ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal38o12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 1114 bits (562), Expect = 0.0 Identities = 565/566 (99%) Strand = Plus / Plus Query: 4 cccttaccttgtgctcgtggtgaagctgatccttccattgcttggtgcccccaagctacc 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cccttaccttgtgctcgtggtgaagctgatccttccattgcttggtgcccccaagctacc 60 Query: 64 ccaaggcttacatcatgtcaggtgacctagttgatttaagtccagggcagttgcataagc 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ccaaggcttacatcatgtcaggtgacctagttgatttaagtccagggcagttgcataagc 120 Query: 124 tagccgatctgatccatcgacaagaagtccagaagcttcaagagctcgagttcaactcgt 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tagccgatctgatccatcgacaagaagtccagaagcttcaagagctcgagttcaactcgt 180 Query: 184 atgcagagcaacaaaagtatctccgtgacgccaatgatgcccgcgataaggtgtatcaca 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atgcagagcaacaaaagtatctccgtgacgccaatgatgcccgcgataaggtgtatcaca 240 Query: 244 tccttgacagtgcacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagc 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tccttgacagtgcacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagc 300 Query: 304 aagatattggcaaggatgtctatgactactgcaccaaggccatcggaatatctctccaat 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aagatattggcaaggatgtctatgactactgcaccaaggccatcggaatatctctccaat 360 Query: 364 tcatccggagttacaacacccgtctcacctaccttgacaagctcaagacccacagtgatg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 tcatccggagttacaacacccgtctcacctaccttgacaagctcaagacccacagtgatg 420 Query: 424 atctcatcaagcagctaaagttcctcaatccagccacccaacagaaggaggcccagcgcc 483 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 421 atctcatcaagcagctaaagttcctcaatctagccacccaacagaaggaggcccagcgcc 480 Query: 484 ttgcccttgaggctggcatgtataagaaagccacgctggagaatgccaaaaagtttcaac 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ttgcccttgaggctggcatgtataagaaagccacgctggagaatgccaaaaagtttcaac 540 Query: 544 actttgcaccaaatcaattctcaaaa 569 |||||||||||||||||||||||||| Sbjct: 541 actttgcaccaaatcaattctcaaaa 566
>gb|U41016.1| Caenorhabditis elegans cosmid R11G1, complete sequence Length = 34496 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 527 tgccaaaaagtttcaacacttt 548 |||||||||||||||||||||| Sbjct: 7678 tgccaaaaagtttcaacacttt 7657
>emb|BX649209.1| Mycobacterium ulcerans plasmid pMUM001, complete plasmid genome Length = 174155 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 476 ccagcgccttgcccttgaggctggc 500 ||||||||| ||||||||||||||| Sbjct: 26729 ccagcgcctggcccttgaggctggc 26753 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 476 ccagcgccttgcccttgaggctggc 500 ||||||||| ||||||||||||||| Sbjct: 20925 ccagcgcctggcccttgaggctggc 20901
>gb|AC110556.15| Mus musculus chromosome 5, clone RP23-250G21, complete sequence Length = 214445 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 469 aggaggcccagcgccttgcccttga 493 ||||||||||||||||||| ||||| Sbjct: 180500 aggaggcccagcgccttgcacttga 180476
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 476 ccagcgccttgcccttgaggc 496 ||||||||||||||||||||| Sbjct: 1543666 ccagcgccttgcccttgaggc 1543646
>gb|AC163992.9| Mus musculus chromosome 1, clone RP23-193H10, complete sequence Length = 198062 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tagttgatttaagtccaggg 110 |||||||||||||||||||| Sbjct: 120328 tagttgatttaagtccaggg 120347
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gctcaagacccacagtgatg 423 |||||||||||||||||||| Sbjct: 115381 gctcaagacccacagtgatg 115400
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 480 cgccttgcccttgaggctgg 499 |||||||||||||||||||| Sbjct: 842251 cgccttgcccttgaggctgg 842270
>ref|XM_419142.1| PREDICTED: Gallus gallus similar to erythrocyte protein band 4.1-like 3 (LOC421055), mRNA Length = 6756 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 ctggagaatgccaaaaagtt 538 |||||||||||||||||||| Sbjct: 3148 ctggagaatgccaaaaagtt 3167 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 519 ctggagaatgccaaaaagtt 538 |||||||||||||||||||| Sbjct: 2755 ctggagaatgccaaaaagtt 2774
>ref|XM_457812.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C03498g) partial mRNA Length = 3774 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 accaagcaagatattggcaa 316 |||||||||||||||||||| Sbjct: 1747 accaagcaagatattggcaa 1766
>gb|AC140554.3| Mus musculus BAC clone RP23-151C18 from chromosome 18, complete sequence Length = 215716 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ggctggcatgtataagaaag 513 |||||||||||||||||||| Sbjct: 47145 ggctggcatgtataagaaag 47126
>ref|XM_568184.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNL06610) partial mRNA Length = 3711 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 480 cgccttgcccttgaggctgg 499 |||||||||||||||||||| Sbjct: 625 cgccttgcccttgaggctgg 606
>gb|AC130204.4| Mus musculus BAC clone RP24-427M16 from chromosome 18, complete sequence Length = 167394 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 ggctggcatgtataagaaag 513 |||||||||||||||||||| Sbjct: 105655 ggctggcatgtataagaaag 105636
>gb|AC069280.10| Homo sapiens BAC clone RP11-3P22 from 7, complete sequence Length = 167563 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 caccaaatcaattctcaaaa 569 |||||||||||||||||||| Sbjct: 134949 caccaaatcaattctcaaaa 134968
>ref|XM_781740.1| PREDICTED: Strongylocentrotus purpuratus similar to aldehyde dehydrogenase 2, like (LOC581754), mRNA Length = 1767 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 ataagctagccgatctgatc 137 |||||||||||||||||||| Sbjct: 527 ataagctagccgatctgatc 546
