ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal38o11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1053 bits (531), Expect = 0.0 Identities = 556/564 (98%), Gaps = 1/564 (0%) Strand = Plus / Plus Query: 3 tgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacag 62 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 81 tgatcgccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacag 139 Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 199 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 259 Query: 183 aggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgaca 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 aggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgaca 319 Query: 243 agtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagg 302 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 agtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagagggaagg 379 Query: 303 gcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctca 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 gcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctca 439 Query: 363 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 499 Query: 423 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 559 Query: 483 tgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaag 542 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 560 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 619 Query: 543 gaaaatcattncagngtgagcttg 566 |||||||||| ||| ||||||||| Sbjct: 620 gaaaatcattccagtgtgagcttg 643
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 961 bits (485), Expect = 0.0 Identities = 545/565 (96%), Gaps = 2/565 (0%) Strand = Plus / Plus Query: 2 ctgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcaca 61 |||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct: 1 ctgatcaccagcacagccgcgc--atccaccgctgctagcaaggtcgagcaagcagcaca 58 Query: 62 gagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttc 121 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 59 gagatggctgctgccttctcctccaccgtcggtgccccggcttctacgccgaccaacttc 118 Query: 122 ctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 ctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcc 178 Query: 182 aaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacaccgac 241 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct: 179 aaggccaacaggttcacggtcatggcagcggaaaacatcgacgagaagaggaacaccgac 238 Query: 242 aagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaag 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 aagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaag 298 Query: 302 ggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctc 361 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 299 ggcatcgtggactccctcttccaggcgcccactggcgacggcacccacgaggccgtcctc 358 Query: 362 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatggga 421 ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 359 agctcatacgagtacgtcagccagggactcaagaagtacgacttcgacaacaccatggga 418 Query: 422 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 481 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 419 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaagaacttc 478 Query: 482 atgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaa 541 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 479 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 538 Query: 542 ggaaaatcattncagngtgagcttg 566 |||||||| || ||| ||||||||| Sbjct: 539 ggaaaatccttccagtgtgagcttg 563
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Plus Query: 100 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgt 5577 Query: 160 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5578 gaactaccatggcaagagctccaaggccaacaggttcacagtcatggcagcggagaacat 5637 Query: 220 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5638 cgacgagaagaggaacaccgacaagtggaagggtcttgcgtacgatatctccgacgacca 5697 Query: 280 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacgggcga 339 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 5698 gcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacggggca 5757 Query: 340 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 cggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcggaagta 5817 Query: 400 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 cgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgt 5877 Query: 460 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 502 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5878 tgtccatctctccaaaaacttcatgaccctgcccaacatcaag 5920 Score = 301 bits (152), Expect = 1e-78 Identities = 278/321 (86%) Strand = Plus / Plus Query: 244 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 2939 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 2998 Query: 304 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 363 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 2999 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 3058 Query: 364 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 423 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3059 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 3118 Query: 424 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 483 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 3119 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 3178 Query: 484 gaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagg 543 ||| || |||||||||||| | || ||||| |||||||||||||||||||||| || || Sbjct: 3179 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 3238 Query: 544 aaaatcattncagngtgagct 564 || || || ||| ||||||| Sbjct: 3239 caagtcgttccagtgtgagct 3259 Score = 182 bits (92), Expect = 8e-43 Identities = 99/100 (99%), Gaps = 1/100 (1%) Strand = Plus / Plus Query: 2 ctgatcaccagcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcaca 61 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 5300 ctgatcaccagcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcaca 5358 Query: 62 gagatggctgctgccttctcctccaccgtcggggctccgg 101 |||||||||||||||||||||||||||||||||||||||| Sbjct: 5359 gagatggctgctgccttctcctccaccgtcggggctccgg 5398 Score = 113 bits (57), Expect = 6e-22 Identities = 63/66 (95%) Strand = Plus / Plus Query: 501 agatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattncagngtg 560 ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 561 agcttg 566 |||||| Sbjct: 6130 agcttg 6135
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 728 bits (367), Expect = 0.0 Identities = 382/388 (98%) Strand = Plus / Plus Query: 179 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tccaaggccaacaggttcacagtcatggcagcggagaacatcgacgagaagaggaacacc 60 Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacaagtggaagggtcttgctaccgatatctccgacgaccagcaggacatcaccagaggg 120 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 180 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 240 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 300 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 301 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggt 360 Query: 539 caaggaaaatcattncagngtgagcttg 566 |||||||||||||| ||| ||||||||| Sbjct: 361 caaggaaaatcattccagtgtgagcttg 388
