Clone Name	baal39d10
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	1172	0.0
2	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	1061	0.0
3	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	1023	0.0
4	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	926	0.0
5	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	809	0.0
6	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	690	0.0
7	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	656	0.0
8	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	521	e-145
9	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	313	4e-82
10	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	305	9e-80
11	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	305	9e-80
12	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	305	9e-80
13	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	305	9e-80
14	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	305	9e-80
15	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	305	9e-80
16	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	305	9e-80
17	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	305	9e-80
18	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	305	9e-80
19	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	291	1e-75
20	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	289	5e-75
21	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	264	3e-67
22	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	264	3e-67
23	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	264	3e-67
24	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	264	3e-67
25	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	242	1e-60
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	242	1e-60
27	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	234	3e-58
28	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	234	3e-58
29	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	226	7e-56
30	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	218	2e-53
31	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	196	6e-47
32	ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	194	2e-46
33	ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	194	2e-46
34	ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2...	194	2e-46
35	gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890)...	194	2e-46
36	gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730...	194	2e-46
37	gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map ...	194	2e-46
38	gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, comp...	194	2e-46
39	gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	194	2e-46
40	gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730...	194	2e-46
41	gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete se...	194	2e-46
42	gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphospha...	194	2e-46
43	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	192	9e-46
44	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	190	4e-45
45	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	190	4e-45
46	gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, compl...	186	6e-44
47	gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 gen...	184	2e-43
48	gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 gen...	184	2e-43
49	gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 gen...	184	2e-43
50	gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 gen...	184	2e-43
51	gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 gen...	184	2e-43
52	gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 gen...	184	2e-43
53	gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 gen...	184	2e-43
54	gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 gen...	184	2e-43
55	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	180	4e-42
56	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	178	1e-41
57	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	178	1e-41
58	gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 gen...	176	6e-41
59	gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 gen...	176	6e-41
60	gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 gen...	176	6e-41
61	gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 gen...	176	6e-41
62	gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 gen...	176	6e-41
63	gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genom...	176	6e-41
64	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	174	2e-40
65	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	172	9e-40
66	gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1...	163	8e-37
67	gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/...	159	1e-35
68	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	159	1e-35
69	gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA...	151	3e-33
70	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	149	1e-32
71	gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bi...	143	8e-31
72	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	139	1e-29
73	gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate...	139	1e-29
74	gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precur...	137	5e-29
75	gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precur...	137	5e-29
76	gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence	133	8e-28
77	emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphat...	121	3e-24
78	emb|Y10657.1|CLRCAGENE C.littorale rca gene	113	7e-22
79	emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphospha...	105	2e-19
80	emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase	105	2e-19
81	gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase m...	98	4e-17
82	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	90	1e-14
83	gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precurso...	90	1e-14
84	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	86	2e-13
85	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
86	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	78	4e-11
87	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	76	2e-10
88	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	9e-06
89	emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubis...	58	4e-05
90	ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G7...	56	1e-04
91	gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete s...	56	1e-04
92	gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, com...	56	1e-04
93	gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, com...	56	1e-04
94	emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Co...	56	1e-04
95	dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown ...	56	1e-04
96	gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N...	56	1e-04
97	emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Co...	54	6e-04
98	gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome	50	0.009
99	gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete se...	48	0.035
100	gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete se...	48	0.035
101	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.54
102	emb|AL137022.8| Human DNA sequence from clone RP11-344A7 on chro...	42	2.1
103	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	2.1
104	emb|CR937045.1|PT025P03 Pan troglodytes chromosome 11 BAC PTB-02...	42	2.1
105	ref|NM_076469.4| Caenorhabditis elegans Amyloid Precursor-Like f...	42	2.1
106	ref|NM_076470.2| Caenorhabditis elegans Amyloid Precursor-Like f...	42	2.1
107	gb|U56966.2| Caenorhabditis elegans cosmid C42D8, complete sequence	42	2.1
108	emb|BX818441.1|CNS0ACQX Arabidopsis thaliana Full-length cDNA Co...	42	2.1
109	gb|U00240.1|U00240 Caenorhabditis elegans beta-amyloid protein p...	42	2.1
110	gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complet...	40	8.4
111	gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten...	40	8.4
112	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	8.4
113	gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx...	40	8.4
114	gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ...	40	8.4
115	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	8.4
116	emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding prot...	40	8.4
117	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	8.4
118	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	8.4
119	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	8.4
120	gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten...	40	8.4
121	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	8.4
122	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	8.4
123	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	8.4
124	gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome	40	8.4
125	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	8.4
126	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	8.4
127	ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot...	40	8.4
128	gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ...	40	8.4
129	gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, c...	40	8.4
130	gb|AC006529.1|AC006529 Homo sapiens clone SCb-20L24 from 7q31, c...	40	8.4
131	gb|AY845069.1| Olea europaea clone SRAP-12 SRAP marker genomic s...	40	8.4
132	gb|AC154579.3| Mus musculus BAC clone RP23-376B1 from chromosome...	40	8.4

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score = 1172 bits (591), Expect = 0.0
 Identities = 613/619 (99%), Gaps = 1/619 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 872  tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaagaggg 931

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 991

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 1051

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 1052 gtgtctgcaagggtatcttccagaccgacaatgtctgtgacgagtctgtcgtaaagatcg 1111

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 1171

                                                                        
Query: 302  acgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctgg 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1172 acgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctgg 1231

                                                                        
Query: 362  tgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1232 tgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 1291

                                                                        
Query: 422  tagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctg 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 tagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctg 1351

                                                                        
Query: 482  acacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggtt 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 acacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggtt 1411

                                                                        
Query: 542  ccttctacggttagaaaattctccatac-acacccaccatcttttgctgcataggaggag 600
            |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 1412 ccttctacggttagaaaattctccatacaacacccaccatctcttgctgcataggaggag 1471

                               
Query: 601  gtaaaggagcacagcaagg 619
            |||||||||||||||||||
Sbjct: 1472 gtaaaggagcacagcaagg 1490

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 1061 bits (535), Expect = 0.0
 Identities = 547/551 (99%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 617  tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaagaggg 676

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 736

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 796

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 797  gtgtctgcaagggtatcttccagaccgacaatgtctgtgacgagtctgtcgtaaagatcg 856

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 916

                                                                        
Query: 302  acgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctgg 361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917  acgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctgg 976

                                                                        
Query: 362  tgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 421
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977  tgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 1036

                                                                        
Query: 422  tagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctg 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 tagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctg 1096

                                                                        
Query: 482  acacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggtt 541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 acacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggtt 1156

                       
Query: 542  ccttctacggt 552
            |||||||||||
Sbjct: 1157 ccttctacggt 1167



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 600  ggtaaaggagcacagcaagg 619
            ||||||||||||||||||||
Sbjct: 1165 ggtaaaggagcacagcaagg 1184

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score = 1023 bits (516), Expect = 0.0
 Identities = 591/616 (95%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 794  atgaacatcgccgatgcccccaccaatgtgcagctcccaggcatgtacaacaaggaggag 853

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||||| |||||||||||||||||||| |||||||||||||||||| | ||||| ||||||
Sbjct: 854  aacccacgtgtgcccatcgtcgtcactggtaacgatttctcgacgttgtacgcccctctg 913

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 914  atccgtgatggtcgtatggagaagttctactgggctcccacccgcgacgaccgtatcggt 973

                                                                        
Query: 184  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 243
            ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 974  gtctgcaagggtatcttccagaccgacaatgtcagcgacgagtccgtcgtcaagatcgtc 1033

                                                                        
Query: 244  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gacaccttcccaggacaatccatcgactttttcggtgctctgcgtgctcgggtgtacgac 1093

                                                                        
Query: 304  gatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctggtg 363
            || |||||||||||||||||   ||||||||| ||||||||||||||||||| |||||||
Sbjct: 1094 gacgaggtgcgcaagtgggtgacctctaccggtatcgagaacattggcaagaagctggtg 1153

                                                                        
Query: 364  aactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgcta 423
            |||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 1154 aactcgcgggacggaccagtgacctttgagcagccaaagatgacagtggagaagctgcta 1213

                                                                        
Query: 424  gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 gagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgac 1273

                                                                        
Query: 484  acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggttcc 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1274 acctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggtacc 1333

                                                                        
Query: 544  ttctacggttagaaaattctccatacacacccaccatcttttgctgcataggaggaggta 603
            |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1334 ttctacggttagaacattctccatacacacccaccatctcttgctgcataggaggaggta 1393

                            
Query: 604  aaggagcacagcaagg 619
            |||| |||||||||||
Sbjct: 1394 aaggggcacagcaagg 1409

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  926 bits (467), Expect = 0.0
 Identities = 536/559 (95%)
 Strand = Plus / Plus

                                                                       
Query: 61  gagaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcct 120
           |||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| |||
Sbjct: 1   gagaacccacgtgtgcccatcgtcgtcactggtaacgatttctcgacgttgtacgcccct 60

                                                                       
Query: 121 ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 61  ctgatccgtgatggtcgtatggagaagttctactgggctcccacccgcgacgaccgtatc 120

                                                                       
Query: 181 ggtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatc 240
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 121 ggtgtctgcaagggtatcttccagaccgacaatgtcagcgacgagtccgtcgtcaagatc 180

                                                                       
Query: 241 gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 181 gtcgacaccttcccaggacaatccatcgactttttcggtgctctgcgtgctcgggtgtac 240

                                                                       
Query: 301 gacgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctg 360
           ||||| |||||||||||||||||   ||||||||| ||||||||||||||||||| ||||
Sbjct: 241 gacgacgaggtgcgcaagtgggtgacctctaccggtatcgagaacattggcaagaagctg 300

                                                                       
Query: 361 gtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctg 420
           ||||||||||||||||| || |||||||| |||||||||||||||||||| |||||||||
Sbjct: 301 gtgaactcgcgggacggaccagtgacctttgagcagccaaagatgacagtggagaagctg 360

                                                                       
Query: 421 ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgct 420

                                                                       
Query: 481 gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggt 480

                                                                       
Query: 541 tccttctacggttagaaaattctccatacacacccaccatcttttgctgcataggaggag 600
            |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 481 accttctacggttagaacattctccatacacacccaccatctcttgctgcataggaggag 540

                              
Query: 601 gtaaaggagcacagcaagg 619
           ||||||| |||||||||||
Sbjct: 541 gtaaaggggcacagcaagg 559

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  809 bits (408), Expect = 0.0
 Identities = 566/618 (91%), Gaps = 2/618 (0%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            |||||||||||||||| || |||||||||||||||||||| || ||||||||||||||||
Sbjct: 803  tgatgaacatcgccgacgcgcccaccaacgtgcagctcccggggatgtacaacaaggagg 862

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            ||||||||||||| |||||| |||||||||| ||||| ||||||||||| ||||| || |
Sbjct: 863  agaacccccgtgtccccatcatcgtcaccggcaacgacttctcgacgctgtacgcgcccc 922

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct: 923  tcatccgtgacggtcgtatggagaagttctactgggcgcccacccgcgaggaccgtatcg 982

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 983  gcgtctgcaagggtatcttccagaccgacaacgtcagcgacgagtctgtcgtcaagatcg 1042

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            ||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1043 tcgacacnttcccaggacagtccatcgacttcttcggtgctctgcgtgctcgggtgtacg 1102

                                                                        
Query: 302  acgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctgg 361
            ||| ||||||||||||||||||    || |||||||| |||||||| |||||||||||||
Sbjct: 1103 acgttgaggtgcgcaagtgggtgtcgtccaccggaattgagaacatcggcaagaggctgg 1162

                                                                        
Query: 362  tgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 421
            |||||||||||||||| ||||| |||||||||||||| |||||||| || |||||| |||
Sbjct: 1163 tgaactcgcgggacggacccgtcaccttcgagcagcccaagatgacggtggagaagttgc 1222

                                                                        
Query: 422  tagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctg 481
            | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1223 tggagtacggccacatgcttgtccaggagcaggacaatgtcaagcgtgtgcagcttgcgg 1282

                                                                        
Query: 482  acacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggtt 541
            |||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct: 1283 acacttacatgagccaggcagctctgggtgatgcgaacaaggatgccatgaagactggtt 1342

