76 Query: 396 LDKLKTHSDDLI 431 K S D+I Sbjct: 77 EIAAKRLSADVI 88
>EP15R_HUMAN (Q9UBC2) Epidermal growth factor receptor substrate 15-like 1| (Eps15-related protein) (Eps15R) Length = 864 Score = 31.2 bits (69), Expect = 2.2 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 4/142 (2%) Frame = +3 Query: 147 EVQKLQ---ELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDIGK 317 EVQ+LQ + E +S E + +DA D D++ RDM++ Sbjct: 420 EVQELQNDLDRETSSLQELEAQKQDAQDRLDEMDQQKAKLRDMLS--------------- 464 Query: 318 DVYDYCTKAIGISLQFIRSYNTRLTYLDK-LKTHSDDLIKQLKFLNPATQQKEAQRLALE 494 DV C Q I S T++ + LK+ DDL + LN Q++ +++ Sbjct: 465 DVRQKCQD----ETQMISSLKTQIQSQESDLKSQEDDLNRAKSELNRLQQEETQLEQSIQ 520 Query: 495 AGMYKKATLENAKKFQHFAPNQ 560 AG + T+ + K NQ Sbjct: 521 AGRVQLETIIKSLKSTQDEINQ 542
>DNAK_CHLAB (Q8GH79) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 659 Score = 31.2 bits (69), Expect = 2.2 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%) Frame = +3 Query: 135 IHRQEVQKL-QELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDI 311 + E+Q++ + E N E+ K R+A+D R++ A MI + E K++I Sbjct: 505 LKEDEIQRMINDAEKNK--EEDKKRREASDVRNE-------ADSMIFRAEKAISDYKENI 555 Query: 312 GKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLA 488 + + TK I ++ +RS +K+K SD+L + ++ + A Q + A A Sbjct: 556 PESL----TKEIEERIEKVRSALKEDAPTEKIKEASDELSRHMQKIGEAMQSQSASAAA 610
>VNSS_TSWV1 (P26002) Nonstructural protein NS-S| Length = 464 Score = 30.8 bits (68), Expect = 2.8 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 84 GDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDAN 218 G L LSP QLH + +++R ++ +L+ KY+ AN Sbjct: 114 GHLKVLSPAQLHSIESIMNRSDITDRFQLQEKDIIPNDKYIEAAN 158
>MUTS_STRT2 (Q5M6I1) DNA mismatch repair protein mutS| Length = 852 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/67 (23%), Positives = 34/67 (50%) Frame = +3 Query: 60 YPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVY 239 Y +++ L DL KL +HR ++++L L+ + E + YL+ + + + Sbjct: 202 YDDVHLIGNSLTDLESSVASKLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSL- 260 Query: 240 HILDSAR 260 +L++AR Sbjct: 261 DLLENAR 267
>MUTS_STRT1 (Q5M1Z0) DNA mismatch repair protein mutS| Length = 852 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/67 (23%), Positives = 34/67 (50%) Frame = +3 Query: 60 YPKAYIMSGDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVY 239 Y +++ L DL KL +HR ++++L L+ + E + YL+ + + + Sbjct: 202 YDDVHLIGNSLTDLESSVASKLLQYVHRTQMRELSHLQKAQHYEIKDYLQMSYATKSSL- 260 Query: 240 HILDSAR 260 +L++AR Sbjct: 261 DLLENAR 267
>RS2_AQUAE (O67809) 30S ribosomal protein S2| Length = 274 Score = 30.4 bits (67), Expect = 3.7 Identities = 27/107 (25%), Positives = 47/107 (43%) Frame = +3 Query: 129 DLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQD 308 D++ ++EV+ L+ + + +RD D ++ I+D+ R+ IA +EA K Sbjct: 127 DVLPKKEVRNLRR-KMEKLRKLYNGIRDMKKLPDVIW-IVDTVREKIAVSEARK------ 178 Query: 309 IGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFL 449 +GI + I N T +D +DD IK +K L Sbjct: 179 ------------LGIPIVAIADSNCDPTVIDYTIPGNDDAIKSIKLL 213