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 450 bits (227), Expect = e-123 Identities = 302/328 (92%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 257 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 316 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| ||||| ||||| || ||||||||||||| |||||| |||||||||||||||||| Sbjct: 317 aagggtatcgtcgactccctgttccaggcgcccatgggcgatggcacccacgaggccgtc 376 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 377 ctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 436 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 437 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 496 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 497 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 556 Query: 539 caaggaaaatcattncagngtgagcttg 566 || || ||||| || ||| ||||||||| Sbjct: 557 caggggaaatccttccagtgtgagcttg 584 Score = 228 bits (115), Expect = 2e-56 Identities = 139/147 (94%) Strand = Plus / Plus Query: 61 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 120 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct: 76 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135 Query: 121 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 180 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 136 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 195 Query: 181 caaggccaacaggttcacagtcatggc 207 |||||||||||||||||| |||||||| Sbjct: 196 caaggccaacaggttcaccgtcatggc 222
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 430 bits (217), Expect = e-117 Identities = 299/328 (91%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||||||||||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct: 247 gacaagtggaagggcctcgcctacgatatctccgacgaccagcaggacatcaccaggggt 306 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| ||||| ||||| | ||||||||||||| |||||| || ||||||||||||||| Sbjct: 307 aagggtatcgtcgactccttgttccaggcgcccatgggcgatggnacccacgaggccgtc 366 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 367 ctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacaccatg 426 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| ||| Sbjct: 427 ggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaagaac 486 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct: 487 ttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaagggt 546 Query: 539 caaggaaaatcattncagngtgagcttg 566 || || ||||| || ||| ||||||||| Sbjct: 547 caggggaaatccttccagtgtgagcttg 574 Score = 222 bits (112), Expect = 1e-54 Identities = 138/147 (93%) Strand = Plus / Plus Query: 61 agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 120 ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||| Sbjct: 66 agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125 Query: 121 cctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctc 180 |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 126 cctcggcaacaagctcaagaagcaggtgacctcggcagtgaactaccatggcaagagctt 185 Query: 181 caaggccaacaggttcacagtcatggc 207 |||||||||||||||||| |||||||| Sbjct: 186 caaggccaacaggttcaccgtcatggc 212
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 383 bits (193), Expect = e-103 Identities = 292/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 204 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 263 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 264 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 323 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 324 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 383 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 384 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 443 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 444 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 503 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 504 cagggaaaatccttccagtgtgagct 529 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 25 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 85 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 144 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 145 acatcaacaggttca 159
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 383 bits (193), Expect = e-103 Identities = 292/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 241 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 300 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 301 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 360 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 361 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 420 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 421 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 480 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 481 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 540 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 541 cagggaaaatccttccagtgtgagct 566 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 62 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 122 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 181 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 182 acatcaacaggttca 196
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 383 bits (193), Expect = e-103 Identities = 292/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 359 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 360 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 419 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 420 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 479 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 480 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 539 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 540 cagggaaaatccttccagtgtgagct 565 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 181 acatcaacaggttca 195
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 383 bits (193), Expect = e-103 Identities = 292/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 24 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 83 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 84 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 143 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 144 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 203 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 204 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 263 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 264 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 323 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 324 cagggaaaatccttccagtgtgagct 349
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 383 bits (193), Expect = e-103 Identities = 292/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 245 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 304 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 305 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 364 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 365 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 424 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 425 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 484 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 485 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 544 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 545 cagggaaaatccttccagtgtgagct 570 Score = 165 bits (83), Expect = 2e-37 Identities = 122/135 (90%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 66 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 126 tggggaagaagctgaaaaagcaggtgacatcggcggtgaactaccatggcaagagctcca 185 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 186 acatcaacaggttca 200