                                                                        
Query: 542  ccttctacggttagaaaattctccatacacacccaccatcttttgctgcataggaggagg 601
            |||||||||||||||| | ||| |||  ||||||||||||| ||||||||||||||||||
Sbjct: 1343 ccttctacggttagaacactcttcat--acacccaccatctcttgctgcataggaggagg 1400

                              
Query: 602  taaaggagcacagcaagg 619
            |||||||||||| |||||
Sbjct: 1401 taaaggagcacaacaagg 1418

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  690 bits (348), Expect = 0.0
 Identities = 500/551 (90%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            |||||||||||||||| || ||||||||||||||||| || || ||||||||||||||||
Sbjct: 813  tgatgaacatcgccgacgcgcccaccaacgtgcagcttccggggatgtacaacaaggagg 872

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            ||||||||||||| |||||  | |||||||| ||||| || |||||||| ||||| || |
Sbjct: 873  agaacccccgtgttcccattatngtcaccggcaacgacttttcgacgctgtacgcccccc 932

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | || | ||| ||||||||||||||||| |||||||| |||||||| || ||||||||||
Sbjct: 933  ttattcctgacggtcgtatggagaagttttactgggcgcccacccgcgaggaccgtatcg 992

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 993  gcgtctgcaagggtatcttccagaccgacaacgtcagcgacgagtctgtcgtcaagatcg 1052

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 1053 tcgacaccttcccaggacagtccatcgacttcttcggtgctctgcgtgctcgggtgtacg 1112

                                                                        
Query: 302  acgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctgg 361
            |||| |||||||||||||||||    || |||||||| |||||||| |||||||||||||
Sbjct: 1113 acgacgaggtgcgcaagtgggtgtcgtccaccggaattgagaacatcggcaagaggctgg 1172

                                                                        
Query: 362  tgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 421
            |||||||||||||||| ||||| |||||||||||||| |||||||| || |||||| |||
Sbjct: 1173 tgaactcgcgggacggacccgtcaccttcgagcagcccaagatgacggtggagaagttgc 1232

                                                                        
Query: 422  tagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctg 481
            | |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 1233 tggagtacggccacatgcttgtccaggagcaggacaatgtcaagcgtgtgcagcttgcgg 1292

                                                                        
Query: 482  acacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatgaagactggtt 541
            |||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||
Sbjct: 1293 acacttacatgagccaggcagctctgggtgatgcgaacaaggatgccatgaagactggtt 1352

                       
Query: 542  ccttctacggt 552
            |||||||||||
Sbjct: 1353 ccttctacggt 1363

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  656 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Plus

                                                                        
Query: 268  gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7021 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 7080

                                                                        
Query: 328  tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7081 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 7140

                                                                        
Query: 388  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7141 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 7200

                                                                        
Query: 448  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7201 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 7260

                                                                        
Query: 508  ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7261 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 7320

                                               
Query: 568  acacacccaccatcttttgctgcataggaggaggt 602
            ||||||||||||||| |||||||||||||||||||
Sbjct: 7321 acacacccaccatctcttgctgcataggaggaggt 7355



 Score =  513 bits (259), Expect = e-142
 Identities = 265/267 (99%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 6614 tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaagaggg 6673

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6674 agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 6733

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6734 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 6793

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6794 gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 6853

                                       
Query: 242  tcgacaccttcccaggacaatccattg 268
            |||||||||||||||||||||||||||
Sbjct: 6854 tcgacaccttcccaggacaatccattg 6880



 Score =  289 bits (146), Expect = 5e-75
 Identities = 281/326 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||
Sbjct: 3487 tgatgaacatcgcggacgcgcccaccaacgtgcagctcccggggatgtacaacaaggagg 3546

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            |||||||||| ||||||||| |||||||||| ||||| ||||||||||| |||||||| |
Sbjct: 3547 agaacccccgcgtgcccatcatcgtcaccggcaacgacttctcgacgctgtacgctcccc 3606

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            |||||||||| || || |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 3607 tgatccgtgacgggcgcatggagaagttctactgggcgcccacccgcgaggaccgcatcg 3666

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | || |||||||| |||||||  |||||||| |||   |||||| | || || | | | |
Sbjct: 3667 gcgtgtgcaagggcatcttccgcaccgacaacgtcccggacgaggccgtggtgaggctgg 3726

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            | ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||
Sbjct: 3727 tggacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcacgggtgtacg 3786

                                      
Query: 302  acgatgaggtgcgcaagtgggtcggc 327
            |||| |||||||||||||||||||||
Sbjct: 3787 acgacgaggtgcgcaagtgggtcggc 3812



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 388  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
            ||||| ||||| ||||||||  | ||||||||  | |||||||| |||||||| ||||||
Sbjct: 3873 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 3932

                                         
Query: 448  gagcaggacaatgtcaagcgtgtgcagct 476
            |||||||| || |||||||||||||||||
Sbjct: 3933 gagcaggagaacgtcaagcgtgtgcagct 3961



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 598  gaggtaaaggagcacagcaagg 619
            ||||||||||||||||||||||
Sbjct: 7523 gaggtaaaggagcacagcaagg 7544

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  521 bits (263), Expect = e-145
 Identities = 296/307 (96%)
 Strand = Plus / Plus

                                                                       
Query: 268 gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggtcggc 327
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |
Sbjct: 2   gactttttcggtgctctgcgtgctcgggtgtacgacgacgaggtgcgcaagtgggtgacc 61

                                                                       
Query: 328 tctaccggaatcgagaacattggcaagaggctggtgaactcgcgggacgggcccgtgacc 387
           |||||||| ||||||||||||||||||| ||| ||||||||||||||||| || ||||||
Sbjct: 62  tctaccggtatcgagaacattggcaagaagcttgtgaactcgcgggacggaccagtgacc 121

                                                                       
Query: 388 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tttgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 181

                                                                       
Query: 448 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 241

                                                                       
Query: 508 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaaaattctccat 567
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 242 ggtgatgctaaccaggatgcgatgaagactggttccttctacggttagaacattctccat 301

                  
Query: 568 acacacc 574
           |||||||
Sbjct: 302 acacacc 308

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  313 bits (158), Expect = 4e-82
 Identities = 281/322 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 796  tgatgaacatcgccgacaacccaaccaacgtgcagctccctgggatgtacaacaaggagg 855

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 856  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 915

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 916  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 975

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 976  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 1035

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 1036 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1095

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1096 acgacgaggtgcgcaagtgggt 1117



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1134 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1193

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1194 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1253

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1254 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1313

                                              
Query: 520  caggatgcgatgaagactggttccttctacggtt 553
               || || |||||||||||||||||||||||||
Sbjct: 1314 tccgacgccatgaagactggttccttctacggtt 1347

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 765  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 824

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 825  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 884

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 885  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 944

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 945  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 1004

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 1005 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1064

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1065 acgacgaggtgcgcaagtgggt 1086



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1103 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1162

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1163 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 1222

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1223 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1282

                                              
Query: 520  caggatgcgatgaagactggttccttctacggtt 553
               || || |||||||||||||||||||||||||
Sbjct: 1283 tccgacgccatgaagactggttccttctacggtt 1316

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 760  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 819

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 820  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 879

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 880  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 939

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 940  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 999

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 1000 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1059

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1060 acgacgaggtgcgcaagtgggt 1081



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1098 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1157

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1158 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1217

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1218 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1277

                                            
Query: 520  caggatgcgatgaagactggttccttctacgg 551
               || || |||||||||||||||||||||||
Sbjct: 1278 tccgacgccatgaagactggttccttctacgg 1309

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 14  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 73

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 74  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 133

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 134 tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 193

                                                                       
Query: 182 gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
           | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 194 gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 253

                                                                       
Query: 242 tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
           |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 254 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 313

                                 
Query: 302 acgatgaggtgcgcaagtgggt 323
           |||| |||||||||||||||||
Sbjct: 314 acgacgaggtgcgcaagtgggt 335



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                       
Query: 340 gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
           |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 352 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 411

                                                                       
Query: 400 aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
           ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 412 aagatgacgatcgaaaagctcatcgagtacggatacatgcttgtgaaggagcaggagaac 471

                                                                       
Query: 460 gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
           ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 472 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 531

                                             
Query: 520 caggatgcgatgaagactggttccttctacggtt 553
              || || |||||||||||||||||||||||||
Sbjct: 532 tccgacgccatgaagactggttccttctacggtt 565

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 808  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 867

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 868  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 927

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 928  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 987

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 988  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 1047

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 1048 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1107

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1108 acgacgaggtgcgcaagtgggt 1129



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1146 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1205

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1206 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1265

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1266 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1325

                                              
Query: 520  caggatgcgatgaagactggttccttctacggtt 553
               || || |||||||||||||||||||||||||
Sbjct: 1326 tccgacgccatgaagactggttccttctacggtt 1359

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 759  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 818

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 819  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 878

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 879  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 938

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 939  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 998

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 999  tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1058

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1059 acgacgaggtgcgcaagtgggt 1080



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1097 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1156

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1157 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1216

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1217 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1276

                                              
Query: 520  caggatgcgatgaagactggttccttctacggtt 553
               || || |||||||||||||||||||||||||
Sbjct: 1277 tccgacgccatgaagactggttccttctacggtt 1310

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 797  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 856

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 857  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 916

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 917  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 976

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 977  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 1036

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 1037 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1096

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1097 acgacgaggtgcgcaagtgggt 1118



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1135 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1194

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1195 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1254

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1255 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1314

                                              
Query: 520  caggatgcgatgaagactggttccttctacggtt 553
               || || |||||||||||||||||||||||||
Sbjct: 1315 tccgacgccatgaagactggttccttctacggtt 1348

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
           insert sequence
          Length = 1470

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 580 tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 639

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 640 acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 699

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 700 tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 759

                                                                       
Query: 182 gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
           | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 760 gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 819

                                                                       
Query: 242 tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
           |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 820 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 879

                                 
Query: 302 acgatgaggtgcgcaagtgggt 323
           |||| |||||||||||||||||
Sbjct: 880 acgacgaggtgcgcaagtgggt 901



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 918  gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 977

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 978  aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1037

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1038 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1097

                                              
Query: 520  caggatgcgatgaagactggttccttctacggtt 553
               || || |||||||||||||||||||||||||
Sbjct: 1098 tccgacgccatgaagactggttccttctacggtt 1131

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 801  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 860

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 861  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 920

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 921  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 980

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 981  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 1040

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 1041 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1100

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1101 acgacgaggtgcgcaagtgggt 1122



 Score =  123 bits (62), Expect = 7e-25
 Identities = 176/214 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1139 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1198

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1199 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1258

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1259 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1318

                                              
Query: 520  caggatgcgatgaagactggttccttctacggtt 553
               || || |||||||||||||||||||||||||
Sbjct: 1319 tccgacgccatgaagactggttccttctacggtt 1352

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  305 bits (154), Expect = 9e-80
 Identities = 280/322 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 795  tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 854

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 855  acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 914

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 915  tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 974

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 975  gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 1034

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            |||||| ||||||||| |||||||| || || ||||| ||||| ||||| || || ||||
Sbjct: 1035 tcgacagcttcccaggccaatccatcgatttcttcggcgctcttcgtgcccgtgtttacg 1094

                                  
Query: 302  acgatgaggtgcgcaagtgggt 323
            |||| |||||||||||||||||
Sbjct: 1095 acgacgaggtgcgcaagtgggt 1116



 Score =  119 bits (60), Expect = 1e-23
 Identities = 174/212 (82%)
 Strand = Plus / Plus

                                                                        
Query: 340  gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
            |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 1133 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 1192

                                                                        
Query: 400  aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
            ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 1193 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 1252

                                                                        
Query: 460  gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
            ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 1253 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 1312

                                            
Query: 520  caggatgcgatgaagactggttccttctacgg 551
               || || |||||||||||||||||||||||
Sbjct: 1313 tccgacgccatgaagactggttccttctacgg 1344

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  291 bits (147), Expect = 1e-75
 Identities = 393/475 (82%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||| || || ||||||||||||||| |||| || ||||||||||||||||
Sbjct: 768  tgatgaacatcgcggacgcgcccaccaacgtgcagttcccggggatgtacaacaaggagg 827

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            ||||||| || ||||||||| |||||||||| ||||| ||||||||||| ||||| || |
Sbjct: 828  agaacccacgcgtgcccatcatcgtcaccggcaacgacttctcgacgctgtacgcgcccc 887

