| Clone Name | baal39d08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F17, full insert sequence Length = 3847 Score = 226 bits (114), Expect = 3e-56 Identities = 237/278 (85%) Strand = Plus / Plus Query: 13 tatacttttgcaaagtcaaatgtgatcaaaaatgctgcacagaactatctgttggattct 72 ||||| ||||||||||| || |||||| ||||||||||| |||||||||||||||| | Sbjct: 2662 tatacatttgcaaagtcgaacttgatcagaaatgctgcacgaaactatctgttggattat 2721 Query: 73 gggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactcttgattta 132 |||||| | |||||||||||||| | ||| |||||||| || |||||| ||||||||||| Sbjct: 2722 gggattcactggggagcagcaccagcagtaaagggcattcgagatgcagctcttgattta 2781 Query: 133 ctgcacatccttgtagctgtacatgccgaggtatactcgggtgctaggcctttgttggag 192 ||||||||||||||||||||||| || ||||| ||||| |||||||||||| || |||| Sbjct: 2782 ctgcacatccttgtagctgtacacgcagaggtctactccggtgctaggcctctgctggaa 2841 Query: 193 aaaacgatgaaaattttggtcgagggtttggtcgacatatttcttagccttttttatgag 252 || |||||| ||||||||| ||||||||| | || || || || || |||| ||||| Sbjct: 2842 aaggcgatgacaattttggtagagggtttgattgatatcttcctcagtattttccatgag 2901 Query: 253 aacaaggccaaagatctcagaatgttggatgcaaatgg 290 || ||| ||||||| |||||||||||||| |||||||| Sbjct: 2902 aataagaccaaagaactcagaatgttggacgcaaatgg 2939
>gb|AY109956.1| Zea mays CL7164_1 mRNA sequence Length = 1059 Score = 168 bits (85), Expect = 6e-39 Identities = 124/137 (90%) Strand = Plus / Plus Query: 103 aagggcatacgggatgcaactcttgatttactgcacatccttgtagctgtacatgccgag 162 |||||||| || |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 16 aagggcattcgagatgcaactcttgacttactgcacatccttgtagcagtacatgcagag 75 Query: 163 gtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtttg 222 |||||||| || ||| ||||| |||||||||| || |||||||||||||| ||||||||| Sbjct: 76 gtatactctggcgctcggcctctgttggagaagacaatgaaaattttggttgagggtttg 135 Query: 223 gtcgacatatttcttag 239 |||||||| |||||||| Sbjct: 136 gtcgacatctttcttag 152
>ref|XM_472477.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3354 Score = 85.7 bits (43), Expect = 7e-14 Identities = 73/83 (87%) Strand = Plus / Plus Query: 13 tatacttttgcaaagtcaaatgtgatcaaaaatgctgcacagaactatctgttggattct 72 ||||| ||||||||||| || |||||| ||||||||||| |||||||||||||||| | Sbjct: 2593 tatacatttgcaaagtcgaacttgatcagaaatgctgcacgaaactatctgttggattat 2652 Query: 73 gggattaattggggagcagcacc 95 |||||| | |||||||||||||| Sbjct: 2653 gggattcactggggagcagcacc 2675 Score = 75.8 bits (38), Expect = 7e-11 Identities = 107/130 (82%) Strand = Plus / Plus Query: 161 aggtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtt 220 |||| ||||| |||||||||||| || |||| || |||||| ||||||||| ||||||| Sbjct: 2684 aggtctactccggtgctaggcctctgctggaaaaggcgatgacaattttggtagagggtt 2743 Query: 221 tggtcgacatatttcttagccttttttatgagaacaaggccaaagatctcagaatgttgg 280 || | || || || || || |||| ||||||| ||| ||||||| ||||||||||||| Sbjct: 2744 tgattgatatcttcctcagtattttccatgagaataagaccaaagaactcagaatgttgg 2803 Query: 281 atgcaaatgg 290 | |||||||| Sbjct: 2804 acgcaaatgg 2813
>emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23, complete sequence Length = 148736 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 104 agggcatacgggatgcaactcttgatttactgcacatccttgtagctgtacatgccgagg 163 ||||||| || |||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct: 126439 agggcattcgagatgcagctcttgatttactgcacatccttgtagctgtacacgcagagg 126498 Query: 164 t 164 | Sbjct: 126499 t 126499 Score = 75.8 bits (38), Expect = 7e-11 Identities = 107/130 (82%) Strand = Plus / Plus Query: 161 aggtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtt 220 |||| ||||| |||||||||||| || |||| || |||||| ||||||||| ||||||| Sbjct: 126645 aggtctactccggtgctaggcctctgctggaaaaggcgatgacaattttggtagagggtt 126704 Query: 221 tggtcgacatatttcttagccttttttatgagaacaaggccaaagatctcagaatgttgg 280 || | || || || || || |||| ||||||| ||| ||||||| ||||||||||||| Sbjct: 126705 tgattgatatcttcctcagtattttccatgagaataagaccaaagaactcagaatgttgg 126764 Query: 281 atgcaaatgg 290 | |||||||| Sbjct: 126765 acgcaaatgg 126774 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 35 tgatcaaaaatgctgcacagaactatctgttggattctgggattaattggggagcagcac 94 |||||| ||||||||||| |||||||||||||||| ||||||| | ||||||||||||| Sbjct: 126030 tgatcagaaatgctgcacgaaactatctgttggattatgggattcactggggagcagcac 126089 Query: 95 c 95 | Sbjct: 126090 c 126090