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 383 bits (193), Expect = e-103 Identities = 292/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 239 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 298 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 299 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 358 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 359 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 418 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 419 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 478 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 479 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 538 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 539 cagggaaaatccttccagtgtgagct 564 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 60 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 120 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 179 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 180 acatcaacaggttca 194
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 375 bits (189), Expect = e-100 Identities = 291/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 212 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 271 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 272 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 331 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 332 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 391 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||| Sbjct: 392 ggaggcttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaac 451 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct: 452 ttcatgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggt 511 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 512 cagggaaaatccttccagtgtgagct 537 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 33 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 93 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 152 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 153 acatcaacaggttca 167
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 375 bits (189), Expect = e-100 Identities = 291/326 (89%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 252 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 311 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 312 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 371 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||||||| |||||||||| || | | |||||||||||||||||||||| Sbjct: 372 ctcagctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatg 431 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||| Sbjct: 432 ggaggcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaac 491 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct: 492 ttcatgaccctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggt 551 Query: 539 caaggaaaatcattncagngtgagct 564 || |||||||| || ||| ||||||| Sbjct: 552 cagggaaaatccttccagtgtgagct 577 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 73 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 133 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 192 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 193 acatcaacaggttca 207
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 307 bits (155), Expect = 2e-80 Identities = 259/294 (88%) Strand = Plus / Plus Query: 244 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 |||||||||||| || ||||| |||||||| ||||||||||||||||| || ||||| || Sbjct: 217 gtggaagggtctcgcttacgacatctccgatgaccagcaggacatcacgagggggaaagg 276 Query: 304 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 363 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 277 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctgag 336 Query: 364 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 423 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 337 ctcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacgg 396 Query: 424 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 483 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 397 gctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcat 456 Query: 484 gaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaaggg 537 ||| || |||||||||||| |||| ||||| |||||||||||||||||||||| Sbjct: 457 gacactccccaacatcaaggtccctctcatcctgggtatctggggaggcaaggg 510 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 64 gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 123 ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| |||||| Sbjct: 25 gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84 Query: 124 cgggaagaagctcaagaagcagg 146 |||||||||| | |||||||||| Sbjct: 85 cgggaagaaggtgaagaagcagg 107
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 301 bits (152), Expect = 1e-78 Identities = 278/321 (86%) Strand = Plus / Plus Query: 244 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 |||||||||||| || ||||| ||||| |||||||||||||||||||| | ||||| || Sbjct: 370 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaaagg 429 Query: 304 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcag 363 |||||||||||| || |||||||| |||| |||||||||||||||||||||| |||| || Sbjct: 430 catcgtggactccctgttccaggcccccatgggcgacggcacccacgaggccatcctaag 489 Query: 364 ctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggagg 423 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 490 ctcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacgg 549 Query: 424 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 483 | |||||||| || || |||||||||||||| | ||||| ||| |||| |||||||| Sbjct: 550 gctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcat 609 Query: 484 gaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagg 543 ||| || |||||||||||| | || ||||| |||||||||||||||||||||| || || Sbjct: 610 gacactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacaggg 669 Query: 544 aaaatcattncagngtgagct 564 || || || ||| ||||||| Sbjct: 670 caagtcgttccagtgtgagct 690
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 248 bits (125), Expect = 2e-62 Identities = 182/202 (90%) Strand = Plus / Plus Query: 363 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 422 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 423 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 482 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 483 tgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaag 542 ||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 543 gaaaatcattncagngtgagct 564 ||||||| || ||| ||||||| Sbjct: 507 gaaaatccttccagtgtgagct 528 Score = 172 bits (87), Expect = 8e-40 Identities = 123/135 (91%) Strand = Plus / Plus Query: 63 agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 122 |||||||||||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct: 61 agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120 Query: 123 tcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccatggcaagagctcca 182 | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 121 tggggaagaagctgaagaagcaggtgacatcggcggtgaactaccatggcaagagctcca 180 Query: 183 aggccaacaggttca 197 | ||||||||||| Sbjct: 181 acatcaacaggttca 195 Score = 89.7 bits (45), Expect = 9e-15 Identities = 78/89 (87%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 240 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 299 Query: 299 aagggcatcgtggactcgctcttccaggc 327 ||||| |||| ||||| || |||||||| Sbjct: 300 aagggtttcgtcgactcccttttccaggc 328