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | ||||| || || || |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 888  tcatccgggacggccgcatggagaagttctactgggcgcccacccgggaggaccgcatcg 947

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | || |||||||| |||||||  |||||||| |||   |||||| | || || | | | |
Sbjct: 948  gcgtgtgcaagggcatcttccgcaccgacaacgtccccgacgaggccgtggtgaggctgg 1007

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            | ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||
Sbjct: 1008 tggacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcgcgggtgtacg 1067

                                                                        
Query: 302  acgatgaggtgcgcaagtgggtcggctctaccggaatcgagaacattggcaagaggctgg 361
            |||| |||||||||||||||||||||   | |||  ||||||||||   |||| |||| |
Sbjct: 1068 acgacgaggtgcgcaagtgggtcggcgagatcggcgtcgagaacatctccaagcggctcg 1127

                                                                        
Query: 362  tgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtcgagaagctgc 421
            | |||||  |||| |||||   ||| ||||| ||||| ||||||||  ||||||||||  
Sbjct: 1128 tcaactccagggaggggccgccgacgttcgaccagcccaagatgaccatcgagaagctca 1187

                                                                   
Query: 422  tagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcagct 476
            | |||||||| |||||||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1188 tggagtacggccacatgctggtccaggagcaggagaacgtgaagcgcgtgcagct 1242

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score =  289 bits (146), Expect = 5e-75
 Identities = 281/326 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||| || || |||||||||||||||||||| || ||||||||||||||||
Sbjct: 918  tgatgaacatcgcggacgcgcccaccaacgtgcagctcccggggatgtacaacaaggagg 977

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            |||||||||| ||||||||| |||||||||| ||||| ||||||||||| |||||||| |
Sbjct: 978  agaacccccgcgtgcccatcatcgtcaccggcaacgacttctcgacgctgtacgctcccc 1037

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            |||||||||| || || |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 1038 tgatccgtgacgggcgcatggagaagttctactgggcgcccacccgcgaggaccgcatcg 1097

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | || |||||||| |||||||  |||||||| |||   |||||| | || || | | | |
Sbjct: 1098 gcgtgtgcaagggcatcttccgcaccgacaacgtcccggacgaggccgtggtgaggctgg 1157

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            | ||||||||||| || || ||||| ||||| ||||| || ||||| || ||||||||||
Sbjct: 1158 tggacaccttcccggggcagtccatcgacttcttcggcgcgctgcgggcacgggtgtacg 1217

                                      
Query: 302  acgatgaggtgcgcaagtgggtcggc 327
            |||| |||||||||||||||||||||
Sbjct: 1218 acgacgaggtgcgcaagtgggtcggc 1243



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 388  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
            ||||| ||||| ||||||||  | ||||||||  | |||||||| |||||||| ||||||
Sbjct: 1304 ttcgaccagcccaagatgaccatagagaagctcatggagtacggccacatgctggtccag 1363

                                         
Query: 448  gagcaggacaatgtcaagcgtgtgcagct 476
            |||||||| || |||||||||||||||||
Sbjct: 1364 gagcaggagaacgtcaagcgtgtgcagct 1392

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  264 bits (133), Expect = 3e-67
 Identities = 232/265 (87%)
 Strand = Plus / Minus

                                                                          
Query: 2      tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
              ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 108952 tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 108893

                                                                          
Query: 62     agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
              | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 108892 acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 108833

                                                                          
Query: 122    tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
              | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 108832 tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 108773

                                                                          
Query: 182    gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
              | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 108772 gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 108713

                                       
Query: 242    tcgacaccttcccaggacaatccat 266
              |||||| ||||||||| ||||||||
Sbjct: 108712 tcgacagcttcccaggccaatccat 108688



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                          
Query: 340    gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
              |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 108522 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 108463

                                                                          
Query: 400    aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
              ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 108462 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 108403

                                                                          
Query: 460    gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
              ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 108402 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 108343

                                                   
Query: 520    caggatgcgatgaagactggttccttctacggttaga 556
                 || || ||||||||||||||||||||||||||||
Sbjct: 108342 tccgacgccatgaagactggttccttctacggttaga 108306



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 2      tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaac 54
              ||||||||||||| ||   ||||||||||||||||||||| || |||||||||
Sbjct: 112629 tgatgaacatcgcggacaaccccaccaacgtgcagctcccagggatgtacaac 112577



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 139    atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 198
              ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 112519 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 112460

                  
Query: 199    ttcc 202
              ||||
Sbjct: 112459 ttcc 112456



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                
Query: 274    ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 323
              ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 108588 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 108539



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 340    gagaacattggcaagaggctggtgaactc 368
              |||||||| |||| |||||||||||||||
Sbjct: 112352 gagaacatcggcaggaggctggtgaactc 112324

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  264 bits (133), Expect = 3e-67
 Identities = 232/265 (87%)
 Strand = Plus / Minus

                                                                         
Query: 2     tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
             ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 30829 tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 30770

                                                                         
Query: 62    agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
             | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 30769 acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 30710

                                                                         
Query: 122   tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
             | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 30709 tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 30650

                                                                         
Query: 182   gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
             | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 30649 gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 30590

                                      
Query: 242   tcgacaccttcccaggacaatccat 266
             |||||| ||||||||| ||||||||
Sbjct: 30589 tcgacagcttcccaggccaatccat 30565



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                         
Query: 340   gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
             |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 30399 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 30340

                                                                         
Query: 400   aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
             ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 30339 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 30280

                                                                         
Query: 460   gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
             ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 30279 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 30220

                                                  
Query: 520   caggatgcgatgaagactggttccttctacggttaga 556
                || || ||||||||||||||||||||||||||||
Sbjct: 30219 tccgacgccatgaagactggttccttctacggttaga 30183



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 2     tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaac 54
             ||||||||||||| ||   ||||||||||||||||||||| || |||||||||
Sbjct: 34506 tgatgaacatcgcggacaaccccaccaacgtgcagctcccagggatgtacaac 34454



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 139   atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 198
             ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 34396 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 34337

                 
Query: 199   ttcc 202
             ||||
Sbjct: 34336 ttcc 34333



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 274   ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 323
             ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 30465 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 30416



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 340   gagaacattggcaagaggctggtgaactc 368
             |||||||| |||| |||||||||||||||
Sbjct: 34229 gagaacatcggcaggaggctggtgaactc 34201

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  264 bits (133), Expect = 3e-67
 Identities = 232/265 (87%)
 Strand = Plus / Minus

                                                                            
Query: 2        tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
                ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 28304091 tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 28304032

                                                                            
Query: 62       agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
                | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 28304031 acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 28303972

                                                                            
Query: 122      tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
                | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 28303971 tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 28303912

                                                                            
Query: 182      gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
                | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 28303911 gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 28303852

                                         
Query: 242      tcgacaccttcccaggacaatccat 266
                |||||| ||||||||| ||||||||
Sbjct: 28303851 tcgacagcttcccaggccaatccat 28303827



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                            
Query: 340      gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
                |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 28303661 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28303602

                                                                            
Query: 400      aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
                ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 28303601 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28303542

                                                                            
Query: 460      gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
                ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 28303541 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28303482

                                                     
Query: 520      caggatgcgatgaagactggttccttctacggttaga 556
                   || || ||||||||||||||||||||||||||||
Sbjct: 28303481 tccgacgccatgaagactggttccttctacggttaga 28303445



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 2        tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaac 54
                ||||||||||||| ||   ||||||||||||||||||||| || |||||||||
Sbjct: 28307768 tgatgaacatcgcggacaaccccaccaacgtgcagctcccagggatgtacaac 28307716



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 139      atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 198
                ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 28307658 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 28307599

                    
Query: 199      ttcc 202
                ||||
Sbjct: 28307598 ttcc 28307595



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 274      ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 323
                ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 28303727 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28303678



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 340      gagaacattggcaagaggctggtgaactc 368
                |||||||| |||| |||||||||||||||
Sbjct: 28307491 gagaacatcggcaggaggctggtgaactc 28307463

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  264 bits (133), Expect = 3e-67
 Identities = 232/265 (87%)
 Strand = Plus / Minus

                                                                            
Query: 2        tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
                ||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||
Sbjct: 28286540 tgatgaacatcgccgacaacccaaccaacgtgcagctccccgggatgtacaacaaggagg 28286481

                                                                            
Query: 62       agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
                | ||||||||||| |||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 28286480 acaacccccgtgtccccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 28286421

                                                                            
Query: 122      tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
                | |||||||| || |||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 28286420 tcatccgtgacgggcgtatggagaagttctactgggctcccacccgcgacgaccgtgtcg 28286361

                                                                            
Query: 182      gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
                | |||||||||||||||||||  |||||||| |||   ||||||    ||||||||||||
Sbjct: 28286360 gcgtctgcaagggtatcttccgcaccgacaacgtccccgacgaggacatcgtcaagatcg 28286301

                                         
Query: 242      tcgacaccttcccaggacaatccat 266
                |||||| ||||||||| ||||||||
Sbjct: 28286300 tcgacagcttcccaggccaatccat 28286276



 Score =  129 bits (65), Expect = 1e-26
 Identities = 179/217 (82%)
 Strand = Plus / Minus

                                                                            
Query: 340      gagaacattggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagcca 399
                |||||||||||||||||||||||||||||| |||| || ||   |   ||||||||||| 
Sbjct: 28286110 gagaacattggcaagaggctggtgaactcgagggagggcccaccggagttcgagcagccc 28286051

                                                                            
Query: 400      aagatgacagtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaat 459
                ||||||||  |||| |||||  | ||||||||  ||||||| ||  |||||||||| || 
Sbjct: 28286050 aagatgacgatcgaaaagctcatggagtacggatacatgcttgtgaaggagcaggagaac 28285991

                                                                            
Query: 460      gtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaac 519
                ||||||||||||||||| |||||    ||| ||||| |||| ||||| ||||| ||||||
Sbjct: 28285990 gtcaagcgtgtgcagctggctgagcagtacttgagcgaggctgctcttggtgacgctaac 28285931

                                                     
Query: 520      caggatgcgatgaagactggttccttctacggttaga 556
                   || || ||||||||||||||||||||||||||||
Sbjct: 28285930 tccgacgccatgaagactggttccttctacggttaga 28285894



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 2        tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaac 54
                ||||||||||||| ||   ||||||||||||||||||||| || |||||||||
Sbjct: 28290217 tgatgaacatcgcggacaaccccaccaacgtgcagctcccagggatgtacaac 28290165



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 139      atggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatc 198
                ||||| ||||||||||||||||||||||| || ||||| || || || |||| ||| |||
Sbjct: 28290107 atggacaagttctactgggctcccacccgcgaggaccgcattggcgtgtgcaggggcatc 28290048

                    
Query: 199      ttcc 202
                ||||
Sbjct: 28290047 ttcc 28290044



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 274      ttcggtgctctgcgtgctcgggtgtacgacgatgaggtgcgcaagtgggt 323
                ||||| ||||| ||||| || || |||||||| |||||||||||||||||
Sbjct: 28286176 ttcggcgctcttcgtgcccgtgtttacgacgacgaggtgcgcaagtgggt 28286127



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 340      gagaacattggcaagaggctggtgaactc 368
                |||||||| |||| |||||||||||||||
Sbjct: 28289940 gagaacatcggcaggaggctggtgaactc 28289912

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  242 bits (122), Expect = 1e-60
 Identities = 269/318 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           ||||||||||||||   |||||||||||| |||||||| ||||||||||||||| |||||
Sbjct: 456 atgaacatcgccgacaaccccaccaacgtccagctccccggcatgtacaacaagcaggag 515

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           |||||||| ||||||||| |||||||||| ||||| ||||| || |||||||| || || 
Sbjct: 516 aacccccgcgtgcccatcatcgtcaccggcaacgacttctccaccctctacgcccccctc 575

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 576 atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 635

                                                                       
Query: 184 gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 243
           |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 636 gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 695

                                                                       
Query: 244 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
           ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 696 gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 755

                             
Query: 304 gatgaggtgcgcaagtgg 321
           || |||||| | ||||||
Sbjct: 756 gacgaggtgaggaagtgg 773



 Score =  125 bits (63), Expect = 2e-25
 Identities = 171/207 (82%)
 Strand = Plus / Plus

                                                                        
Query: 349  ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 408
            |||||||||||||||||||||| ||| |||||   ||| |||| |||||| |||||||| 
Sbjct: 801  ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 860

