ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal39d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK066958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 3e-56
2gb|AY109956.1| Zea mays CL7164_1 mRNA sequence 168 6e-39
3ref|XM_472477.1| Oryza sativa (japonica cultivar-group), predic... 86 7e-14
4emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4,... 82 1e-12
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
6gb|AY739093.1| Takifugu rubripes frMUT, frGPR136L1, and frGPR136... 44 0.24
7gb|AF477382.1|AF477382S1 Takifugu rubripes transcription factor ... 44 0.24
8gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O... 42 0.96
9gb|AC130815.4| Mus musculus BAC clone RP23-19E7 from 16, complet... 42 0.96
10ref|NM_106336.3| Arabidopsis thaliana unknown protein AT1G76850 ... 40 3.8
11gb|AY190956.1| Drosophila virilis clone DVIF01_06_H02 (D1438) ge... 40 3.8
12gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, compl... 40 3.8
13emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in... 40 3.8
14gb|AF479278.1| Arabidopsis thaliana SEC5a (SEC5a) mRNA, complete... 40 3.8
15ref|XM_693771.1| PREDICTED: Danio rerio similar to serine/threon... 40 3.8
16gb|AC159909.8| Mus musculus 10 BAC RP23-312M21 (Roswell Park Can... 40 3.8
17gb|AC013751.6|AC013751 Homo sapiens chromosome , clone RP11-298P... 40 3.8
18gb|BT005978.1| Arabidopsis thaliana At1g76850 gene, complete cds 40 3.8
19gb|AC153944.3| Mus musculus 10 BAC RP24-292A13 (Roswell Park Can... 40 3.8
20dbj|AK118540.1| Arabidopsis thaliana At1g76850 mRNA for unknown ... 40 3.8
21dbj|AB115078.1| Misgurnus anguillicaudatus D202-2 gene for Main ... 40 3.8
22gb|AC104153.2| Papio anubis clone RP41-431I4, complete sequence 40 3.8
23emb|AL954645.7| Zebrafish DNA sequence from clone CH211-234B4, c... 40 3.8
24emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 3.8
25emb|AL645806.9| Mouse DNA sequence from clone CT7-316H20 on chro... 40 3.8

>dbj|AK066958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091F17, full
            insert sequence
          Length = 3847

 Score =  226 bits (114), Expect = 3e-56
 Identities = 237/278 (85%)
 Strand = Plus / Plus

                                                                        
Query: 13   tatacttttgcaaagtcaaatgtgatcaaaaatgctgcacagaactatctgttggattct 72
            ||||| ||||||||||| ||  |||||| |||||||||||  |||||||||||||||| |
Sbjct: 2662 tatacatttgcaaagtcgaacttgatcagaaatgctgcacgaaactatctgttggattat 2721

                                                                        
Query: 73   gggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactcttgattta 132
            |||||| | |||||||||||||| | ||| |||||||| || |||||| |||||||||||
Sbjct: 2722 gggattcactggggagcagcaccagcagtaaagggcattcgagatgcagctcttgattta 2781

                                                                        
Query: 133  ctgcacatccttgtagctgtacatgccgaggtatactcgggtgctaggcctttgttggag 192
            ||||||||||||||||||||||| || ||||| ||||| |||||||||||| || |||| 
Sbjct: 2782 ctgcacatccttgtagctgtacacgcagaggtctactccggtgctaggcctctgctggaa 2841

                                                                        
Query: 193  aaaacgatgaaaattttggtcgagggtttggtcgacatatttcttagccttttttatgag 252
            ||  |||||| ||||||||| ||||||||| | || || || || ||  ||||  |||||
Sbjct: 2842 aaggcgatgacaattttggtagagggtttgattgatatcttcctcagtattttccatgag 2901

                                                  
Query: 253  aacaaggccaaagatctcagaatgttggatgcaaatgg 290
            || ||| ||||||| |||||||||||||| ||||||||
Sbjct: 2902 aataagaccaaagaactcagaatgttggacgcaaatgg 2939



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>gb|AY109956.1| Zea mays CL7164_1 mRNA sequence
          Length = 1059

 Score =  168 bits (85), Expect = 6e-39
 Identities = 124/137 (90%)
 Strand = Plus / Plus