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 228 bits (115), Expect = 2e-56 Identities = 154/168 (91%) Strand = Plus / Minus Query: 397 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 456 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 457 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 516 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 517 gggtatctggggaggcaagggtcaaggaaaatcattncagngtgagct 564 |||||||||||||||||||||||| |||||||| || ||| ||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 109268 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 109706 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 109647 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 109646 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 109587 Query: 359 ctcagctcctacgagtacgtcagccaggg 387 |||||||||||||||||| |||||||||| Sbjct: 109586 ctcagctcctacgagtacctcagccaggg 109558 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 244 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 113205 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 113146 Query: 304 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 354 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113145 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 110 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 169 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 109838 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 109779 Query: 170 ggcaagagctccaaggccaacaggttca 197 |||||||||||||| ||||||||||| Sbjct: 109778 ggcaagagctccaacatcaacaggttca 109751 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 63 agatggctgctgccttctcctccaccgtcggggctccgg 101 |||||||||||||||||||||||||||| || ||||||| Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 228 bits (115), Expect = 2e-56 Identities = 154/168 (91%) Strand = Plus / Minus Query: 397 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 456 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 457 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 516 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 517 gggtatctggggaggcaagggtcaaggaaaatcattncagngtgagct 564 |||||||||||||||||||||||| |||||||| || ||| ||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 31145 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 31583 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 31524 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 31523 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 31464 Query: 359 ctcagctcctacgagtacgtcagccaggg 387 |||||||||||||||||| |||||||||| Sbjct: 31463 ctcagctcctacgagtacctcagccaggg 31435 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 244 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 35082 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 35023 Query: 304 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 354 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35022 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 110 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 169 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 31715 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 31656 Query: 170 ggcaagagctccaaggccaacaggttca 197 |||||||||||||| ||||||||||| Sbjct: 31655 ggcaagagctccaacatcaacaggttca 31628 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 63 agatggctgctgccttctcctccaccgtcggggctccgg 101 |||||||||||||||||||||||||||| || ||||||| Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 228 bits (115), Expect = 2e-56 Identities = 154/168 (91%) Strand = Plus / Minus Query: 397 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 456 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 457 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 516 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 517 gggtatctggggaggcaagggtcaaggaaaatcattncagngtgagct 564 |||||||||||||||||||||||| |||||||| || ||| ||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 28304407 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28304845 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28304786 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28304785 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28304726 Query: 359 ctcagctcctacgagtacgtcagccaggg 387 |||||||||||||||||| |||||||||| Sbjct: 28304725 ctcagctcctacgagtacctcagccaggg 28304697 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 244 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28308344 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28308285 Query: 304 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 354 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308284 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 110 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 169 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28304977 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28304918 Query: 170 ggcaagagctccaaggccaacaggttca 197 |||||||||||||| ||||||||||| Sbjct: 28304917 ggcaagagctccaacatcaacaggttca 28304890 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 63 agatggctgctgccttctcctccaccgtcggggctccgg 101 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 228 bits (115), Expect = 2e-56 Identities = 154/168 (91%) Strand = Plus / Minus Query: 397 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 456 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 457 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatntt 516 || ||||| ||||||| |||||||||||||| |||||||||||| |||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 517 gggtatctggggaggcaagggtcaaggaaaatcattncagngtgagct 564 |||||||||||||||||||||||| |||||||| || ||| ||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagct 28286856 Score = 176 bits (89), Expect = 5e-41 Identities = 134/149 (89%) Strand = Plus / Minus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| |||||||||||| || ||||| |||||||| |||||||||||||||||||| ||| Sbjct: 28287294 gacaggtggaagggtctcgcctacgacatctccgatgaccagcaggacatcaccaggggg 28287235 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 ||||| |||| ||||| || |||||||| |||||||| || |||||||||||||||||| Sbjct: 28287234 aagggtttcgtcgactcccttttccaggctcccacgggtgatggcacccacgaggccgtc 28287175 Query: 359 ctcagctcctacgagtacgtcagccaggg 387 |||||||||||||||||| |||||||||| Sbjct: 28287174 ctcagctcctacgagtacctcagccaggg 28287146 Score = 125 bits (63), Expect = 2e-25 Identities = 99/111 (89%) Strand = Plus / Minus Query: 244 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| Sbjct: 28290793 gtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaaggg 28290734 Query: 304 catcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 354 | |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290733 cctcgtcgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 119 bits (60), Expect = 1e-23 Identities = 81/88 (92%) Strand = Plus / Minus Query: 110 ccgaccaacttcctcgggaagaagctcaagaagcaggtgacctcggccgtgaactaccat 169 |||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 28287426 ccgaccaacttcctggggaagaagctgaagaagcaggtgacatcggcggtgaactaccat 28287367 Query: 170 ggcaagagctccaaggccaacaggttca 197 |||||||||||||| ||||||||||| Sbjct: 28287366 ggcaagagctccaacatcaacaggttca 28287339 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 63 agatggctgctgccttctcctccaccgtcggggctccgg 101 |||||||||||||||||||||||||||| || ||||||| Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 198 bits (100), Expect = 1e-47 Identities = 258/311 (82%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 |||||| |||| ||| |||||||||||||| | ||| ||||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatgggggacggcacccacgtcgccgtg 332 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 |||||||||||||| ||||||||| | || ||||| ||||||||||||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatctggggaggcaaaggc 512 Query: 539 caaggaaaatc 549 || |||||||| Sbjct: 513 cagggaaaatc 523 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 65 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 118 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 119 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 175 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 176 agctcca 182 ||||||| Sbjct: 141 agctcca 147
