ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39c24 |
|---|---|
| Clone Library Name | barley_pub |
>VATC_ARATH (Q9SDS7) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 375 Score = 204 bits (520), Expect = 6e-53 Identities = 96/132 (72%), Positives = 112/132 (84%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 EKGFQ+RDFE S EAQE+RKQEL KL+QDQE +R+SLLQWCY SY EVFSSWMHF AVR Sbjct: 242 EKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRT 301 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSEDDVGMAAGLGGE 363 F ESI+RYGLP FL+ VL+P+ KSEKKVR+ILE LC +TNS YW+SE+D G AGL G+ Sbjct: 302 FAESIMRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWKSEEDAGAMAGLAGD 361 Query: 364 TESHPYVSFTIN 399 +E+HPYVSFTIN Sbjct: 362 SETHPYVSFTIN 373
>VATC_HORVU (Q9SCB9) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 354 Score = 99.4 bits (246), Expect(2) = 1e-37 Identities = 56/71 (78%), Positives = 58/71 (81%), Gaps = 2/71 (2%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTS-LLQWCYASYSEVFSSWMHF-SAV 177 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTS + + VFSSW F SAV Sbjct: 247 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSPIAMGAMLATVRVFSSWDAFSSAV 306 Query: 178 RVFVESILRYG 210 RVFVESILRYG Sbjct: 307 RVFVESILRYG 317 Score = 75.9 bits (185), Expect(2) = 1e-37 Identities = 37/38 (97%), Positives = 37/38 (97%) Frame = +3 Query: 210 SACTVPVCCPSTIYKEREKSKEHLGRAMRQYQQQLLEI 323 SACTVPVCCPSTIYKEREKSKEHLGRAMRQY QQLLEI Sbjct: 318 SACTVPVCCPSTIYKEREKSKEHLGRAMRQY-QQLLEI 354
>VATC_MANSE (Q9U5N1) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 385 Score = 99.8 bits (247), Expect = 3e-21 Identities = 52/136 (38%), Positives = 84/136 (61%), Gaps = 4/136 (2%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 E+ F +R+F Y+ + K E+ KLL D++ L++W ++SE F +W+H A+RV Sbjct: 242 ERKFVVREFAYNEADLVAGKNEITKLLTDKKKQFGPLVRWLKVNFSECFCAWIHVKALRV 301 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSS---YWRSEDDVGMAAGL 354 FVES+LRYGLP F + +L PS +S +++R+ L L + + S + ++ D AGL Sbjct: 302 FVESVLRYGLPVNFQAALLVPSRRSARRLRDTLHALYAHLDHSAHHHANAQQDSVELAGL 361 Query: 355 G-GETESHPYVSFTIN 399 G G++E +PYV + IN Sbjct: 362 GFGQSEYYPYVFYKIN 377
>VATC_MOUSE (Q9Z1G3) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 96.7 bits (239), Expect = 2e-20 Identities = 51/133 (38%), Positives = 81/133 (60%), Gaps = 1/133 (0%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 E F +RDF+Y+ E ++ K+E+ +L D++ L++W ++SE F +W+H A+RV Sbjct: 242 ENKFIVRDFQYNEEEMKADKEEMTELSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRV 301 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSEDDVGMAAGLG-G 360 FVES+LRYGLP F +++L P+ KS KK+R +L L + +SS D GL Sbjct: 302 FVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSSAAAIIDAPMDIPGLNLS 361 Query: 361 ETESHPYVSFTIN 399 + E +PYV + I+ Sbjct: 362 QQEYYPYVYYKID 374
>VATC_DROME (Q9V7N5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 714 Score = 95.9 bits (237), Expect = 4e-20 Identities = 52/137 (37%), Positives = 86/137 (62%), Gaps = 5/137 (3%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 E+ F +RDF Y+ E + K E+ KL+ D++ L++W ++SE F + +H A+RV Sbjct: 570 ERKFIVRDFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRV 629 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSS----YWRSEDDVGMAAG 351 FVES+LRYGLP F ++++ P+ KS K++R++L L G+ + + S D+V + G Sbjct: 630 FVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGHLDGASAGGAVSSADNVDI-PG 688 Query: 352 LG-GETESHPYVSFTIN 399 LG G++E PYV + +N Sbjct: 689 LGFGQSEYFPYVFYKVN 705