                                                                       
Query: 103 aagggcatacgggatgcaactcttgatttactgcacatccttgtagctgtacatgccgag 162
           |||||||| || |||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct: 16  aagggcattcgagatgcaactcttgacttactgcacatccttgtagcagtacatgcagag 75

                                                                       
Query: 163 gtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtttg 222
           |||||||| || ||| ||||| |||||||||| || |||||||||||||| |||||||||
Sbjct: 76  gtatactctggcgctcggcctctgttggagaagacaatgaaaattttggttgagggtttg 135

                            
Query: 223 gtcgacatatttcttag 239
           |||||||| ||||||||
Sbjct: 136 gtcgacatctttcttag 152



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>ref|XM_472477.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3354

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 73/83 (87%)
 Strand = Plus / Plus

                                                                        
Query: 13   tatacttttgcaaagtcaaatgtgatcaaaaatgctgcacagaactatctgttggattct 72
            ||||| ||||||||||| ||  |||||| |||||||||||  |||||||||||||||| |
Sbjct: 2593 tatacatttgcaaagtcgaacttgatcagaaatgctgcacgaaactatctgttggattat 2652

                                   
Query: 73   gggattaattggggagcagcacc 95
            |||||| | ||||||||||||||
Sbjct: 2653 gggattcactggggagcagcacc 2675



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 107/130 (82%)
 Strand = Plus / Plus

                                                                        
Query: 161  aggtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtt 220
            |||| ||||| |||||||||||| || |||| ||  |||||| ||||||||| |||||||
Sbjct: 2684 aggtctactccggtgctaggcctctgctggaaaaggcgatgacaattttggtagagggtt 2743

                                                                        
Query: 221  tggtcgacatatttcttagccttttttatgagaacaaggccaaagatctcagaatgttgg 280
            || | || || || || ||  ||||  ||||||| ||| ||||||| |||||||||||||
Sbjct: 2744 tgattgatatcttcctcagtattttccatgagaataagaccaaagaactcagaatgttgg 2803

                      
Query: 281  atgcaaatgg 290
            | ||||||||
Sbjct: 2804 acgcaaatgg 2813



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>emb|AL662944.3|OSJN00134 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0028I23,
              complete sequence
          Length = 148736

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                          
Query: 104    agggcatacgggatgcaactcttgatttactgcacatccttgtagctgtacatgccgagg 163
              ||||||| || |||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct: 126439 agggcattcgagatgcagctcttgatttactgcacatccttgtagctgtacacgcagagg 126498

               
Query: 164    t 164
              |
Sbjct: 126499 t 126499



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 107/130 (82%)
 Strand = Plus / Plus

                                                                          
Query: 161    aggtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtt 220
              |||| ||||| |||||||||||| || |||| ||  |||||| ||||||||| |||||||
Sbjct: 126645 aggtctactccggtgctaggcctctgctggaaaaggcgatgacaattttggtagagggtt 126704

                                                                          
Query: 221    tggtcgacatatttcttagccttttttatgagaacaaggccaaagatctcagaatgttgg 280
              || | || || || || ||  ||||  ||||||| ||| ||||||| |||||||||||||
Sbjct: 126705 tgattgatatcttcctcagtattttccatgagaataagaccaaagaactcagaatgttgg 126764

                        
Query: 281    atgcaaatgg 290
              | ||||||||
Sbjct: 126765 acgcaaatgg 126774



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                          
Query: 35     tgatcaaaaatgctgcacagaactatctgttggattctgggattaattggggagcagcac 94
              |||||| |||||||||||  |||||||||||||||| ||||||| | |||||||||||||
Sbjct: 126030 tgatcagaaatgctgcacgaaactatctgttggattatgggattcactggggagcagcac 126089

               
Query: 95     c 95
              |
Sbjct: 126090 c 126090



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 104      agggcatacgggatgcaactcttgatttactgcacatccttgtagctgtacatgccgagg 163
                ||||||| || |||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct: 20879614 agggcattcgagatgcagctcttgatttactgcacatccttgtagctgtacacgcagagg 20879673

                 
Query: 164      t 164
                |
Sbjct: 20879674 t 20879674



 Score = 75.8 bits (38), Expect = 7e-11
 Identities = 107/130 (82%)
 Strand = Plus / Plus