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 190 bits (96), Expect = 3e-45 Identities = 230/275 (83%) Strand = Plus / Plus Query: 275 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 334 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 235 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 294 Query: 335 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 394 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 295 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 354 Query: 395 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 454 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 355 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 414 Query: 455 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatn 514 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 415 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 474 Query: 515 ttgggtatctggggaggcaagggtcaaggaaaatc 549 |||||||||||||||||||| |||||||| ||||| Sbjct: 475 ttgggtatctggggaggcaaaggtcaagggaaatc 509
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 190 bits (96), Expect = 3e-45 Identities = 230/275 (83%) Strand = Plus / Plus Query: 275 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 334 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 98 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 157 Query: 335 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 394 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 158 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 217 Query: 395 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 454 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 218 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 277 Query: 455 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatn 514 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 278 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 337 Query: 515 ttgggtatctggggaggcaagggtcaaggaaaatc 549 |||||||||||||||||||| |||||||| ||||| Sbjct: 338 ttgggtatctggggaggcaaaggtcaagggaaatc 372
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 182 bits (92), Expect = 8e-43 Identities = 229/275 (83%) Strand = Plus / Plus Query: 275 gaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggcgcccacg 334 |||||||||||||||||||| ||||||||||| || ||||| || |||||||| |||| | Sbjct: 128 gaccagcaggacatcaccagggggaagggcatggtcgactccctgttccaggctcccatg 187 Query: 335 ggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctgcgg 394 |||||||| |||||| | ||||||| ||||||||||||||| ||||| || || || Sbjct: 188 ggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctccgc 247 Query: 395 aagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaag 454 || | |||| ||||||||| || || || ||||||||||| || |||||||||||| Sbjct: 248 tcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggacaag 307 Query: 455 cttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatn 514 ||||| || || || |||| |||||||||| | |||||||||||||||| || ||||| Sbjct: 308 cttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctcatt 367 Query: 515 ttgggtatctggggaggcaagggtcaaggaaaatc 549 |||||||||||||||||||| ||||| || ||||| Sbjct: 368 ttgggtatctggggaggcaaaggtcaggggaaatc 402
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 161 bits (81), Expect = 3e-36 Identities = 252/311 (81%) Strand = Plus / Plus Query: 239 gacaagtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagaggg 298 |||| ||||||||| || || ||||| ||||| ||||||||||||||||||||||| || Sbjct: 213 gacaggtggaagggcctggcctacgacatctcggacgaccagcaggacatcaccaggggc 272 Query: 299 aagggcatcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtc 358 |||||| |||| ||| |||||||||||||| | |||||||||||| ||||| Sbjct: 273 aagggcctcgtcgacaacctcttccaggcgcctatnnnnnacggcacccacgtcgccgtg 332 Query: 359 ctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatg 418 |||||||||||||| ||| |||||||||||| | ||| |||||||||||| ||| Sbjct: 333 ctcagctcctacgactacatcagccagggccaaaagtcttacaacttcgacaacatgatg 392 Query: 419 ggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaac 478 | ||||||||||| || | |||||||||||||| || ||||| |||||||| ||| Sbjct: 393 gatggcttctacatagccaagggcttcatggacaagctcgtcgtccacctctccaagaac 452 Query: 479 ttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggt 538 |||||||||||||| ||||||||| | || ||||| |||||||| ||||||||| || Sbjct: 453 ttcatgaccctgccaaacatcaaggttcccctcatcctgggtatcgtgggaggcaaaggc 512 Query: 539 caaggaaaatc 549 || |||||||| Sbjct: 513 cagggaaaatc 523 Score = 91.7 bits (46), Expect = 2e-15 Identities = 107/127 (84%), Gaps = 9/127 (7%) Strand = Plus / Plus Query: 65 atggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaa------c 118 ||||| || |||||||||||||||||||| |||||||| || || ||||||| | Sbjct: 21 atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80 Query: 119 ttcctcgggaagaagctcaagaagc---aggtgacctcggccgtgaactaccatggcaag 175 |||||||||||||||||||| |||| ||||| || ||||||||| ||||||||||||| Sbjct: 81 ttcctcgggaagaagctcaacaagccgcaggtgtccgcggccgtgacctaccatggcaag 140 Query: 176 agctcca 182 ||||||| Sbjct: 141 agctcca 147
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 153 bits (77), Expect = 7e-34 Identities = 260/322 (80%) Strand = Plus / Plus Query: 245 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaagggc 304 |||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| || Sbjct: 280 tggaagggtcttgcttatgatatctccgatgaccaacaagacattaccagagggaaaggt 339 Query: 305 atcgtggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 364 || || ||||| | ||||| || |||| | ||| || || ||| | || ||| | ||| Sbjct: 340 atggtcgactcattgttccaagctcccatgaacgatggtactcactatgctgtcatgagc 399 Query: 365 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 424 ||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| || Sbjct: 400 tcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggatgga 459 Query: 425 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 484 |||||||| || || ||||||||||||||||||||||| || || |||| |||| |||| Sbjct: 460 ttctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactacatg 519 Query: 485 accctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagga 544 ||||| || ||||| ||| | || || || |||||||| ||||||||||| ||||||||| Sbjct: 520 acccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaagga 579 Query: 545 aaatcattncagngtgagcttg 566 ||||| || || ||||||||| Sbjct: 580 aaatctttccaatgtgagcttg 601
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 153 bits (77), Expect = 7e-34 Identities = 170/202 (84%) Strand = Plus / Plus Query: 365 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 424 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 425 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 484 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 485 accctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagga 544 | |||||||||||||| | ||||| || |||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 545 aaatcattncagngtgagcttg 566 |||||||| ||| |||| |||| Sbjct: 576 aaatcattccagtgtgaacttg 597
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttg 706
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttg 706
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttg 735
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttg 617
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttg 532
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttg 620
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttg 609
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttg 617
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttg 620
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 147 bits (74), Expect = 5e-32 Identities = 176/211 (83%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttg 735