>KIF5C_MOUSE (P28738) Kinesin heavy chain isoform 5C (Kinesin heavy chain| neuron-specific 2) Length = 956 Score = 30.0 bits (66), Expect = 4.8 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Frame = +3 Query: 123 LADLIHRQEVQKLQELEFNSYAE-QQKYLRDANDARDKVYHILDSARDMIAQTEAEKDAT 299 L L +EV+K E + S+ E QK L D ++ I+D RD+ + + E++ Sbjct: 689 LTRLQDAEEVKKALEQQMESHREAHQKQLSRLRDEIEEKQRIIDEIRDLNQKLQLEQERL 748 Query: 300 KQDIGK 317 D K Sbjct: 749 SSDYNK 754
>ZN212_HUMAN (Q9UDV6) Zinc finger protein 212 (Zinc finger protein C2H2-150)| Length = 495 Score = 30.0 bits (66), Expect = 4.8 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Frame = +3 Query: 78 MSGDLVDLSPGQLHKLADLIHRQEVQKLQE------LEFNSYAEQQKYL 206 M GDL + PG H ++ +QE+Q QE EF+ AE+Q +L Sbjct: 196 MLGDLEEEGPGGAHPAGGVMIKQELQYTQEGPADLPGEFSCIAEEQAFL 244
>DNAK_CHLPN (P27542) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) (75 kDa membrane protein) Length = 660 Score = 29.6 bits (65), Expect = 6.3 Identities = 26/126 (20%), Positives = 58/126 (46%), Gaps = 1/126 (0%) Frame = +3 Query: 135 IHRQEVQKL-QELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDI 311 + E+Q++ ++ E N E+ K R+A+DA+++ ++ A I +D Sbjct: 505 LQEDEIQRMVRDAEINK--EEDKKRREASDAKNEADSMIFRAEKAI-----------KDY 551 Query: 312 GKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLAL 491 + + + K I ++ +R+ ++K+K ++DL K ++ + + Q + A A Sbjct: 552 KEQIPETLVKEIEERIENVRNALKDDAPIEKIKEVTEDLSKHMQKIGESMQSQSASAAAS 611 Query: 492 EAGMYK 509 A K Sbjct: 612 SAANAK 617
>GRPE_CANGA (Q6FPH2) GrpE protein homolog, mitochondrial precursor| Length = 231 Score = 29.6 bits (65), Expect = 6.3 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Frame = +3 Query: 87 DLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSAR-- 260 + +L L +AD + QEV K + SYA QK+ +D ++ D H L + + Sbjct: 85 EAAELKDRLLRSVADFRNLQEVTKKDVEKAKSYA-LQKFAKDLLESVDNFGHALGAFKEE 143 Query: 261 DMIAQTEAEKDATKQDIGKDVYDYCTKAIGI 353 D+ E T + +DV++ K GI Sbjct: 144 DLEKSKEISDLYTGVKMTRDVFEKTLKKYGI 174
>CAR14_HUMAN (Q9BXL6) Caspase recruitment domain-containing protein 14| (CARD-containing MAGUK protein 2) (Carma 2) Length = 1004 Score = 29.6 bits (65), Expect = 6.3 Identities = 21/67 (31%), Positives = 34/67 (50%) Frame = +3 Query: 111 QLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEK 290 Q K+A ++R++V LQ E QK RD+ Y DSA+ I+Q+ EK Sbjct: 334 QKSKMACQLYREKVNALQA----QVCELQK-------ERDQAYSARDSAQREISQSLVEK 382 Query: 291 DATKQDI 311 D+ ++ + Sbjct: 383 DSLRRQV 389
>ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (Fragment) Length = 441 Score = 29.6 bits (65), Expect = 6.3 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 10/133 (7%) Frame = +3 Query: 117 HKLADLIHRQEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDA 296 HK+ + Q ++E + + E +K L++ DAR+K + + + + + Sbjct: 98 HKVTKARLTDKHQSIEEAKSVAMCEMEKKLKEERDAREKAENRVVQIEKQCSMLDVDLKQ 157 Query: 297 TKQDI-----GKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPAT 461 ++Q + KD + K ++LQ + N RL ++LKT + + LK L Sbjct: 158 SQQKLEHLIENKDRMEDEVK--NLTLQLEQESNKRLLLQNELKTQAFE-ADNLKGLEKQM 214 Query: 462 QQK-----EAQRL 485 +Q+ EA+RL Sbjct: 215 KQEINTLLEAKRL 227