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 accaagcaagatattggcaa 316 |||||||||||||||||||| Sbjct: 281073 accaagcaagatattggcaa 281092
>emb|AL645823.12| Mouse DNA sequence from clone RP23-288I22 on chromosome 11 Contains the Gabra6 gene for subunit alpha 6 gamma-aminobutyric acid (GABA-A) receptor, complete sequence Length = 132024 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 caagatattggcaaggatgt 322 |||||||||||||||||||| Sbjct: 120263 caagatattggcaaggatgt 120244
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gcccagcgccttgcccttga 493 |||||||||||||||||||| Sbjct: 3121255 gcccagcgccttgcccttga 3121236
>gb|AC008427.9| Homo sapiens chromosome 5 clone CTC-307M15, complete sequence Length = 175501 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 ggtgaagctgatccttccattgcttggt 49 ||||||||||||| ||||||| |||||| Sbjct: 5546 ggtgaagctgatctttccatttcttggt 5573
>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence Length = 178917 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 ggaatatctctccaattcat 367 |||||||||||||||||||| Sbjct: 97894 ggaatatctctccaattcat 97913
>gb|AF170801.5| Homo sapiens chromosome 8 clone CTA-392B3 map p23, complete sequence Length = 131992 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gctcaagacccacagtgatg 423 |||||||||||||||||||| Sbjct: 29823 gctcaagacccacagtgatg 29842
>gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromosome unknown, complete sequence Length = 159245 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 ggaatatctctccaattcat 367 |||||||||||||||||||| Sbjct: 67066 ggaatatctctccaattcat 67047
>gb|AC103776.3| Homo sapiens chromosome 8, clone RP11-42O14, complete sequence Length = 165995 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 gctcaagacccacagtgatg 423 |||||||||||||||||||| Sbjct: 32794 gctcaagacccacagtgatg 32813
>gb|AC019257.3| Homo sapiens chromosome 8, clone RP11-439C15, complete sequence Length = 220201 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 gctcaagacccacagtgatg 423 |||||||||||||||||||| Sbjct: 73237 gctcaagacccacagtgatg 73218
>gb|AC008545.3|AC008545 Homo sapiens chromosome 5 clone CTC-500L4, complete sequence Length = 90493 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 ggtgaagctgatccttccattgcttggt 49 ||||||||||||| ||||||| |||||| Sbjct: 51026 ggtgaagctgatctttccatttcttggt 51053
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 gcccagcgccttgcccttga 493 |||||||||||||||||||| Sbjct: 3128563 gcccagcgccttgcccttga 3128544
>emb|AJ493186.1|ALO493186 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone WA3 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493185.1|ALO493185 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone SE4 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493184.1|ALO493184 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone SE1 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493182.1|ALO493182 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone RS1B Length = 792 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493181.1|ALO493181 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Pohnpei 1 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493180.1|ALO493180 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Palau16 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493179.1|ALO493179 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Palau5 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493178.1|ALO493178 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Moorea1 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493177.1|ALO493177 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CLJ-3 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493176.1|ALO493176 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH62, isoform b Length = 794 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493175.1|ALO493175 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH62, isoform a Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493174.1|ALO493174 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH49, isoform a Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493173.1|ALO493173 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH49, isoform b Length = 794 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493172.1|ALO493172 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH48 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493171.1|ALO493171 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-050 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493170.1|ALO493170 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-047 Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493169.1|ALO493169 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-046, isoform b Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493168.1|ALO493168 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-046, isoform a Length = 795 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 aggaggcccagcgccttgcc 488 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,261,884 Number of Sequences: 3902068 Number of extensions: 4261884 Number of successful extensions: 79485 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79314 Number of HSP's gapped (non-prelim): 171 length of query: 569 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 546 effective length of database: 17,143,297,704 effective search space: 9360240546384 effective search space used: 9360240546384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