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 137 bits (69), Expect = 4e-29 Identities = 123/142 (86%) Strand = Plus / Plus Query: 425 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 484 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 485 accctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagga 544 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 545 aaatcattncagngtgagcttg 566 ||||| || ||| ||||||||| Sbjct: 546 aaatctttccagtgtgagcttg 567
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 129 bits (65), Expect = 1e-26 Identities = 122/142 (85%) Strand = Plus / Plus Query: 425 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 484 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 485 accctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagga 544 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 545 aaatcattncagngtgagcttg 566 ||||| || ||| ||||||||| Sbjct: 596 aaatctttccagtgtgagcttg 617
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 127 bits (64), Expect = 4e-26 Identities = 124/145 (85%) Strand = Plus / Plus Query: 422 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 481 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 482 atgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaa 541 |||| |||||||||||||| | |||||||| |||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 542 ggaaaatcattncagngtgagcttg 566 || |||||||| || ||||||||| Sbjct: 554 ggtaaatcattccaatgtgagcttg 578
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 121 bits (61), Expect = 3e-24 Identities = 121/142 (85%) Strand = Plus / Plus Query: 425 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 484 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 485 accctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagga 544 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 545 aaatcattncagngtgagcttg 566 |||||||| || ||||||||| Sbjct: 593 aaatcattccaatgtgagcttg 614
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 121 bits (61), Expect = 3e-24 Identities = 121/142 (85%) Strand = Plus / Plus Query: 425 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 484 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 485 accctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagga 544 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 545 aaatcattncagngtgagcttg 566 || || || || ||||||||| Sbjct: 589 aagtctttccaatgtgagcttg 610 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 245 tggaagggtcttgcgtacgatatctccgacgaccagcaggacatcaccagagggaaggg 303 ||||||||||| || ||||||||||| || ||||| || |||||||| || |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaaggg 353
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 119 bits (60), Expect = 1e-23 Identities = 120/141 (85%) Strand = Plus / Plus Query: 426 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 485 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 486 ccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaa 545 | |||||||||||||||| |||||||| |||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 546 aatcattncagngtgagcttg 566 |||| || || ||||||||| Sbjct: 750 aatccttccaatgtgagcttg 770
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 117 bits (59), Expect = 4e-23 Identities = 134/160 (83%) Strand = Plus / Plus Query: 407 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 466 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 467 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctgg 526 || |||| ||||||||| |||| || ||||| ||| | || || || |||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 527 ggaggcaagggtcaaggaaaatcattncagngtgagcttg 566 |||||||| |||||||||||||| || || ||||||||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttg 415
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 117 bits (59), Expect = 4e-23 Identities = 119/140 (85%) Strand = Plus / Plus Query: 427 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 486 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 487 cctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaa 546 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 547 atcattncagngtgagcttg 566 || || || ||||||||| Sbjct: 276 gtccttccaatgtgagcttg 295
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 117 bits (59), Expect = 4e-23 Identities = 106/122 (86%) Strand = Plus / Plus Query: 428 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 487 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 488 ctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaa 547 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 548 tc 549 || Sbjct: 207 tc 208
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 117 bits (59), Expect = 4e-23 Identities = 175/212 (82%), Gaps = 2/212 (0%) Strand = Plus / Plus Query: 356 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 415 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 416 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 475 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttggg-tatctggggaggcaa 534 |||||| |||| ||||| ||||||||| | ||||| || ||||| | || |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggctctc-ggggaggcaa 569 Query: 535 gggtcaaggaaaatcattncagngtgagcttg 566 |||||||| ||||| || ||| ||||||||| Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttg 601
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 115 bits (58), Expect = 2e-22 Identities = 142/171 (83%) Strand = Plus / Plus Query: 396 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 455 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 456 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnt 515 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 516 tgggtatctggggaggcaagggtcaaggaaaatcattncagngtgagcttg 566 | ||| |||||||||||||||| ||||||||||| || || ||||||||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttg 606
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 111 bits (56), Expect = 3e-21 Identities = 94/107 (87%) Strand = Plus / Plus Query: 443 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 502 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 503 atcccactcatnttgggtatctggggaggcaagggtcaaggaaaatc 549 | || ||||| ||||||||||||||||||| || || |||||||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatc 128
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 109 bits (55), Expect = 1e-20 Identities = 129/154 (83%) Strand = Plus / Plus Query: 396 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 455 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 456 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnt 515 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || || | Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 516 tgggtatctggggaggcaagggtcaaggaaaatc 549 ||||||||||||||||||| |||||||||||||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatc 584
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 109 bits (55), Expect = 1e-20 Identities = 129/154 (83%) Strand = Plus / Plus Query: 396 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 455 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 456 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnt 515 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || || | Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 516 tgggtatctggggaggcaagggtcaaggaaaatc 549 ||||||||||||||||||| |||||||||||||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatc 584