>VATC_ASCSS (Q9NDR5) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 384 Score = 95.5 bits (236), Expect = 5e-20 Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 1/129 (0%) Frame = +1 Query: 13 FQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRVFVE 192 F +R+F ++ + R+ ++ K+ ++ M LL+W ++SEVF++W+H A+RVFVE Sbjct: 247 FFVREFNFNEQDSVVRQDQINKIASEKRKMLGPLLRWLKVNFSEVFTAWIHIKALRVFVE 306 Query: 193 SILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSEDDVGMAAGLG-GETE 369 S+LRYGLP F +VVL P K+ K++R++L L +S+ + D GL G E Sbjct: 307 SVLRYGLPVNFQAVVLDPPKKNRKRLRDVLNNLYCKLDSTGLTNVDAEDSVPGLSLGMQE 366 Query: 370 SHPYVSFTI 396 +PYV + + Sbjct: 367 YYPYVFYKV 375
>VATC_HUMAN (P21283) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 95.5 bits (236), Expect = 5e-20 Identities = 50/133 (37%), Positives = 81/133 (60%), Gaps = 1/133 (0%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 E F +RDF+Y+ E ++ K+E+ +L D++ L++W ++SE F +W+H A+RV Sbjct: 242 ENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRV 301 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSEDDVGMAAGLG-G 360 FVES+LRYGLP F +++L P+ K+ KK+R +L L + +SS D GL Sbjct: 302 FVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSSAAAIIDAPMDIPGLNLS 361 Query: 361 ETESHPYVSFTIN 399 + E +PYV + I+ Sbjct: 362 QQEYYPYVYYKID 374
>VATC_BOVIN (P21282) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 381 Score = 95.1 bits (235), Expect = 7e-20 Identities = 50/133 (37%), Positives = 81/133 (60%), Gaps = 1/133 (0%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 E F +RDF+Y+ E ++ K+E+ +L D++ L++W ++SE F +W+H A+RV Sbjct: 242 ENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRV 301 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSEDDVGMAAGLG-G 360 FVES+LRYGLP F +++L P+ K+ KK+R +L L + +SS D GL Sbjct: 302 FVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLYELYKHLDSSAAAIIDAPMDIPGLNLS 361 Query: 361 ETESHPYVSFTIN 399 + E +PYV + I+ Sbjct: 362 QQEYYPYVYYKID 374
>VATC_DICDI (P54648) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 368 Score = 87.4 bits (215), Expect = 1e-17 Identities = 44/133 (33%), Positives = 77/133 (57%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 EK + +RDF+ QE KL +D++ RTSL++WC ++ E F +W+H VRV Sbjct: 243 EKKWVVRDFKLE---DNKPTQERSKLTEDKKNCRTSLIRWCRLNFPEAFMAWVHLKVVRV 299 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSEDDVGMAAGLGGE 363 FVES+LR+G+P F ++++ P ++KKVR+IL S++ +++ Sbjct: 300 FVESVLRFGIPFNFQAILMKPQKGADKKVRDILFDQFKYLGSAHISGKNET------DDS 353 Query: 364 TESHPYVSFTINF 402 + +PY+S ++N+ Sbjct: 354 EKFYPYISVSVNW 366
>VATC_CAEEL (Q9XXU9) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 384 Score = 86.7 bits (213), Expect = 3e-17 Identities = 46/134 (34%), Positives = 77/134 (57%), Gaps = 2/134 (1%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 E F +RDF Y E ++ + E +KL+ +++ L++W ++ E+F++++H A+RV Sbjct: 245 ENKFIVRDFVYDEETLKAGRTERDKLMAEKQRQYAPLIRWLKINFGEIFAAYIHIKALRV 304 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSEDDVGMAAGLG-- 357 FVES+LRYGLP F + V+ P+ +KK+R L L + + S D + + L Sbjct: 305 FVESVLRYGLPVNFQAAVIEPAKGQQKKLRQELHKLYIHLDGSAAGPIDTLEDSPALMSL 364 Query: 358 GETESHPYVSFTIN 399 G E +PYV F +N Sbjct: 365 GVNEYYPYVFFKLN 378