                                                                        
Query: 409  gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 468
             | || |||||||| ||||||||  ||||||| || ||||||||||| || || ||| | 
Sbjct: 861  ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 920

                                                                        
Query: 469  gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 528
            |||||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| |||
Sbjct: 921  gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 980

                                       
Query: 529  atgaagactggttccttctacggttag 555
            || |||||||| |||||||| ||||||
Sbjct: 981  atcaagactggatccttctatggttag 1007

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  242 bits (122), Expect = 1e-60
 Identities = 269/318 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           ||||||||||||||   |||||||||||| |||||||| ||||||||||||||| |||||
Sbjct: 650 atgaacatcgccgacaaccccaccaacgtccagctccccggcatgtacaacaagcaggag 709

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           |||||||| ||||||||| |||||||||| ||||| ||||| || |||||||| || || 
Sbjct: 710 aacccccgcgtgcccatcatcgtcaccggcaacgacttctccaccctctacgcccccctc 769

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 770 atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 829

                                                                       
Query: 184 gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 243
           |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 830 gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 889

                                                                       
Query: 244 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
           ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 890 gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 949

                             
Query: 304 gatgaggtgcgcaagtgg 321
           || |||||| | ||||||
Sbjct: 950 gacgaggtgaggaagtgg 967



 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Plus

                                                                        
Query: 349  ggcaagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgaca 408
            |||||||||||||||||||||| ||| |||||   ||| |||| |||||| |||||||| 
Sbjct: 995  ggcaagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgacc 1054

                                                                        
Query: 409  gtcgagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgt 468
             | || |||||||| ||||||||  ||||||| || ||||||||||| || || ||| | 
Sbjct: 1055 ctggacaagctgctggagtacggcaacatgctggtgcaggagcaggagaacgtgaagagg 1114

                                                                        
Query: 469  gtgcagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcg 528
            |||||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| |||
Sbjct: 1115 gtgcagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcg 1174

                                
Query: 529  atgaagactggttccttcta 548
            || |||||||| ||||||||
Sbjct: 1175 atcaagactggatccttcta 1194

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score =  234 bits (118), Expect = 3e-58
 Identities = 268/318 (84%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            ||||||||||||||   |||||||||||| |||||||| ||||||||||||||| | |||
Sbjct: 757  atgaacatcgccgacaaccccaccaacgtccagctccccggcatgtacaacaagcaagag 816

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            |||||||| ||||||||| |||||||||| ||||| ||||| || |||||||| || || 
Sbjct: 817  aacccccgcgtgcccatcatcgtcaccggcaacgacttctccaccctctacgcccccctc 876

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 877  atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 936

                                                                        
Query: 184  gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 243
            |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 937  gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 996

                                                                        
Query: 244  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
            ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 997  gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 1056

                              
Query: 304  gatgaggtgcgcaagtgg 321
            || |||||| | ||||||
Sbjct: 1057 gacgaggtgaggaagtgg 1074



 Score =  103 bits (52), Expect = 7e-19
 Identities = 166/204 (81%)
 Strand = Plus / Plus

                                                                        
Query: 352  aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 411
            ||||||||||||||||||| ||| |||||   ||| |||| |||||| ||||||||  | 
Sbjct: 1105 aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1164

                                                                        
Query: 412  gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 471
            || |||||||| ||||||||  | ||||| || ||||| ||||| || || ||| | |||
Sbjct: 1165 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1224

                                                                        
Query: 472  cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 531
            ||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| ||||| 
Sbjct: 1225 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1284

                                    
Query: 532  aagactggttccttctacggttag 555
            |||||||| |||||||| ||||||
Sbjct: 1285 aagactggatccttctatggttag 1308

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score =  234 bits (118), Expect = 3e-58
 Identities = 268/318 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           ||||||||||||||   |||||||||||| |||||||| ||||||||||||||| | |||
Sbjct: 620 atgaacatcgccgacaaccccaccaacgtccagctccccggcatgtacaacaagcaagag 679

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           |||||||| ||||||||| |||||||||| ||||| ||||| || |||||||| || || 
Sbjct: 680 aacccccgcgtgcccatcatcgtcaccggcaacgacttctccaccctctacgcccccctc 739

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           |||||||| ||||||||||||||||||||||||||||||||| | || |||||  |||| 
Sbjct: 740 atccgtgacggtcgtatggagaagttctactgggctcccaccagggatgaccgggtcggc 799

                                                                       
Query: 184 gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 243
           |||||||  |||||||||  | ||||||| |||    | |||  |||| ||||| |||||
Sbjct: 800 gtctgcaccggtatcttcaggtccgacaacgtccccaaggaggatgtcatcaagctcgtc 859

                                                                       
Query: 244 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
           ||||||||||| || |||||||||||||| |||||||| ||| | ||  |||| ||||||
Sbjct: 860 gacaccttccccggccaatccattgacttcttcggtgcactgagggcgagggtctacgac 919

                             
Query: 304 gatgaggtgcgcaagtgg 321
           || |||||| | ||||||
Sbjct: 920 gacgaggtgaggaagtgg 937



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Plus

                                                                        
Query: 352  aagaggctggtgaactcgcgggacgggcccgtgaccttcgagcagccaaagatgacagtc 411
            ||||||||||||||||||| ||| |||||   ||| |||| |||||| ||||||||  | 
Sbjct: 968  aagaggctggtgaactcgctggaggggccgccgacgttcgcgcagcccaagatgaccctg 1027

                                                                        
Query: 412  gagaagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtg 471
            || |||||||| ||||||||  | ||||| || ||||| ||||| || || ||| | |||
Sbjct: 1028 gacaagctgctggagtacggcaatatgctggtgcaggaacaggagaacgtgaagagggtg 1087

                                                                        
Query: 472  cagcttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgatg 531
            ||||| || ||||  ||| ||||| |||||||||| ||||| || || ||||| ||||| 
Sbjct: 1088 cagctggccgacaagtacctgagcgaggcagctcttggtgacgccaatcaggacgcgatc 1147

                             
Query: 532  aagactggttccttcta 548
            |||||||| ||||||||
Sbjct: 1148 aagactggatccttcta 1164

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score =  226 bits (114), Expect = 7e-56
 Identities = 261/310 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 374 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacaacaaggagg 433

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | |||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||| || |
Sbjct: 434 acaacccccgcgtgcccatcatcgtcaccggcaacgacttctccacgctctacgcgccgc 493

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 494 tcatccgcgacggccgcatggagaagttctactgggcgcccacccgcgaggaccgcatcg 553

                                                                       
Query: 182 gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
           | ||||||||||| |||||||  ||||||   |||   || |||   |||||| || | |
Sbjct: 554 gcgtctgcaagggcatcttccgcaccgacggcgtcgacgaggagcacgtcgtccagctgg 613

                                                                       
Query: 242 tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
           ||||||||||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||
Sbjct: 614 tcgacaccttccctggccagtccatcgacttcttcggcgcgctgcgtgcccgggtctacg 673

                     
Query: 302 acgatgaggt 311
           |||| |||||
Sbjct: 674 acgacgaggt 683



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                       
Query: 388 ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
           ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 760 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 819

                                                                       
Query: 448 gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 507
           |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 820 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 879

                                                   
Query: 508 ggtgatgctaaccaggatgcgatgaagactggttccttct 547
           ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 880 ggtgaagccaacgaggacgccatgaagactggctccttct 919

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score =  218 bits (110), Expect = 2e-53
 Identities = 260/310 (83%)
 Strand = Plus / Plus

                                                                        
Query: 2    tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
            ||||||||||||||||   ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 769  tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacaacaaggagg 828

                                                                        
Query: 62   agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
            | |||||||| ||||||||| |||||||||| ||||| ||||| ||||||||||| || |
Sbjct: 829  acaacccccgcgtgcccatcatcgtcaccggcaacgacttctccacgctctacgcgccgc 888

                                                                        
Query: 122  tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
            | ||||| || || || |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 889  tcatccgcgacggccgcatggagaagttctactgggcgcccacccgcgaggaccgcatcg 948

                                                                        
Query: 182  gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
            | ||||||||||| |||||||  ||||||   |||   || |||   |||||| || | |
Sbjct: 949  gcgtctgcaagggcatcttccgcaccgacggcgtcgacgaggagcacgtcgtccagctgg 1008

                                                                        
Query: 242  tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
            ||||||||||||| || || ||||| || || ||||| || |||||||| ||||| ||||
Sbjct: 1009 tcgacaccttccctggccagtccatcgatttcttcggcgcgctgcgtgcccgggtctacg 1068

                      
Query: 302  acgatgaggt 311
            |||| |||||
Sbjct: 1069 acgacgaggt 1078



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                        
Query: 388  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
            ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214

                                                                        
Query: 448  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 507
            |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274

                                                    
Query: 508  ggtgatgctaaccaggatgcgatgaagactggttccttct 547
            ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score =  196 bits (99), Expect = 6e-47
 Identities = 180/207 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           |||||||||||||||  |||||||||||| |||||||| || |||||||||||||| |||
Sbjct: 647 atgaacatcgccgataaccccaccaacgtccagctccccggtatgtacaacaaggaagag 706

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           ||||||||||| |||||| ||||||| |||||||||||||| || || || |||||||| 
Sbjct: 707 aacccccgtgtccccatcatcgtcactggtaacgatttctccacactgtatgctcctctc 766

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           |||||||| |||||||||||||| || |||||||| || ||  | |||||||||||||||
Sbjct: 767 atccgtgacggtcgtatggagaaattttactgggcaccaactagggacgaccgtatcggt 826

                                      
Query: 184 gtctgcaagggtatcttccagaccgac 210
           || ||||| ||||| |||  |||||||
Sbjct: 827 gtttgcaaaggtattttcaggaccgac 853



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 239 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 298
           |||||||||||||||| || |||||||| || || ||||||||  || | |||||||| |
Sbjct: 882 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 941

               
Query: 299 acga 302
           ||||
Sbjct: 942 acga 945

---

>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.2 mRNA, complete cds
          Length = 1815

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 937  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 996

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 997  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 1056

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1057 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1116

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1117 gtctgcaagggtatcttc 1134

---

>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.3 mRNA, complete cds
          Length = 1928

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 937  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 996

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 997  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 1056

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1057 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1116

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1117 gtctgcaagggtatcttc 1134

---

>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA)
            transcript variant AT2G39730.1 mRNA, complete cds
          Length = 1833

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 966  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 1025

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 1026 aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 1085

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1086 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1145

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1146 gtctgcaagggtatcttc 1163

---

>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein
            (At2g39730) mRNA, complete cds
          Length = 1697

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 848  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 907

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 908  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 967

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 968  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1027

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1028 gtctgcaagggtatcttc 1045

---

>gb|BT000613.1| Arabidopsis thaliana Rubsico activase  (At2g39730/T5I7.3) mRNA,
           complete cds
          Length = 1425

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 763 atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 822

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 823 aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 882

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 883 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 942

                             
Query: 184 gtctgcaagggtatcttc 201
           ||||||||||||||||||
Sbjct: 943 gtctgcaagggtatcttc 960

---

>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete
             sequence
          Length = 92624

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Minus

                                                                         
Query: 4     atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
             |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 14351 atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 14292

                                                                         
Query: 64    aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
             ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 14291 aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 14232

                                                                         
Query: 124   atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
             ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 14231 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 14172

                               
Query: 184   gtctgcaagggtatcttc 201
             ||||||||||||||||||
Sbjct: 14171 gtctgcaagggtatcttc 14154

---

>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds
          Length = 1674

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 851  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 910

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 911  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 970

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 971  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1030

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1031 gtctgcaagggtatcttc 1048

---

>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1655

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 848  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 907

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 908  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 967

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 968  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1027

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1028 gtctgcaagggtatcttc 1045

---

>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds
          Length = 1674

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 851  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 910

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 911  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 970

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 971  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1030

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1031 gtctgcaagggtatcttc 1048

---

>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence
          Length = 1787

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 966  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 1025

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 1026 aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 1085

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 1086 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1145

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1146 gtctgcaagggtatcttc 1163

---

>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase
            activase (rca) gene, complete cds
          Length = 3974

 Score =  194 bits (98), Expect = 2e-46
 Identities = 173/198 (87%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 2932 atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 2991

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 2992 aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 3051

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 3052 atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 3111

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 3112 gtctgcaagggtatcttc 3129