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 109 bits (55), Expect = 1e-20 Identities = 133/160 (83%) Strand = Plus / Plus Query: 407 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 466 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 467 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctgg 526 || ||| ||||||||| |||| || ||||| ||| | || || || ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 527 ggaggcaagggtcaaggaaaatcattncagngtgagcttg 566 |||||||| |||||||||||||| || || ||||||||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttg 416
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 87.7 bits (44), Expect = 4e-14 Identities = 91/107 (85%) Strand = Plus / Plus Query: 434 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 493 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 494 aacatcaagatcccactcatnttgggtatctggggaggcaagggtca 540 ||||| ||| | || ||||| |||||||| ||||||||||| ||||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtca 591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 268 ctccgacgaccagcaggacatcaccagagggaagggcatcgtggactcgctcttccaggc 327 |||||||||||| || |||||||| ||||| ||||| | |||||||| ||||||||||| Sbjct: 319 ctccgacgaccaacaagacatcacaagaggaaagggtaaggtggactccctcttccaggc 378
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 83.8 bits (42), Expect = 6e-13 Identities = 117/143 (81%) Strand = Plus / Plus Query: 424 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 483 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 484 gaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaagg 543 || | |||| ||||||||| | || || || |||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 544 aaaatcattncagngtgagcttg 566 ||||| || || ||||||||| Sbjct: 634 taaatccttccaatgtgagcttg 656
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 428 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 487 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 488 ctgcccaacatcaag 502 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/61 (86%) Strand = Plus / Minus Query: 506 ccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattncagngtgagctt 565 ||||| || |||||||| ||||||||||| |||||||| ||||| || ||| |||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 566 g 566 | Sbjct: 14673 g 14673
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 428 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 487 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 488 ctgcccaacatcaag 502 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/61 (86%) Strand = Plus / Plus Query: 506 ccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattncagngtgagctt 565 ||||| || |||||||| ||||||||||| |||||||| ||||| || ||| |||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 566 g 566 | Sbjct: 2610 g 2610
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 425 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 484 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 485 ac 486 || Sbjct: 66 ac 67 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/58 (87%) Strand = Plus / Plus Query: 509 ctcatnttgggtatctggggaggcaagggtcaaggaaaatcattncagngtgagcttg 566 ||||| ||||||||||||||||| || |||||||| ||||| || ||| ||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttg 243
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 65.9 bits (33), Expect = 1e-07 Identities = 57/66 (86%) Strand = Plus / Plus Query: 501 agatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattncagngtg 560 |||| |||||||| |||||| | |||||||||||||||||||| ||||| || || ||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 561 agcttg 566 |||||| Sbjct: 2298 agcttg 2303 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 424 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 483 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 484 gaccctgcccaacatcaag 502 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/67 (85%) Strand = Plus / Minus Query: 500 aagatcccactcatnttgggtatctggggaggcaagggtcaaggaaaatcattncagngt 559 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || || Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 560 gagcttg 566 ||||||| Sbjct: 7481 gagcttg 7475
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 60.0 bits (30), Expect = 8e-06 Identities = 101/125 (80%) Strand = Plus / Plus Query: 422 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 481 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 482 atgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaagggtcaa 541 ||| ||||||||| |||||| | || ||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 542 ggaaa 546 ||||| Sbjct: 1248 ggaaa 1252
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 407 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 462 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 518 ggtatctggggaggcaagggtcaaggaaaatc 549 |||||||||||||| || |||||||||||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatc 83927
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 56.0 bits (28), Expect = 1e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 471 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggag 530 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 531 gcaaggg 537 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 48.1 bits (24), Expect = 0.032 Identities = 44/51 (86%) Strand = Plus / Plus Query: 487 cctgcccaacatcaagatcccactcatnttgggtatctggggaggcaaggg 537 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Minus Query: 518 ggtatctggggaggcaagggtcaaggaaaatc 549 |||||||||||||| || |||||||||||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatc 104902
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 270 ccgacgaccagcaggacatcacc 292 ||||||||||||||||||||||| Sbjct: 1452088 ccgacgaccagcaggacatcacc 1452066
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 312 actcgctcttccaggcgcccac 333 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 44.1 bits (22), Expect = 0.49 Identities = 73/91 (80%) Strand = Plus / Plus Query: 476 aacttcatgaccctgcccaacatcaagatcccactcatnttgggtatctggggaggcaag 535 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 536 ggtcaaggaaaatcattncagngtgagcttg 566 ||||||||||| || || ||| |||| |||| Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttg 612
>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome Length = 1173390 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 gaagaagctcaagaagcaggtg 148 |||||||||||||||||||||| Sbjct: 632957 gaagaagctcaagaagcaggtg 632978
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA Length = 929 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cagcacagagatggctgctgc 75 ||||||||||||||||||||| Sbjct: 531 cagcacagagatggctgctgc 511
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA Length = 939 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cagcacagagatggctgctgc 75 ||||||||||||||||||||| Sbjct: 541 cagcacagagatggctgctgc 521
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA Length = 992 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cagcacagagatggctgctgc 75 ||||||||||||||||||||| Sbjct: 595 cagcacagagatggctgctgc 575
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA Length = 1318 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cagcacagagatggctgctgc 75 ||||||||||||||||||||| Sbjct: 932 cagcacagagatggctgctgc 912
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA Length = 1006 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 cagcacagagatggctgctgc 75 ||||||||||||||||||||| Sbjct: 609 cagcacagagatggctgctgc 589
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 catggcagcggagaacatcg 221 |||||||||||||||||||| Sbjct: 1379894 catggcagcggagaacatcg 1379875
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds Length = 2103 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AE010322.1| Methanopyrus kandleri AV19 section 21 of 157 of the complete genome Length = 10732 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 266 atctccgacgaccagcaggacatc 289 |||||| ||||||||||||||||| Sbjct: 8676 atctcccacgaccagcaggacatc 8653