                                                                            
Query: 161      aggtatactcgggtgctaggcctttgttggagaaaacgatgaaaattttggtcgagggtt 220
                |||| ||||| |||||||||||| || |||| ||  |||||| ||||||||| |||||||
Sbjct: 20879820 aggtctactccggtgctaggcctctgctggaaaaggcgatgacaattttggtagagggtt 20879879

                                                                            
Query: 221      tggtcgacatatttcttagccttttttatgagaacaaggccaaagatctcagaatgttgg 280
                || | || || || || ||  ||||  ||||||| ||| ||||||| |||||||||||||
Sbjct: 20879880 tgattgatatcttcctcagtattttccatgagaataagaccaaagaactcagaatgttgg 20879939

                          
Query: 281      atgcaaatgg 290
                | ||||||||
Sbjct: 20879940 acgcaaatgg 20879949



 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                            
Query: 35       tgatcaaaaatgctgcacagaactatctgttggattctgggattaattggggagcagcac 94
                |||||| |||||||||||  |||||||||||||||| ||||||| | |||||||||||||
Sbjct: 20879205 tgatcagaaatgctgcacgaaactatctgttggattatgggattcactggggagcagcac 20879264

                 
Query: 95       c 95
                |
Sbjct: 20879265 c 20879265



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>gb|AY739093.1| Takifugu rubripes frMUT, frGPR136L1, and frGPR136L2 genes, complete
             sequence; frRUNX2 (frRUNX2) gene, complete cds; and
             frCLIC5, frENPP5, frPHIP, frIRAK1BP1, and frTBX18 genes,
             complete sequence
          Length = 235024

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 262   aaagatctcagaatgttggatg 283
             ||||||||||||||||||||||
Sbjct: 79363 aaagatctcagaatgttggatg 79342



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>gb|AF477382.1|AF477382S1 Takifugu rubripes transcription factor runx2 (runx2) gene, 5' flanking
             region
          Length = 58521

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 262   aaagatctcagaatgttggatg 283
             ||||||||||||||||||||||
Sbjct: 49633 aaagatctcagaatgttggatg 49612



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>gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence,
            complete sequence
          Length = 39456

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 142  cttgtagctgtacatgccgaggtatactc 170
            ||||||||||| ||||| |||||||||||
Sbjct: 6730 cttgtagctgtccatgcagaggtatactc 6758



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>gb|AC130815.4| Mus musculus BAC clone RP23-19E7 from 16, complete sequence
          Length = 195188

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 229    atatttcttagccttttttat 249
              |||||||||||||||||||||
Sbjct: 121368 atatttcttagccttttttat 121388



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>ref|NM_106336.3| Arabidopsis thaliana unknown protein AT1G76850 mRNA, complete cds
          Length = 3552

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                        
Query: 65   tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124
            |||| ||||| ||| | |||||| ||||||||  |||||| |||||||| |||||  || 
Sbjct: 2659 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2718

                                                    
Query: 125  ttgatttactgcacatccttgtagctgtacatgccgaggt 164
            ||||  |  ||||||  ||||||||||| ||||| |||||
Sbjct: 2719 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2758



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>gb|AY190956.1| Drosophila virilis clone DVIF01_06_H02 (D1438) genomic sequence
          Length = 46427

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aaaatgctgcacagaactat 60
             ||||||||||||||||||||
Sbjct: 36267 aaaatgctgcacagaactat 36286



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>gb|AC131652.2| Mus musculus BAC clone RP23-216A20 from 16, complete sequence
          Length = 184989

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   atatttcttagcctttttta 248
             ||||||||||||||||||||
Sbjct: 85500 atatttcttagcctttttta 85481



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>emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in linkage group 19,
             complete sequence
          Length = 187155

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tggagaaaacgatgaaaatt 207
             ||||||||||||||||||||
Sbjct: 80085 tggagaaaacgatgaaaatt 80104



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>gb|AF479278.1| Arabidopsis thaliana SEC5a (SEC5a) mRNA, complete cds
          Length = 3571

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                        
Query: 65   tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124
            |||| ||||| ||| | |||||| ||||||||  |||||| |||||||| |||||  || 
Sbjct: 2659 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2718