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 81.8 bits (41), Expect = 1e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 104 agggcatacgggatgcaactcttgatttactgcacatccttgtagctgtacatgccgagg 163 ||||||| || |||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct: 20879614 agggcattcgagatgcagctcttgatttactgcacatccttgtagctgtacacgcagagg 20879673 Query: 164 t 164 | Sbjct: 20879674 t 20879674 Score = 75.8 bits (38), Expect = 7e-11 Identities = 107/130 (82%) Strand = Plus / Plus Query: 161 aggtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtt 220 |||| ||||| |||||||||||| || |||| || |||||| ||||||||| ||||||| Sbjct: 20879820 aggtctactccggtgctaggcctctgctggaaaaggcgatgacaattttggtagagggtt 20879879 Query: 221 tggtcgacatatttcttagccttttttatgagaacaaggccaaagatctcagaatgttgg 280 || | || || || || || |||| ||||||| ||| ||||||| ||||||||||||| Sbjct: 20879880 tgattgatatcttcctcagtattttccatgagaataagaccaaagaactcagaatgttgg 20879939 Query: 281 atgcaaatgg 290 | |||||||| Sbjct: 20879940 acgcaaatgg 20879949 Score = 73.8 bits (37), Expect = 3e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 35 tgatcaaaaatgctgcacagaactatctgttggattctgggattaattggggagcagcac 94 |||||| ||||||||||| |||||||||||||||| ||||||| | ||||||||||||| Sbjct: 20879205 tgatcagaaatgctgcacgaaactatctgttggattatgggattcactggggagcagcac 20879264 Query: 95 c 95 | Sbjct: 20879265 c 20879265
>gb|AY739093.1| Takifugu rubripes frMUT, frGPR136L1, and frGPR136L2 genes, complete sequence; frRUNX2 (frRUNX2) gene, complete cds; and frCLIC5, frENPP5, frPHIP, frIRAK1BP1, and frTBX18 genes, complete sequence Length = 235024 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 262 aaagatctcagaatgttggatg 283 |||||||||||||||||||||| Sbjct: 79363 aaagatctcagaatgttggatg 79342
>gb|AF477382.1|AF477382S1 Takifugu rubripes transcription factor runx2 (runx2) gene, 5' flanking region Length = 58521 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 262 aaagatctcagaatgttggatg 283 |||||||||||||||||||||| Sbjct: 49633 aaagatctcagaatgttggatg 49612
>gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence Length = 39456 Score = 42.1 bits (21), Expect = 0.96 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 cttgtagctgtacatgccgaggtatactc 170 ||||||||||| ||||| ||||||||||| Sbjct: 6730 cttgtagctgtccatgcagaggtatactc 6758
>gb|AC130815.4| Mus musculus BAC clone RP23-19E7 from 16, complete sequence Length = 195188 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 atatttcttagccttttttat 249 ||||||||||||||||||||| Sbjct: 121368 atatttcttagccttttttat 121388
>ref|NM_106336.3| Arabidopsis thaliana unknown protein AT1G76850 mRNA, complete cds Length = 3552 Score = 40.1 bits (20), Expect = 3.8 Identities = 80/100 (80%) Strand = Plus / Plus Query: 65 tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124 |||| ||||| ||| | |||||| |||||||| |||||| |||||||| ||||| || Sbjct: 2659 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2718 Query: 125 ttgatttactgcacatccttgtagctgtacatgccgaggt 164 |||| | |||||| ||||||||||| ||||| ||||| Sbjct: 2719 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2758
>gb|AY190956.1| Drosophila virilis clone DVIF01_06_H02 (D1438) genomic sequence Length = 46427 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aaaatgctgcacagaactat 60 |||||||||||||||||||| Sbjct: 36267 aaaatgctgcacagaactat 36286
>gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, complete sequence Length = 184989 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 atatttcttagcctttttta 248 |||||||||||||||||||| Sbjct: 85500 atatttcttagcctttttta 85481
>emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in linkage group 19, complete sequence Length = 187155 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tggagaaaacgatgaaaatt 207 |||||||||||||||||||| Sbjct: 80085 tggagaaaacgatgaaaatt 80104