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 gcagcggagaacatcgacga 225 |||||||||||||||||||| Sbjct: 173412 gcagcggagaacatcgacga 173393
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 cccacgggcgacggcacccacgag 352 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>ref|NM_001003053.1| Canis familiaris androgen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease) (AR), mRNA Length = 3577 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gcaagagctccaaggccaac 190 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctgccttctcctccaccgtc 91 |||||||||||||||||||| Sbjct: 240861 ctgccttctcctccaccgtc 240842
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 ccctgcccaacatcaagatc 505 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 catggcagcggagaacatcg 221 |||||||||||||||||||| Sbjct: 1380755 catggcagcggagaacatcg 1380736
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 cccacgggcgacggcacccacgag 352 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:1494 IMAGE:3533568), complete cds Length = 2464 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 722 tggctgctgccttctcctcc 703
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding protein 4 (LOC506402), mRNA Length = 7219 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctgctgccttctcctccacc 88 |||||||||||||||||||| Sbjct: 5008 ctgctgccttctcctccacc 4989
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence Length = 457 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctgctgccttctcctccacc 88 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence Length = 470 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ctgctgccttctcctccacc 88 |||||||||||||||||||| Sbjct: 65 ctgctgccttctcctccacc 46
>ref|XM_381225.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01049.1) partial mRNA Length = 22443 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 gaagaagctcaagaagcagg 146 |||||||||||||||||||| Sbjct: 8385 gaagaagctcaagaagcagg 8404
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA clone MGC:5049 IMAGE:2900024), complete cds Length = 3237 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 232 tggctgctgccttctcctcc 213
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 ggcttctacatcgctcctgctttc 445 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 cccacgggcgacggcacccacgag 352 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the gene for Hermansky-Pudlak syndrome-6 protein (HPS6), two pseudogenes for transcription elongation factor B (SIII), polypeptide 1, the LDB1 gene for LIM domain binding 1, a novel gene (KIAA0595), the NOLC1 gene for nucleolar and coiled-body phosphoprotein 1 and five CpG islands, complete sequence Length = 158434 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 101054 tggctgctgccttctcctcc 101035
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body phosphoprotein 1 mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>gb|AC104422.4| Homo sapiens chromosome 18, clone RP11-260B14, complete sequence Length = 147210 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ccagagggaagggcatcgtg 310 |||||||||||||||||||| Sbjct: 35948 ccagagggaagggcatcgtg 35967
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1812 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 717 tggctgctgccttctcctcc 698
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar to H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2288 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 570 tggctgctgccttctcctcc 551
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 gtccatctctccaaaaactt 480 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence Length = 177104 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 acagagatggctgctgcctt 78 |||||||||||||||||||| Sbjct: 121162 acagagatggctgctgcctt 121143
>gb|AF197950.1| Canis familiaris androgen receptor (AR) mRNA, complete cds Length = 3577 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gcaagagctccaaggccaac 190 |||||||||||||||||||| Sbjct: 3271 gcaagagctccaaggccaac 3290
>gb|AC100806.2| Homo sapiens chromosome 18, clone CTB-2341H11, complete sequence Length = 81641 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ccagagggaagggcatcgtg 310 |||||||||||||||||||| Sbjct: 47211 ccagagggaagggcatcgtg 47230
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence Length = 180261 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Plus Query: 42 aaggtcgaccaagcagcacagagatggctgctgccttctc 81 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 ccctgcccaacatcaagatc 505 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 cccacgggcgacggcacccacgag 352 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC019012.4|AC019012 Genomic Sequence For Arabidopsis thaliana Clone T3J11 From Chromosome V, complete sequence Length = 130299 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 181 caaggccaacaggttcacagtcat 204 ||||||||||||||||| |||||| Sbjct: 13824 caaggccaacaggttcagagtcat 13847
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 cgatatctccgacgaccagc 281 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 ccctgcccaacatcaagatc 505 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds Length = 2103 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 715 tggctgctgccttctcctcc 696
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 422 ggcttctacatcgctcctgctttc 445 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>gb|AC018660.1|AC018660 Genomic Sequence For Arabidopsis thaliana Clone F11P10, Chromosome V, complete sequence Length = 105589 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 181 caaggccaacaggttcacagtcat 204 ||||||||||||||||| |||||| Sbjct: 27506 caaggccaacaggttcagagtcat 27483
>gb|AC134613.5| Mus musculus BAC clone RP23-133J23 from 8, complete sequence Length = 187148 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aagaagctcaagaagcaggt 147 |||||||||||||||||||| Sbjct: 44669 aagaagctcaagaagcaggt 44650
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209755 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 46900 tggctgctgccttctcctcc 46919
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds Length = 3727 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 708 tggctgctgccttctcctcc 689
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete sequences Length = 162128 Score = 40.1 bits (20), Expect = 7.7 Identities = 35/40 (87%) Strand = Plus / Minus Query: 42 aaggtcgaccaagcagcacagagatggctgctgccttctc 81 |||||| ||||| ||||||| || ||||||||||||||| Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 486 ccctgcccaacatcaagatc 505 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 62 gagatggctgctgccttctcctcc 85 ||||||||||||||||||| |||| Sbjct: 472845 gagatggctgctgccttctgctcc 472822
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 486 ccctgcccaacatcaagatc 505 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 cccacgggcgacggcacccacgag 352 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130 Length = 2502 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 tggctgctgccttctcctcc 85 |||||||||||||||||||| Sbjct: 766 tggctgctgccttctcctcc 747 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,454,208 Number of Sequences: 3902068 Number of extensions: 4454208 Number of successful extensions: 82271 Number of sequences better than 10.0: 120 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81721 Number of HSP's gapped (non-prelim): 540 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