                                                    
Query: 125  ttgatttactgcacatccttgtagctgtacatgccgaggt 164
            ||||  |  ||||||  ||||||||||| ||||| |||||
Sbjct: 2719 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2758



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>ref|XM_693771.1| PREDICTED: Danio rerio similar to serine/threonine-protein kinase
           pim-3 (LOC570301), mRNA
          Length = 2589

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tggagaaaacgatgaaaatt 207
           ||||||||||||||||||||
Sbjct: 650 tggagaaaacgatgaaaatt 669



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>gb|AC159909.8| Mus musculus 10 BAC RP23-312M21 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 184546

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   ggccaaagatctcagaatgt 277
             ||||||||||||||||||||
Sbjct: 50021 ggccaaagatctcagaatgt 50040



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>gb|AC013751.6|AC013751 Homo sapiens chromosome , clone RP11-298P6, complete sequence
          Length = 205816

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    gcaaagtcaaatgtgatcaaaaat 45
             ||||||||||||||||| ||||||
Sbjct: 88275 gcaaagtcaaatgtgataaaaaat 88298



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>gb|BT005978.1| Arabidopsis thaliana At1g76850 gene, complete cds
          Length = 3273

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                        
Query: 65   tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124
            |||| ||||| ||| | |||||| ||||||||  |||||| |||||||| |||||  || 
Sbjct: 2597 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2656

                                                    
Query: 125  ttgatttactgcacatccttgtagctgtacatgccgaggt 164
            ||||  |  ||||||  ||||||||||| ||||| |||||
Sbjct: 2657 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2696



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>gb|AC153944.3| Mus musculus 10 BAC RP24-292A13 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 139203

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 258   ggccaaagatctcagaatgt 277
             ||||||||||||||||||||
Sbjct: 31230 ggccaaagatctcagaatgt 31211



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>dbj|AK118540.1| Arabidopsis thaliana At1g76850 mRNA for unknown protein, complete
            cds, clone: RAFL19-76-N21
          Length = 3445

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 80/100 (80%)
 Strand = Plus / Plus

                                                                        
Query: 65   tggattctgggattaattggggagcagcacctgtagtgaagggcatacgggatgcaactc 124
            |||| ||||| ||| | |||||| ||||||||  |||||| |||||||| |||||  || 
Sbjct: 2650 tggactctggtattcaatggggatcagcacctcaagtgaaaggcatacgagatgctgctg 2709

                                                    
Query: 125  ttgatttactgcacatccttgtagctgtacatgccgaggt 164
            ||||  |  ||||||  ||||||||||| ||||| |||||
Sbjct: 2710 ttgagctgttgcacactcttgtagctgtccatgcagaggt 2749



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>dbj|AB115078.1| Misgurnus anguillicaudatus D202-2 gene for Main Olfactory Receptor,
           complete cds
          Length = 975

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 61  ctgttggattctgggattaattgg 84
           ||||||||||||||| ||||||||
Sbjct: 438 ctgttggattctgggtttaattgg 461



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>gb|AC104153.2| Papio anubis clone RP41-431I4, complete sequence
          Length = 191465

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     caaagtcaaatgtgatcaaa 42
              ||||||||||||||||||||
Sbjct: 119349 caaagtcaaatgtgatcaaa 119330



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>emb|AL954645.7| Zebrafish DNA sequence from clone CH211-234B4, complete sequence
          Length = 182141

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tcaaatgtgatcaaaaatgc 47
             ||||||||||||||||||||
Sbjct: 91831 tcaaatgtgatcaaaaatgc 91812



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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    atgagaacaaggccaaagat 267
              ||||||||||||||||||||
Sbjct: 502586 atgagaacaaggccaaagat 502567



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>emb|AL645806.9| Mouse DNA sequence from clone CT7-316H20 on chromosome 3, complete
             sequence
          Length = 129775

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    aatgctgcacagaactatctgttg 66
             |||||||||||||| |||||||||
Sbjct: 35684 aatgctgcacagaattatctgttg 35707


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,702,028
Number of Sequences: 3902068
Number of extensions: 2702028
Number of successful extensions: 50030
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 49961
Number of HSP's gapped (non-prelim): 69
length of query: 290
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 268
effective length of database: 17,147,199,772
effective search space: 4595449538896
effective search space used: 4595449538896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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