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score =  192 bits (97), Expect = 9e-46
 Identities = 220/261 (84%)
 Strand = Plus / Plus

                                                                        
Query: 21   ccccaccaacgtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccat 80
            ||||||||| || || |||||||| |||||||||||| | |||||| ||||||| |||||
Sbjct: 904  ccccaccaatgtccaactccctggtatgtacaacaagcaagagaacgcccgtgttcccat 963

                                                                        
Query: 81   cgtcgtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtat 140
              ||||||| |||||||| ||||| ||  | |||||||| || |||||||||||||||||
Sbjct: 964  tatcgtcactggtaacgacttctccaccttgtacgctccccttatccgtgatggtcgtat 1023

                                                                        
Query: 141  ggagaagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatctt 200
            |||||||||||||||||||||||||||||| ||||||||||||||   ||  ||||||||
Sbjct: 1024 ggagaagttctactgggctcccacccgtgaggaccgtatcggtgttgccaccggtatctt 1083

                                                                        
Query: 201  ccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggaca 260
            |  ||||||||||||   ||| ||    || |||||| |||||||||||||||| || ||
Sbjct: 1084 caggaccgacaatgttcctgaggaccacgttgtcaagctcgtcgacaccttccctggcca 1143

                                 
Query: 261  atccattgactttttcggtgc 281
            ||| ||||| || ||||||||
Sbjct: 1144 atctattgatttcttcggtgc 1164

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score =  190 bits (96), Expect = 4e-45
 Identities = 252/304 (82%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 315 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 374

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 375 acaacccgcgtgtgcccatcgtcgtcaccggcaacgacttctccacgctgtacgcgccgc 434

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | || || || || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 435 tcattcgcgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 494

                                                                       
Query: 182 gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
           | || |||||||| |||||||  ||||||   |||   ||||||   |||||| || |||
Sbjct: 495 gcgtgtgcaagggcatcttccgcaccgacggcgtccccgacgagcacgtcgtccagctcg 554

                                                                       
Query: 242 tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
           ||||| ||||||| || || ||||| ||||| ||||| || || || || ||||||||||
Sbjct: 555 tcgacgccttcccgggccagtccatcgacttcttcggcgccctccgcgcccgggtgtacg 614

               
Query: 302 acga 305
           ||||
Sbjct: 615 acga 618

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score =  190 bits (96), Expect = 4e-45
 Identities = 252/304 (82%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 323 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 382

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 383 acaacccgcgtgtgcccatcgtcgtcaccggcaacgacttctccacgctgtacgcgccgc 442

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || ||||| |||||||||||||| |||||||| || ||||| ||||
Sbjct: 443 tcatccgcgacgggcgcatggacaagttctactgggcgcccacccgggaggaccgcatcg 502

                                                                       
Query: 182 gtgtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcg 241
           | || |||||||| |||||||  ||||||   |||   ||||||   |||||| || |||
Sbjct: 503 gcgtgtgcaagggcatcttccgcaccgacggcgtccccgacgagcacgtcgtccagctcg 562

                                                                       
Query: 242 tcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacg 301
           ||||| ||||||| || || ||||| ||||| ||||| || || || || ||||||||||
Sbjct: 563 tcgacgccttcccgggccagtccatcgacttcttcggcgccctccgcgcccgggtgtacg 622

               
Query: 302 acga 305
           ||||
Sbjct: 623 acga 626

---

>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds
          Length = 1693

 Score =  186 bits (94), Expect = 6e-44
 Identities = 172/198 (86%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| ||||| || || |||||||||||||| |||
Sbjct: 840  atgaacattgctgataacccaaccaacgtccagcttccaggaatgtacaacaaggaagag 899

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| || || ||||||||||| 
Sbjct: 900  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccctatacgctcctctc 959

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct: 960  atccgtgatggacgtatggagaagttctactgggccccgacccgtgaagaccgtatcggt 1019

                              
Query: 184  gtctgcaagggtatcttc 201
            ||||||||||||||||||
Sbjct: 1020 gtctgcaagggtatcttc 1037

---

>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence
          Length = 633

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 329 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 388

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 389 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 448

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 449 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 508

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 509 gcgtgtgcaagggcatcttcc 529

---

>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence
          Length = 635

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 331 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 390

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 391 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 450

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 451 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 510

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 511 gcgtgtgcaagggcatcttcc 531

---

>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence
          Length = 639

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 335 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 394

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 395 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 454

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 455 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 514

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 515 gcgtgtgcaagggcatcttcc 535

---

>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence
          Length = 635

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 331 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 390

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 391 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 450

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 451 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 510

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 511 gcgtgtgcaagggcatcttcc 531

---

>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence
          Length = 635

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 331 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 390

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 391 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 450

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 451 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 510

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 511 gcgtgtgcaagggcatcttcc 531

---

>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence
          Length = 635

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 331 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 390

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 391 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 450

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 451 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 510

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 511 gcgtgtgcaagggcatcttcc 531

---

>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence
          Length = 635

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 331 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 390

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 391 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 450

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 451 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 510

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 511 gcgtgtgcaagggcatcttcc 531

---

>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence
          Length = 637

 Score =  184 bits (93), Expect = 2e-43
 Identities = 174/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 333 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 392

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 393 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 452

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | |||||||| || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 453 tcatccgtgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 512

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 513 gcgtgtgcaagggcatcttcc 533

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score =  180 bits (91), Expect = 4e-42
 Identities = 178/207 (85%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           |||||||||||||||  |||||||||||| |||||||| || |||||||||||||| |||
Sbjct: 646 atgaacatcgccgataaccccaccaacgtccagctccccggtatgtacaacaaggaagag 705

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           ||||||||||| |||||  ||||||| |||||||||||||| || || || |||||||| 
Sbjct: 706 aacccccgtgtccccattatcgtcactggtaacgatttctccacactgtatgctcctctc 765

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           |||||||| |||||||||||||| || |||||||| || ||  | ||||||||| |||||
Sbjct: 766 atccgtgacggtcgtatggagaaattttactgggcaccaactagggacgaccgtgtcggt 825

                                      
Query: 184 gtctgcaagggtatcttccagaccgac 210
           || ||||| ||||| |||  |||||||
Sbjct: 826 gtttgcaaaggtattttcaggaccgac 852



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 54/64 (84%)
 Strand = Plus / Plus

                                                                       
Query: 239 tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 298
           |||||||||||||||| || |||||||| || || ||||||||  || | |||||||| |
Sbjct: 881 tcgtcgacaccttccccggccaatccatcgatttcttcggtgccttgagggctcgggttt 940

               
Query: 299 acga 302
           ||||
Sbjct: 941 acga 944

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score =  178 bits (90), Expect = 1e-41
 Identities = 159/182 (87%)
 Strand = Plus / Plus

                                                                        
Query: 34   cagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggt 93
            ||||||||||| |||||||||||||| |||||||| |||||||| ||| | ||||| |||
Sbjct: 862  cagctccctggtatgtacaacaaggaagagaaccctcgtgtgcctatcattgtcactggt 921

                                                                        
Query: 94   aacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctac 153
            ||||| ||||||||  | ||||||||||| |||||||||||||||||||| || ||||||
Sbjct: 922  aacgacttctcgacattgtacgctcctcttatccgtgatggtcgtatggaaaaattctac 981

                                                                        
Query: 154  tgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatcttccagaccgacaat 213
            |||||||| ||| | || |||||||| ||||||||||||||||| |||  ||| ||||||
Sbjct: 982  tgggctcctaccagggaagaccgtattggtgtctgcaagggtattttcaggactgacaat 1041

              
Query: 214  gt 215
            ||
Sbjct: 1042 gt 1043



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 478  gctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgc 527
            |||||||  ||||||||  |||| || || ||||||||||||||||||||
Sbjct: 1306 gctgacaagtacatgagtgaggctgcccttggtgatgctaaccaggatgc 1355

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score =  178 bits (90), Expect = 1e-41
 Identities = 172/201 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||||||||||||
Sbjct: 769 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacaacaaggagg 828

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||     | ||||||||| |||||||||| ||||| ||||| ||||||||||| || |
Sbjct: 829 acaannnnngcgtgcccatcatcgtcaccggcaacgacttctccacgctctacgcgccgc 888

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || |||||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 889 tcatccgcgacggccgcatggagaagttctactgggcgcccacccgcgaggaccgcatcg 948

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | ||||||||||| |||||||
Sbjct: 949 gcgtctgcaagggcatcttcc 969



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                        
Query: 388  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
            ||||||||||| ||||| ||  ||||||||||  | |||||||| |||||||| ||   |
Sbjct: 1155 ttcgagcagcccaagataacgatcgagaagctcttggagtacggacacatgctggtggcg 1214

                                                                        
Query: 448  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 507
            |||||||| || |||||||||||||||||||||||||  ||| | | | |||| ||||| 
Sbjct: 1215 gagcaggagaacgtcaagcgtgtgcagcttgctgacaagtacctcaacgaggctgctctt 1274

                                                    
Query: 508  ggtgatgctaaccaggatgcgatgaagactggttccttct 547
            ||||| || ||| |||| || ||||||||||| |||||||
Sbjct: 1275 ggtgaagccaacgaggacgccatgaagactggctccttct 1314

---

>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence
          Length = 637

 Score =  176 bits (89), Expect = 6e-41
 Identities = 173/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 333 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 392

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 393 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 452

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 453 tcatccgcgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 512

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 513 gcgtgtgcaagggcatcttcc 533

---

>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence
          Length = 635

 Score =  176 bits (89), Expect = 6e-41
 Identities = 173/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 331 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 390

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 391 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 450

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 451 tcatccgcgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 510

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 511 gcgtgtgcaagggcatcttcc 531

---

>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence
          Length = 633

 Score =  176 bits (89), Expect = 6e-41
 Identities = 173/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 329 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 388

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 389 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 448

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 449 tcatccgcgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 508

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 509 gcgtgtgcaagggcatcttcc 529

---

>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence
          Length = 633

 Score =  176 bits (89), Expect = 6e-41
 Identities = 173/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 329 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 388

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 389 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 448

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 449 tcatccgcgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 508

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 509 gcgtgtgcaagggcatcttcc 529

---

>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence
          Length = 635

 Score =  176 bits (89), Expect = 6e-41
 Identities = 173/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 331 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 390

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 391 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 450

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 451 tcatccgcgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 510

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 511 gcgtgtgcaagggcatcttcc 531

---

>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence
          Length = 639

 Score =  176 bits (89), Expect = 6e-41
 Identities = 173/201 (86%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||||||||||||||||||||| || ||||||| ||||| ||
Sbjct: 335 tgatgaacatcgccgacaaccccaccaacgtgcagctcccggggatgtacagcaaggtgg 394

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           | ||||| |||||||||||| |||||||||| ||||| ||||| ||||| ||||| || |
Sbjct: 395 acaacccgcgtgtgcccatcatcgtcaccggcaacgacttctccacgctgtacgcgccgc 454

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           | ||||| || || || ||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 455 tcatccgcgacgggcgcatggacaagttctactgggcgcccacccgcgacgaccgcatcg 514

                                
Query: 182 gtgtctgcaagggtatcttcc 202
           | || |||||||| |||||||
Sbjct: 515 gcgtgtgcaagggcatcttcc 535

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score =  174 bits (88), Expect = 2e-40
 Identities = 181/212 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            ||||||||||| |||  |||||||||||| |||||||| || |||||||||||||| |||
Sbjct: 832  atgaacatcgctgataaccccaccaacgttcagctccccggtatgtacaacaaggaagag 891

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||||| ||||| || ||| | |||||||||||||||||||||||||| ||||| || || 
Sbjct: 892  aaccctcgtgttccgatcattgtcaccggtaacgatttctcgacgctgtacgcgccgctc 951

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            |||||||| ||||||||||||||||| |||||||| |||||| | || ||  | ||||||
Sbjct: 952  atccgtgacggtcgtatggagaagttttactgggcacccaccagggaagataggatcggt 1011

                                            
Query: 184  gtctgcaagggtatcttccagaccgacaatgt 215
            || ||||  ||||| |||  ||||||||||||
Sbjct: 1012 gtttgcacaggtattttcaggaccgacaatgt 1043