>gb|AF479278.1| Arabidopsis thaliana SEC5a (SEC5a) mRNA, complete cds Length = 3571 Score = 40.1 bits (20), Expect = 3.8 Identities = 80/100 (80%) Strand = Plus / Plus Query: 65 tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124 |||| ||||| ||| | |||||| |||||||| |||||| |||||||| ||||| || Sbjct: 2659 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2718 Query: 125 ttgatttactgcacatccttgtagctgtacatgccgaggt 164 |||| | |||||| ||||||||||| ||||| ||||| Sbjct: 2719 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2758
>ref|XM_693771.1| PREDICTED: Danio rerio similar to serine/threonine-protein kinase pim-3 (LOC570301), mRNA Length = 2589 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tggagaaaacgatgaaaatt 207 |||||||||||||||||||| Sbjct: 650 tggagaaaacgatgaaaatt 669
>gb|AC159909.8| Mus musculus 10 BAC RP23-312M21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184546 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 ggccaaagatctcagaatgt 277 |||||||||||||||||||| Sbjct: 50021 ggccaaagatctcagaatgt 50040
>gb|AC013751.6|AC013751 Homo sapiens chromosome , clone RP11-298P6, complete sequence Length = 205816 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 gcaaagtcaaatgtgatcaaaaat 45 ||||||||||||||||| |||||| Sbjct: 88275 gcaaagtcaaatgtgataaaaaat 88298
>gb|BT005978.1| Arabidopsis thaliana At1g76850 gene, complete cds Length = 3273 Score = 40.1 bits (20), Expect = 3.8 Identities = 80/100 (80%) Strand = Plus / Plus Query: 65 tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124 |||| ||||| ||| | |||||| |||||||| |||||| |||||||| ||||| || Sbjct: 2597 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2656 Query: 125 ttgatttactgcacatccttgtagctgtacatgccgaggt 164 |||| | |||||| ||||||||||| ||||| ||||| Sbjct: 2657 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2696
>gb|AC153944.3| Mus musculus 10 BAC RP24-292A13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 139203 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ggccaaagatctcagaatgt 277 |||||||||||||||||||| Sbjct: 31230 ggccaaagatctcagaatgt 31211
>dbj|AK118540.1| Arabidopsis thaliana At1g76850 mRNA for unknown protein, complete cds, clone: RAFL19-76-N21 Length = 3445 Score = 40.1 bits (20), Expect = 3.8 Identities = 80/100 (80%) Strand = Plus / Plus Query: 65 tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124 |||| ||||| ||| | |||||| |||||||| |||||| |||||||| ||||| || Sbjct: 2650 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2709 Query: 125 ttgatttactgcacatccttgtagctgtacatgccgaggt 164 |||| | |||||| ||||||||||| ||||| ||||| Sbjct: 2710 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2749
>dbj|AB115078.1| Misgurnus anguillicaudatus D202-2 gene for Main Olfactory Receptor, complete cds Length = 975 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ctgttggattctgggattaattgg 84 ||||||||||||||| |||||||| Sbjct: 438 ctgttggattctgggtttaattgg 461
>gb|AC104153.2| Papio anubis clone RP41-431I4, complete sequence Length = 191465 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 caaagtcaaatgtgatcaaa 42 |||||||||||||||||||| Sbjct: 119349 caaagtcaaatgtgatcaaa 119330
>emb|AL954645.7| Zebrafish DNA sequence from clone CH211-234B4, complete sequence Length = 182141 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tcaaatgtgatcaaaaatgc 47 |||||||||||||||||||| Sbjct: 91831 tcaaatgtgatcaaaaatgc 91812
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 atgagaacaaggccaaagat 267 |||||||||||||||||||| Sbjct: 502586 atgagaacaaggccaaagat 502567
>emb|AL645806.9| Mouse DNA sequence from clone CT7-316H20 on chromosome 3, complete sequence Length = 129775 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 43 aatgctgcacagaactatctgttg 66 |||||||||||||| ||||||||| Sbjct: 35684 aatgctgcacagaattatctgttg 35707 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,702,028 Number of Sequences: 3902068 Number of extensions: 2702028 Number of successful extensions: 50030 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 49961 Number of HSP's gapped (non-prelim): 69 length of query: 290 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 268 effective length of database: 17,147,199,772 effective search space: 4595449538896 effective search space used: 4595449538896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)