>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein SMC2)| Length = 1170 Score = 29.6 bits (65), Expect = 6.3 Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 13/166 (7%) Frame = +3 Query: 111 QLHKLADLIHR-QEVQKLQELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAE 287 +L++L LI + Q+ +K ELE + + +K+ L + + + Sbjct: 890 ELNELETLIKKKQDEKKSSELELQKLVHDLNKYKSNTNNMEKIIEDLRQKHEFLEDFDLV 949 Query: 288 KDATKQDIGKDVYDYC--TKAIGISLQFIR-----SYNTRLTYLDKLKTHSDDLIK---- 434 ++ KQ+ G D+ Y +K + Q +R + + ++K + +IK Sbjct: 950 RNIVKQNEGIDLDTYRERSKQLNEKFQELRKKVNPNIMNMIENVEKKEAALKTMIKTIEK 1009 Query: 435 -QLKFLNPATQQKEAQRLALEAGMYKKATLENAKKFQHFAPNQFSK 569 ++K ++ E +R L ++K TL+ F PN F+K Sbjct: 1010 DKMKIQETISKLNEYKRETL-VKTWEKVTLDFGNIFADLLPNSFAK 1054
>EP15R_MOUSE (Q60902) Epidermal growth factor receptor substrate 15-like 1| (Eps15-related protein) (Eps15R) (Epidermal growth factor receptor pathway substrate 15-related sequence) (Eps15-rs) Length = 907 Score = 29.6 bits (65), Expect = 6.3 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 4/134 (2%) Frame = +3 Query: 147 EVQKLQ---ELEFNSYAEQQKYLRDANDARDKVYHILDSARDMIAQTEAEKDATKQDIGK 317 EVQ+LQ + E +S E + +DA D D++ RDM++ Sbjct: 418 EVQELQNDLDRETSSLQELEAQKQDAQDRLDEMDQQKAKLRDMLS--------------- 462 Query: 318 DVYDYCTKAIGISLQFIRSYNTRLTYLDK-LKTHSDDLIKQLKFLNPATQQKEAQRLALE 494 DV C Q I S T++ + LK+ DDL + LN Q++ +++ Sbjct: 463 DVRQKCQD----ETQTISSLKTQIQSQESDLKSQEDDLNRAKSELNRLQQEETQLEQSIQ 518 Query: 495 AGMYKKATLENAKK 536 AG + T+ + K Sbjct: 519 AGRAQLETILRSLK 532
>CCRK_PONPY (Q5R7I7) Cell cycle-related kinase (EC 2.7.11.22)| Length = 346 Score = 29.3 bits (64), Expect = 8.2 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Frame = +3 Query: 72 YIMSGDLVDLSPGQLHKLADLIHRQ---EVQKLQELEFNSYAEQQK 200 ++ +G++V L L +L D I Q E++ LQE+E N Y Q K Sbjct: 23 HVETGEIVALKKVALRRLEDGIPNQALREIKALQEMEDNQYVVQLK 68
>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)| Length = 875 Score = 29.3 bits (64), Expect = 8.2 Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 9/112 (8%) Frame = +3 Query: 186 AEQQKYLRDANDARDKVYHILDSARDMIAQTE---------AEKDATKQDIGKDVYDYCT 338 AE+ L AN+ R ++ L A +A+TE + KQ+I K+ DY Sbjct: 544 AEKNGQLVAANEIRARLEQQLADATQQLAKTEQLLVQQQKSGPMETDKQEINKEESDYLL 603 Query: 339 KAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLALE 494 A+ I + R N L D L + +DL L QRLALE Sbjct: 604 TALDIMYKNARILNPNLGGRD-LSQNLNDLQFGL---------ASEQRLALE 645
>VNSS_TSWVL (P26003) Nonstructural protein NS-S| Length = 467 Score = 29.3 bits (64), Expect = 8.2 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +3 Query: 84 GDLVDLSPGQLHKLADLIHRQEVQKLQELEFNSYAEQQKYLRDAN 218 G L LSP QLH + ++R +++ +L+ +Y+ AN Sbjct: 114 GHLKVLSPDQLHSIGSTMNRSDIKDRFQLQEKDIIPNDRYIEAAN 158
>Y343_METJA (Q57789) Hypothetical protein MJ0343| Length = 849 Score = 29.3 bits (64), Expect = 8.2 Identities = 19/72 (26%), Positives = 38/72 (52%) Frame = +3 Query: 279 EAEKDATKQDIGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPA 458 E E DA+K +I +DY + L+ ++ NT++ +KT++D ++KQ+ + Sbjct: 74 EIEADASKMNIN---FDYDLSKLKSELEQLK--NTKID----IKTNTDQILKQINKIKSE 124 Query: 459 TQQKEAQRLALE 494 +K+ R +E Sbjct: 125 LSEKQTIRAKVE 136 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,931,438 Number of Sequences: 219361 Number of extensions: 1500261 Number of successful extensions: 5349 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5347 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