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                      
Query: 244  gacaccttcccaggacaatccattgactttttcggtgctctg 285
            ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1072 gacaccttcccgggccaatccattgactttttcggtgctctg 1113

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score =  172 bits (87), Expect = 9e-40
 Identities = 144/163 (88%)
 Strand = Plus / Plus

                                                                        
Query: 28   aacgtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtc 87
            ||||| ||||| || || ||||||||||||||||||||||||||||| || ||| | |||
Sbjct: 872  aacgtccagcttccaggtatgtacaacaaggaggagaacccccgtgtcccaatcattgtc 931

                                                                        
Query: 88   accggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaag 147
            ||||||||||||||||| ||  | ||||||||||| |||||||| |||||||||||||||
Sbjct: 932  accggtaacgatttctcaacattgtacgctcctctcatccgtgacggtcgtatggagaag 991

                                                       
Query: 148  ttctactgggctcccacccgtgacgaccgtatcggtgtctgca 190
            |||||||||||||||||||| || || ||||| || |||||||
Sbjct: 992  ttctactgggctcccacccgcgaagatcgtattggagtctgca 1034



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Plus

                                                                        
Query: 388  ttcgagcagccaaagatgacagtcgagaagctgctagagtacgggcacatgctcgtccag 447
            ||||||||||| ||||||||  |||| ||||| || ||||||||  ||||||| ||||| 
Sbjct: 1232 ttcgagcagccgaagatgactatcgaaaagctcctcgagtacggaaacatgcttgtccaa 1291

                                                                        
Query: 448  gagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgagccaggcagctctg 507
            ||||| || ||||| ||| | || ||  | ||||| |  ||| ||||| |||| ||||| 
Sbjct: 1292 gagcaagagaatgtgaagagagttcaattggctgataagtacttgagcgaggctgctctt 1351

                        
Query: 508  ggtgatgctaac 519
            ||||||||||||
Sbjct: 1352 ggtgatgctaac 1363



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 244  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
            |||||||||||||| ||||| ||||| || || |||||  || | ||| |||| ||||||
Sbjct: 1088 gacaccttcccaggccaatctattgatttctttggtgccttgagggctagggtttacgac 1147

                              
Query: 304  gatgaggtgcgcaagtgg 321
            ||||| ||| | ||||||
Sbjct: 1148 gatgaagtgaggaagtgg 1165

---

>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds
          Length = 1627

 Score =  163 bits (82), Expect = 8e-37
 Identities = 175/206 (84%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  |||||| || |||||||| ||||| |||||||||||||| || 
Sbjct: 837  atgaacattgctgataaccccacaaatgtgcagcttcctggtatgtacaacaaggaagat 896

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| |||||||||||||| | ||||| |||||||||||||| || || || |||||||| 
Sbjct: 897  aacgcccgtgtgcccatcattgtcactggtaacgatttctcaacactttatgctcctctc 956

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            ||||||||||||||||||||||||||||||||||| || ||  | || ||||| || |||
Sbjct: 957  atccgtgatggtcgtatggagaagttctactgggcaccaacaagggaagaccgcattggt 1016

                                      
Query: 184  gtctgcaagggtatcttccagaccga 209
            || |||||||| || |||| ||||||
Sbjct: 1017 gtttgcaagggaattttccggaccga 1042

---

>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase
            {alternatively spliced} [spinach, Genomic, 3691 nt]
          Length = 3691

 Score =  159 bits (80), Expect = 1e-35
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                        
Query: 37   ctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggtaac 96
            |||||||| |||||||||||| |||| ||  ||||||| |||||| | || || ||||||
Sbjct: 2662 ctccctggtatgtacaacaagcaggacaatgcccgtgtccccatcattgttactggtaac 2721

                                                                        
Query: 97   gatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgg 156
            |||||||| ||  | |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2722 gatttctccaccttgtacgctccccttatccgtgatggtcgtatggagaagttctactgg 2781

                                            
Query: 157  gctcccacccgtgacgaccgtatcggtgtctg 188
            |||||||||||||| |||||||| ||||||||
Sbjct: 2782 gctcccacccgtgaggaccgtattggtgtctg 2813

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score =  159 bits (80), Expect = 1e-35
 Identities = 134/152 (88%)
 Strand = Plus / Plus

                                                                        
Query: 37   ctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggtaac 96
            |||||||| |||||||||||| |||| ||  ||||||| |||||| | || || ||||||
Sbjct: 1034 ctccctggtatgtacaacaagcaggacaatgcccgtgtccccatcattgttactggtaac 1093

                                                                        
Query: 97   gatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgg 156
            |||||||| ||  | |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1094 gatttctccaccttgtacgctccccttatccgtgatggtcgtatggagaagttctactgg 1153

                                            
Query: 157  gctcccacccgtgacgaccgtatcggtgtctg 188
            |||||||||||||| |||||||| ||||||||
Sbjct: 1154 gctcccacccgtgaggaccgtattggtgtctg 1185



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                        
Query: 239  tcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgt 298
            |||| ||| ||||||| |||||||| || ||||||||||| ||  || | ||||| || |
Sbjct: 1236 tcgttgacgccttccctggacaatctatcgactttttcggagcgttgagggctcgtgtat 1295

                      
Query: 299  acgacgatga 308
            ||||||||||
Sbjct: 1296 acgacgatga 1305

---

>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear
           gene for chloroplast product
          Length = 1671

 Score =  151 bits (76), Expect = 3e-33
 Identities = 115/128 (89%)
 Strand = Plus / Plus

                                                                       
Query: 31  gtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcacc 90
           |||||||| ||||| |||||||||||||| |||||| |||||||||||||| | ||||||
Sbjct: 868 gtgcagcttcctggtatgtacaacaaggaagagaacgcccgtgtgcccatcattgtcacc 927

                                                                       
Query: 91  ggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttc 150
           ||||| |||||||| ||||| || |||||||| || |||||||| |||||||||||||||
Sbjct: 928 ggtaatgatttctcaacgctgtatgctcctctcattcgtgatgggcgtatggagaagttc 987

                   
Query: 151 tactgggc 158
           ||||||||
Sbjct: 988 tactgggc 995

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score =  149 bits (75), Expect = 1e-32
 Identities = 159/187 (85%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           |||||||| || |||  ||||||||| || || |||||||| |||||||||||||| || 
Sbjct: 270 atgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagac 329

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           ||  | |||||||||||| | ||||||||||| |||||||| || || || |||||||| 
Sbjct: 330 aatgctcgtgtgcccatcattgtcaccggtaatgatttctcaacactttatgctcctctc 389

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           |||||||||||||||||||||||||||||||||||||| ||  | || || ||||| |||
Sbjct: 390 atccgtgatggtcgtatggagaagttctactgggctcctactagagaagatcgtattggt 449

                  
Query: 184 gtctgca 190
           |||||||
Sbjct: 450 gtctgca 456



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                       
Query: 232 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgct 291
           |||||||| || ||||||||||| || |||||||| || || ||||||||  || | |||
Sbjct: 498 gtcaagattgttgacaccttccctggccaatccatcgatttcttcggtgcattgagggct 557

                                           
Query: 292 cgggtgtacgacgatgaggtgcgcaagtgggt 323
            | |||||||| ||||| ||| | ||||||||
Sbjct: 558 agagtgtacgatgatgaagtgaggaagtgggt 589

---

>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase
           activase (Rca) gene, partial sequence
          Length = 648

 Score =  143 bits (72), Expect = 8e-31
 Identities = 162/192 (84%)
 Strand = Plus / Plus

                                                                       
Query: 25  accaacgtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtc 84
           ||||| || ||||||||||| |||||||||||| |||| ||  | ||||| |||||| ||
Sbjct: 57  accaatgtccagctccctggtatgtacaacaagcaggacaatgctcgtgtacccatcatc 116

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           || || |||||||| ||||| ||  | || |||||||| |||||||||||||||||||||
Sbjct: 117 gttactggtaacgacttctctaccttgtatgctcctctcatccgtgatggtcgtatggag 176

                                                                       
Query: 145 aagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatcttccag 204
           || ||||||||||| ||||| ||||| |||||||| ||||| ||||  |||||||||  |
Sbjct: 177 aaattctactgggcacccactcgtgaggaccgtattggtgtttgcactggtatcttcagg 236

                       
Query: 205 accgacaatgtc 216
           || |||||||||
Sbjct: 237 actgacaatgtc 248

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score =  139 bits (70), Expect = 1e-29
 Identities = 136/158 (86%)
 Strand = Plus / Plus

                                                                        
Query: 34   cagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggt 93
            ||||| |||||||||||||||||||| |||||||| ||||| |||||| | ||||| |||
Sbjct: 862  cagcttcctggcatgtacaacaaggaagagaaccctcgtgttcccatcattgtcactggt 921

                                                                        
Query: 94   aacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctac 153
            ||||| ||||| ||  | || || ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 922  aacgacttctcaacattgtatgcccctcttatccgtgatggccgtatggagaaattctac 981

                                                  
Query: 154  tgggctcccacccgtgacgaccgtatcggtgtctgcaa 191
            ||||| |||||| | || |||||||| |||||||||||
Sbjct: 982  tgggcacccaccagggaggaccgtattggtgtctgcaa 1019



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 68/84 (80%)
 Strand = Plus / Plus

                                                                        
Query: 435  catgctcgtccaggagcaggacaatgtcaagcgtgtgcagcttgctgacacctacatgag 494
            |||||| |||||||||||||| || |||||| | || ||  | |||||||  ||||||  
Sbjct: 1263 catgcttgtccaggagcaggagaacgtcaagagagttcaattagctgacaaatacatgtc 1322

                                    
Query: 495  ccaggcagctctgggtgatgctaa 518
            | |||| ||||| |||||||||||
Sbjct: 1323 cgaggctgctcttggtgatgctaa 1346

---

>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase pseudogene, partial sequence
          Length = 472

 Score =  139 bits (70), Expect = 1e-29
 Identities = 136/158 (86%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           |||||||| || |||  ||| ||||| || || |||||||| |||||| |||||||||||
Sbjct: 262 atgaacattgctgataacccaaccaatgtccaactccctggaatgtacgacaaggaggag 321

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           |||||||||||||||||| ||||||| || |||||||||||  | || || ||||| || 
Sbjct: 322 aacccccgtgtgcccatcatcgtcacaggaaacgatttctcagcactatatgctcccctt 381

                                                 
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcc 161
           ||||| |||||||||||||| |||||||||||||||||
Sbjct: 382 atccgcgatggtcgtatggaaaagttctactgggctcc 419

---

>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds
          Length = 1216

 Score =  137 bits (69), Expect = 5e-29
 Identities = 150/177 (84%)
 Strand = Plus / Plus

                                                                       
Query: 25  accaacgtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtc 84
           ||||| || |||||||| || |||||||||||||| ||||| || ||||| || ||| ||
Sbjct: 696 accaatgttcagctcccgggtatgtacaacaaggaagagaatccacgtgtaccgatcatc 755

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           ||||| ||||| || ||||||||  | ||||||||||| || ||||||||||||||||||
Sbjct: 756 gtcacaggtaatgacttctcgacattgtacgctcctctcattcgtgatggtcgtatggag 815

                                                                    
Query: 145 aagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatcttc 201
           || ||||||||||| |||||| | || ||||| || ||||||||||  |||||||||
Sbjct: 816 aaattctactgggcgcccaccagagaagaccgaattggtgtctgcactggtatcttc 872

---

>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds
          Length = 1634

 Score =  137 bits (69), Expect = 5e-29
 Identities = 150/177 (84%)
 Strand = Plus / Plus

                                                                        
Query: 25   accaacgtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtc 84
            ||||| || |||||||| || |||||||||||||| ||||| || ||||| || ||| ||
Sbjct: 869  accaatgttcagctcccgggtatgtacaacaaggaagagaatccacgtgtaccgatcatc 928

                                                                        
Query: 85   gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
            ||||| ||||| || ||||||||  | ||||||||||| || ||||||||||||||||||
Sbjct: 929  gtcacaggtaatgacttctcgacattgtacgctcctctcattcgtgatggtcgtatggag 988

                                                                     
Query: 145  aagttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatcttc 201
            || ||||||||||| |||||| | || ||||| || ||||||||||  |||||||||
Sbjct: 989  aaattctactgggcgcccaccagagaagaccgaattggtgtctgcactggtatcttc 1045

---

>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence
          Length = 253

 Score =  133 bits (67), Expect = 8e-28
 Identities = 124/143 (86%)
 Strand = Plus / Plus

                                                                       
Query: 48  gtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgac 107
           ||||||||| || |||||||||||||||||| || | ||||||||||| |||||||| ||
Sbjct: 1   gtacaacaaagaagagaacccccgtgtgcccgtcattgtcaccggtaatgatttctccac 60

                                                                       
Query: 108 gctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacccg 167
             | || ||||| || ||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 61  cttgtatgctccccttatccgtgatggtcgtatggagaaattctactgggcaccaacccg 120

                                  
Query: 168 tgacgaccgtatcggtgtctgca 190
            ||||| ||||| ||||||||||
Sbjct: 121 cgacgatcgtattggtgtctgca 143

---

>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase
           (pTA1.1)
          Length = 1011

 Score =  121 bits (61), Expect = 3e-24
 Identities = 247/309 (79%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
           ||||||||||| |||  ||| || || || |||||||| || |||||||||||| | |||
Sbjct: 154 atgaacatcgctgataacccgacaaatgtccagctccccggtatgtacaacaagcaagag 213

                                                                       
Query: 64  aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
           ||| || | || |||||  | ||||| |||||||| ||||| ||  | || |||||||| 
Sbjct: 214 aacgccagggtccccattattgtcactggtaacgacttctccacattgtatgctcctctt 273

                                                                       
Query: 124 atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
           ||||||||||||||||||||||||||||| ||||| || ||  | || ||  | || |||
Sbjct: 274 atccgtgatggtcgtatggagaagttctattgggcaccaactagggaagatagaattggt 333

                                                                       
Query: 184 gtctgcaagggtatcttccagaccgacaatgtcagtgacgagtctgtcgtcaagatcgtc 243
           || ||||||||||| |||  ||||||||| ||   ||| ||  |||| || ||||| |||
Sbjct: 334 gtttgcaagggtattttcaggaccgacaacgtgcctgaggaagctgttgtaaagattgtc 393

                                                                       
Query: 244 gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
           || |||||||| |||||||| |||||||| || ||||||||| | || || || ||||| 
Sbjct: 394 gataccttccctggacaatctattgacttctttggtgctctgagggcacgagtatacgat 453

                    
Query: 304 gatgaggtg 312
           |||||||||
Sbjct: 454 gatgaggtg 462

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score =  113 bits (57), Expect = 7e-22
 Identities = 165/201 (82%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            ||||||||||| |||  ||| |||||||||||||| || ||| |||||||  ||| | ||
Sbjct: 1661 atgaacatcgctgataaccctaccaacgtgcagctgcccggcgtgtacaaggaggtgcag 1720

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            |  |||||||| ||||| |||  ||| |||||||||||||| || || ||||| || || 
Sbjct: 1721 attccccgtgttcccattgtctgcacgggtaacgatttctccaccctgtacgcccccctc 1780

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcggt 183
            |||||||| || || |||||||||| |||||||   ||||||||||| ||||| ||||| 
Sbjct: 1781 atccgtgacggccgcatggagaagtactactggaaccccacccgtgaggaccgcatcggc 1840

                                 
Query: 184  gtctgcaagggtatcttccag 204
            ||||||| ||| |||||||||
Sbjct: 1841 gtctgcatgggaatcttccag 1861



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 448  gagcaggacaatgtcaagcgtgtgcagct 476
            |||||||| ||||||||||| ||||||||
Sbjct: 2105 gagcaggagaatgtcaagcgcgtgcagct 2133

---

>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase
            (pJQ4)
          Length = 1655

 Score =  105 bits (53), Expect = 2e-19
 Identities = 227/285 (79%)
 Strand = Plus / Plus

                                                                        
Query: 28   aacgtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtc 87
            ||||| |||||||| || |||||||||||| | |||||| || | || |||||  | |||
Sbjct: 822  aacgtccagctccccggtatgtacaacaagcaagagaacgccagagtccccattattgtc 881

                                                                        
Query: 88   accggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaag 147
            || |||||||| ||||| ||  | || |||||||| ||||||||||||||||||||||||
Sbjct: 882  actggtaacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaag 941

                                                                        
Query: 148  ttctactgggctcccacccgtgacgaccgtatcggtgtctgcaagggtatcttccagacc 207
            ||||| ||||| || ||  | || ||  | || ||||| ||||||||||| |||  ||||
Sbjct: 942  ttctattgggcaccaactagggaagatagaattggtgtttgcaagggtattttcaggacc 1001

                                                                        
Query: 208  gacaatgtcagtgacgagtctgtcgtcaagatcgtcgacaccttcccaggacaatccatt 267
            ||||| ||   ||| ||  | ||  | ||||| ||||| |||||||| |||||||| |||
Sbjct: 1002 gacaacgtgcctgaggaagccgttataaagattgtcgataccttccctggacaatctatt 1061

                                                         
Query: 268  gactttttcggtgctctgcgtgctcgggtgtacgacgatgaggtg 312
            ||||| || ||||||||| | || || || ||||| |||||||||
Sbjct: 1062 gacttctttggtgctctgagggcacgagtatacgatgatgaggtg 1106

---

>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase
          Length = 1652

 Score =  105 bits (53), Expect = 2e-19
 Identities = 155/187 (82%), Gaps = 4/187 (2%)
 Strand = Plus / Plus

                                                                        
Query: 4    atgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggaggag 63
            |||||||| || |||  ||| |||||||| |||||||| || |||||||||||||| |||
Sbjct: 832  atgaacattgctgataacccaaccaacgtccagctcccaggaatgtacaacaaggaagag 891

                                                                        
Query: 64   aacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctctg 123
            ||| | ||||| |||||| |   ||| |||||||||||||| ||  | |||| |||||| 
Sbjct: 892  aacgcacgtgtccccatcatttgcactggtaacgatttctccaccttatacggtcctctc 951

                                                                        
Query: 124  atccgtgatggtcgtatggagaagttct--actgggctcccacccgtgacgaccgtatcg 181
            |||| |||||| ||||||||||||||||  |||||   || |||||||| ||||||||||
Sbjct: 952  atccttgatggacgtatggagaagttcttgactgg--cccgacccgtgaagaccgtatcg 1009

                   
Query: 182  gtgtctg 188
            |||||||
Sbjct: 1010 gtgtctg 1016

---

>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds
          Length = 1656

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Plus

                                                                       
Query: 34  cagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggt 93
           |||||||| || |||||||||||| | |||||| || | || |||||  | ||||| |||
Sbjct: 839 cagctccccggtatgtacaacaagcaagagaacgccagggtacccattattgtcactggt 898

                                                                       
Query: 94  aacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctac 153
           ||||| ||||| ||  | || |||||||| ||||||||||||||||||||||||||||||
Sbjct: 899 aacgacttctccacattgtatgctcctcttatccgtgatggtcgtatggagaagttctac 958

                
Query: 154 tgggc 158
           |||||
Sbjct: 959 tgggc 963

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 105/125 (84%)
 Strand = Plus / Plus

                                                                       
Query: 34  cagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggt 93
           |||||||| || |||||||||||| | |||||  || | || || ||  ||||||| |||
Sbjct: 98  cagctccccggtatgtacaacaagcaagagaatgccagggtccctattatcgtcactggt 157

                                                                       
Query: 94  aacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctac 153
           ||||||||||| ||  | || ||||| || ||||||||||||||||||||||||||||||
Sbjct: 158 aacgatttctccacattgtatgctccacttatccgtgatggtcgtatggagaagttctac 217

                
Query: 154 tgggc 158
           |||||
Sbjct: 218 tgggc 222



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 232 gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgc 281
           |||||||| || || | |||||| |||||||| || ||||||||||||||
Sbjct: 296 gtcaagattgttgataacttccctggacaatctatcgactttttcggtgc 345

---

>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete
           cds
          Length = 1674

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 105/125 (84%)
 Strand = Plus / Plus

                                                                       
Query: 34  cagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggt 93
           |||||||| || |||||||||||| | |||||  || | || || ||  ||||||| |||
Sbjct: 858 cagctccccggtatgtacaacaagcaagagaatgccagggtccctattatcgtcactggt 917

                                                                       
Query: 94  aacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctac 153
           ||||||||||| ||  | || ||||| || ||||||||||||||||||||||||||||||
Sbjct: 918 aacgatttctccacattgtatgctccacttatccgtgatggtcgtatggagaagttctac 977

                
Query: 154 tgggc 158
           |||||
Sbjct: 978 tgggc 982

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
           activase mRNA, complete cds
          Length = 1693

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 163/203 (80%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgatgaacatcgccgatgcccccaccaacgtgcagctccctggcatgtacaacaaggagg 61
           ||||||||||||||||   ||| |||||||| ||||| || ||  ||||||| || ||||
Sbjct: 730 tgatgaacatcgccgacaacccgaccaacgtccagctgcccggtgtgtacaagaacgagg 789

                                                                       
Query: 62  agaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcgacgctctacgctcctc 121
           ||| ||| || |||||||| ||   ||| || ||||| ||||| || || ||||| || |
Sbjct: 790 agatccctcgcgtgcccattgtgtgcacgggcaacgacttctccaccctgtacgcgcccc 849

                                                                       
Query: 122 tgatccgtgatggtcgtatggagaagttctactgggctcccacccgtgacgaccgtatcg 181
           ||||||| ||||| || |||||||||| |||||||   |||||||| || ||||| ||||
Sbjct: 850 tgatccgcgatggccgcatggagaagtactactggaaccccacccgcgaggaccgcatcg 909

                                  
Query: 182 gtgtctgcaagggtatcttccag 204
           | || |||| ||| |||||||||
Sbjct: 910 gcgtgtgcatgggcatcttccag 932



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 244  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
            ||||||||||| || || ||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 972  gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 1031

              
Query: 304  ga 305
            ||
Sbjct: 1032 ga 1033

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                       
Query: 415 aagctgctagagtacgggcacatgctcgtccaggagcaggacaatgtcaagcgtgtgcag 474
           |||||||||||||| ||  ||||||| |||||||||||||||||||| ||| | || || 
Sbjct: 3   aagctgctagagtatggaaacatgcttgtccaggagcaggacaatgtgaagagagttcaa 62

                                                                   
Query: 475 cttgctgacacctacatgagccaggcagctctgggtgatgctaaccaggatgcgat 530
           || || ||||| ||| ||||||| |||||||| || ||||| ||| ||||| ||||
Sbjct: 63  ctggcagacacgtacttgagccaagcagctcttggagatgcaaacgaggattcgat 118

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 126/155 (81%)
 Strand = Plus / Plus

                                                                        
Query: 25   accaacgtgcagctccctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtc 84
            ||||| |||||||| || |||||||| |||||||| || || ||| | || |||||| | 
Sbjct: 864  accaatgtgcagctaccaggcatgtataacaaggaagaaaatcccagagttcccatcata 923

                                                                        
Query: 85   gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
            || || |||||||| ||||| ||| | || || ||||| || ||||||||||| ||||| 
Sbjct: 924  gtaactggtaacgacttctcaacgttatatgcacctctcattcgtgatggtcggatggat 983

                                               
Query: 145  aagttctactgggctcccacccgtgacgaccgtat 179
            || |||||||||||||| || ||||| || |||||
Sbjct: 984  aaattctactgggctccaactcgtgaagatcgtat 1018



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Plus

                                                                        
Query: 241  gtcgacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtac 300
            |||||||||||||||||||| || || ||||| || |||||| || | ||||| || || 
Sbjct: 1080 gtcgacaccttcccaggacagtcaatagacttctttggtgctttgagagctcgagtttat 1139

                                  
Query: 301  gacgatgaggtgcgcaagtggg 322
            |||||||| ||| | |||||||
Sbjct: 1140 gacgatgaagtgagaaagtggg 1161

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           ||||| |||||||||||||| ||  | || || ||||| |||||||||||||||||||||
Sbjct: 926 gtcactggtaacgatttctccacattgtatgcacctcttatccgtgatggtcgtatggag 985

                         
Query: 145 aagttctactgggc 158
           || |||||||||||
Sbjct: 986 aaattctactgggc 999



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                  
Query: 232  gtcaagatcgtcgacaccttcccaggacaatccattgactttttcggtgctctg 285
            |||||||||||||| | |||||| |||||||| ||||| || ||||||||||||
Sbjct: 1073 gtcaagatcgtcgatagcttccctggacaatctattgatttcttcggtgctctg 1126

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 244  gacaccttcccaggacaatccattgactttttcggtgctctgcgtgctcgggtgtacgac 303
            ||||||||||| || || ||||||||||| ||||| || |||||||| || |||||||||
Sbjct: 2662 gacaccttccccggccagtccattgacttcttcggcgccctgcgtgcccgcgtgtacgac 2721

              
Query: 304  ga 305
            ||
Sbjct: 2722 ga 2723

---

>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene)
          Length = 678

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 95/117 (81%)
 Strand = Plus / Plus

                                                                       
Query: 40  cctggcatgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggtaacgat 99
           ||||| |||||||||||||| || || || ||||| || || || || || || || |||
Sbjct: 562 cctggaatgtacaacaaggaagaaaatcctcgtgttccaattgttgtgacaggaaatgat 621

                                                                    
Query: 100 ttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgg 156
           ||||| ||  | || |||||  |||| |||||||| |||||||||||||||||||||
Sbjct: 622 ttctcaactttgtatgctccattgattcgtgatgggcgtatggagaagttctactgg 678

---

>ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G73110 mRNA, complete
           cds
          Length = 1437

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           ||||| || ||||||||||| || || || ||||| ||||||||||| ||  | ||||||
Sbjct: 899 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 958

                       
Query: 145 aagttctactgg 156
           ||||||||||||
Sbjct: 959 aagttctactgg 970

---

>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence
          Length = 108028

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 103/128 (80%)
 Strand = Plus / Minus

                                                                        
Query: 46   atgtacaacaaggaggagaacccccgtgtgcccatcgtcgtcaccggtaacgatttctcg 105
            ||||||||||| || |||||  |||| || || ||| ||||||| || || || ||||| 
Sbjct: 7019 atgtacaacaaagaagagaatgcccgcgtccctatcatcgtcactggcaatgacttctct 6960

                                                                        
Query: 106  acgctctacgctcctctgatccgtgatggtcgtatggagaagttctactgggctcccacc 165
            ||| | || |||||| | || |||||||| |||||||| || ||||||||||| || || 
Sbjct: 6959 acgttgtatgctcctttaattcgtgatggacgtatggaaaaattctactgggcacctact 6900

                    
Query: 166  cgtgacga 173
            ||||||||
Sbjct: 6899 cgtgacga 6892

---

>gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds
          Length = 1299

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           ||||| || ||||||||||| || || || ||||| ||||||||||| ||  | ||||||
Sbjct: 865 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 924

                       
Query: 145 aagttctactgg 156
           ||||||||||||
Sbjct: 925 aagttctactgg 936

---

>gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds
          Length = 1437

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           ||||| || ||||||||||| || || || ||||| ||||||||||| ||  | ||||||
Sbjct: 899 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 958

                       
Query: 145 aagttctactgg 156
           ||||||||||||
Sbjct: 959 aagttctactgg 970

---

>emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS85ZG11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1496

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           ||||| || ||||||||||| || || || ||||| ||||||||||| ||  | ||||||
Sbjct: 873 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 932

                       
Query: 145 aagttctactgg 156
           ||||||||||||
Sbjct: 933 aagttctactgg 944

---

>dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown protein, complete
           cds, clone: RAFL21-28-D21
          Length = 1447

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
           ||||| || ||||||||||| || || || ||||| ||||||||||| ||  | ||||||
Sbjct: 886 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 945

                       
Query: 145 aagttctactgg 156
           ||||||||||||
Sbjct: 946 aagttctactgg 957

---

>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete
             sequence
          Length = 116944

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                         
Query: 85    gtcaccggtaacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggag 144
             ||||| || ||||||||||| || || || ||||| ||||||||||| ||  | ||||||
Sbjct: 97686 gtcacagggaacgatttctctacactgtatgctccactgatccgtgaaggaagaatggag 97627

                         
Query: 145   aagttctactgg 156
             ||||||||||||
Sbjct: 97626 aagttctactgg 97615

---

>emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB33ZF10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1426

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 94  aacgatttctcgacgctctacgctcctctgatccgtgatggtcgtatggagaagttctac 153
           ||||||||||| || || || ||||| ||||||||||| ||  | |||||||||||||||
Sbjct: 936 aacgatttctctacactgtatgctccactgatccgtgaaggaagaatggagaagttctac 995

              
Query: 154 tgg 156
           |||
Sbjct: 996 tgg 998

---

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 2      tgatgaacatcgccgatgcccccaccaacgtgcagct 38
              ||||||||||||||||   ||||||||||||||||||
Sbjct: 445683 tgatgaacatcgccgacaaccccaccaacgtgcagct 445647

---

>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence
          Length = 105218

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 115    gctcctctgatccgtgatggtcgtatggagaagttctactgggc 158
              |||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 103868 gctcctcttattcgtgacggtcgtatggagaaattctattgggc 103825

---

>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence
          Length = 163160

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 115   gctcctctgatccgtgatggtcgtatggagaagttctactgggc 158
             |||||||| || ||||| |||||||||||||| ||||| |||||
Sbjct: 82893 gctcctcttattcgtgacggtcgtatggagaaattctattgggc 82850

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 493   agccaggcagctctgggtgatg 514
             ||||||||||||||||||||||
Sbjct: 51254 agccaggcagctctgggtgatg 51275

---

>emb|AL137022.8| Human DNA sequence from clone RP11-344A7 on chromosome 9p21.2-22.3
             Contains the 5' end of a novel gene, a histone H3
             pseudogene, and a CpG island, complete sequence
          Length = 169854

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 568   acacacccaccatcttttgctgcat 592
             |||||| ||||||||||||||||||
Sbjct: 99490 acacacacaccatcttttgctgcat 99514

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 234  caagatcgtcgacaccttccc 254
            |||||||||||||||||||||
Sbjct: 3673 caagatcgtcgacaccttccc 3653

---

>emb|CR937045.1|PT025P03 Pan troglodytes chromosome 11 BAC PTB-025P03, complete sequence
          Length = 173795

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 568    acacacccaccatcttttgctgcat 592
              |||||| ||||||||||||||||||
Sbjct: 136567 acacacacaccatcttttgctgcat 136591

---

>ref|NM_076469.4| Caenorhabditis elegans Amyloid Precursor-Like family member (apl-1)
            (apl-1) mRNA, complete cds
          Length = 2739

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    gtgatgaacatcgccgatgcc 21
            |||||||||||||||||||||
Sbjct: 1897 gtgatgaacatcgccgatgcc 1877

---

>ref|NM_076470.2| Caenorhabditis elegans Amyloid Precursor-Like family member (apl-1)
            (apl-1) mRNA, complete cds
          Length = 2742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    gtgatgaacatcgccgatgcc 21
            |||||||||||||||||||||
Sbjct: 1898 gtgatgaacatcgccgatgcc 1878

---

>gb|U56966.2| Caenorhabditis elegans cosmid C42D8, complete sequence
          Length = 42802

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     gtgatgaacatcgccgatgcc 21
             |||||||||||||||||||||
Sbjct: 34317 gtgatgaacatcgccgatgcc 34337

---

>emb|BX818441.1|CNS0ACQX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL79ZC02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 593

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 61/73 (83%), Gaps = 1/73 (1%)
 Strand = Plus / Plus

                                                                       
Query: 85  gtcaccggtaacgatttctcgacgctctacgctc-ctctgatccgtgatggtcgtatgga 143
           ||||| || ||||||||||| || || || |||| | ||||||||||| ||  | |||||
Sbjct: 136 gtcacagggaacgatttctctacactgtatgctctcactgatccgtgaaggaagaatgga 195

                        
Query: 144 gaagttctactgg 156
           |||||||||||||
Sbjct: 196 gaagttctactgg 208

---

>gb|U00240.1|U00240 Caenorhabditis elegans beta-amyloid protein precursor (APL-1) mRNA
            complete cds
          Length = 2742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 1    gtgatgaacatcgccgatgcc 21
            |||||||||||||||||||||
Sbjct: 1883 gtgatgaacatcgccgatgcc 1863

---

>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence
          Length = 98713

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   ggtgtctgcaagggtatcttccag 204
             |||||||||||||||||| |||||
Sbjct: 67265 ggtgtctgcaagggtatcatccag 67288

---

>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   tgcataggaggaggtaaagg 607
             ||||||||||||||||||||
Sbjct: 46378 tgcataggaggaggtaaagg 46359

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  tgagccaggcagctctgggtgatg 514
            ||||||||||||||||||| ||||
Sbjct: 1565 tgagccaggcagctctgggcgatg 1542

---

>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 588  tgcataggaggaggtaaagg 607
            ||||||||||||||||||||
Sbjct: 1656 tgcataggaggaggtaaagg 1637

---

>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   tgcataggaggaggtaaagg 607
             ||||||||||||||||||||
Sbjct: 32964 tgcataggaggaggtaaagg 32945

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 464 agcgtgtgcagcttgctgac 483
           ||||||||||||||||||||
Sbjct: 223 agcgtgtgcagcttgctgac 242

---

>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B
          Length = 1010

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 agtgacgagtctgtcgtcaa 236
           ||||||||||||||||||||
Sbjct: 308 agtgacgagtctgtcgtcaa 289

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  tgagccaggcagctctgggtgatg 514
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 445    caggagcaggacaatgtcaa 464
              ||||||||||||||||||||
Sbjct: 126419 caggagcaggacaatgtcaa 126438

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  tgagccaggcagctctgggtgatg 514
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912

---

>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 588   tgcataggaggaggtaaagg 607
             ||||||||||||||||||||
Sbjct: 34681 tgcataggaggaggtaaagg 34662

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  tgagccaggcagctctgggtgatg 514
            ||||||||||||||||||| ||||
Sbjct: 1659 tgagccaggcagctctgggcgatg 1636

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  tgagccaggcagctctgggtgatg 514
            ||||||||||||||||||| ||||
Sbjct: 2026 tgagccaggcagctctgggcgatg 2003

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  tgagccaggcagctctgggtgatg 514
            ||||||||||||||||||| ||||
Sbjct: 1935 tgagccaggcagctctgggcgatg 1912

---

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 166     cgtgacgaccgtatcggtgt 185
               ||||||||||||||||||||
Sbjct: 3056327 cgtgacgaccgtatcggtgt 3056308

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 445    caggagcaggacaatgtcaa 464
              ||||||||||||||||||||
Sbjct: 106979 caggagcaggacaatgtcaa 106960

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 491  tgagccaggcagctctgggtgatg 514
            ||||||||||||||||||| ||||
Sbjct: 1619 tgagccaggcagctctgggcgatg 1596

---

>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 595 gaggaggtaaaggagcacagcaag 618
           |||||||||||||||| |||||||
Sbjct: 625 gaggaggtaaaggagcccagcaag 648

---

>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   tgcataggaggaggtaaagg 607
             ||||||||||||||||||||
Sbjct: 27736 tgcataggaggaggtaaagg 27755

---

>gb|AC008039.1|AC008039 Homo sapiens clone SCb-391H5 from 7q31, complete sequence
          Length = 197346

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 571  cacccaccatcttttgctgc 590
            ||||||||||||||||||||
Sbjct: 7320 cacccaccatcttttgctgc 7339

---

>gb|AC006529.1|AC006529 Homo sapiens clone SCb-20L24 from 7q31, complete sequence
          Length = 178069

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 571    cacccaccatcttttgctgc 590
              ||||||||||||||||||||
Sbjct: 166299 cacccaccatcttttgctgc 166318

---

>gb|AY845069.1| Olea europaea clone SRAP-12 SRAP marker genomic sequence
          Length = 262

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 34  cagctccctggcatgtacaacaaggaggagaa 65
           ||||||||||| |||||||||||  |||||||
Sbjct: 157 cagctccctggtatgtacaacaaacaggagaa 188

---

>gb|AC154579.3| Mus musculus BAC clone RP23-376B1 from chromosome 17, complete sequence
          Length = 193686

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 583   tttgctgcataggaggaggt 602
             ||||||||||||||||||||
Sbjct: 30784 tttgctgcataggaggaggt 30803


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,790,069
Number of Sequences: 3902068
Number of extensions: 3790069
Number of successful extensions: 64665
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64269
Number of HSP's gapped (non-prelim): 354
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---