>VATC_SCHPO (Q9HDW6) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) Length = 394 Score = 78.2 bits (191), Expect = 9e-15 Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 9/140 (6%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 E + IR+F + +E+ + E + ++ M +SLL++ ++SE F W+H + V Sbjct: 248 EAKYTIREFTFEQGLRETEQSEFDDAAVKEKRMLSSLLRYASIAFSESFQGWIHLKCLCV 307 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEG----LCGNT--NSSYWRSEDDVGM- 342 +VESILRYGLP F SV+ P KSE K++NIL L N N+ + G+ Sbjct: 308 YVESILRYGLPPDFSSVIFQPMAKSEVKIKNILLSKYAYLAQNPVGNNKVKNVDSSAGLD 367 Query: 343 --AAGLGGETESHPYVSFTI 396 A L + E P+V FT+ Sbjct: 368 ESMADLNLDEEYLPFVLFTV 387
>VATC_YEAST (P31412) Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C| subunit) (Vacuolar proton pump C subunit) (V-ATPase 42 kDa subunit) Length = 391 Score = 68.6 bits (166), Expect = 7e-12 Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 9/141 (6%) Frame = +1 Query: 4 EKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRV 183 EK F R+F YS E + K+E + ++ +R L++ +Y +VF +W H A+RV Sbjct: 251 EKKFIPREFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFHIKALRV 310 Query: 184 FVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYW---------RSEDDV 336 +VES+LRYGLP F ++A K+ K ++ L G + + + + + Sbjct: 311 YVESVLRYGLPPHFNIKIIAVPPKNLSKCKSELIDAFGFLGGNAFMKDKKGKINKQDTSL 370 Query: 337 GMAAGLGGETESHPYVSFTIN 399 A L +TE P+V + IN Sbjct: 371 HQYASL-VDTEYEPFVMYIIN 390
>RPOA1_SULSO (Q980R2) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 880 Score = 32.7 bits (73), Expect = 0.44 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = +1 Query: 109 SLLQWCYASYSEVFSSWMHFSAVRVFVESILRYGLPARFLSVVLAPSTKSE 261 S+L W YS+ + W+ + RVF+ + G R V L K E Sbjct: 610 SILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKE 660
>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Anion exchanger 3 brain isoform) Length = 1233 Score = 32.3 bits (72), Expect = 0.57 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = +1 Query: 70 LEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRVFVESILRYGLPARFLSVVLAPS 249 LEK+ +D E T +L C + ++++ S V +ES+L +P RFL V+L PS Sbjct: 507 LEKIPEDAEA--TVVLVGCVPFLEQPAAAFVRLSEA-VLLESVLEVPVPVRFLFVMLGPS 563
>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 32.3 bits (72), Expect = 0.57 Identities = 22/63 (34%), Positives = 33/63 (52%) Frame = +1 Query: 70 LEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRVFVESILRYGLPARFLSVVLAPS 249 LEK+ +D E T +L C + +++ S V +ES+L +P RFL V+L PS Sbjct: 505 LEKIPEDAEA--TVVLVGCVPFLEQPAGAFVRLSEA-VLLESVLEVPVPVRFLFVMLGPS 561 Query: 250 TKS 258 S Sbjct: 562 HTS 564
>B3A3_HUMAN (P48751) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Cardiac/brain band 3-like protein) (CAE3/BAE3) Length = 1232 Score = 31.6 bits (70), Expect = 0.97 Identities = 21/63 (33%), Positives = 34/63 (53%) Frame = +1 Query: 70 LEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRVFVESILRYGLPARFLSVVLAPS 249 LEK+ +D E T +L C + ++++ + V +ES+L +P RFL V+L PS Sbjct: 506 LEKIPEDAEA--TVVLVGCVPFLEQPAAAFVRLNEA-VLLESVLEVPVPVRFLFVMLGPS 562 Query: 250 TKS 258 S Sbjct: 563 HTS 565
>MEDB_GIALA (Q08014) Median body protein| Length = 857 Score = 30.4 bits (67), Expect = 2.2 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +1 Query: 22 RDFEYSPEAQESRKQELEKLLQDQEVMRTSLL 117 R+ + E + E+E+LL+D+ VMRT LL Sbjct: 517 RELRLKDKELEEKNAEIERLLEDRRVMRTELL 548
>Y177_TREPA (O83207) Hypothetical protein TP0177| Length = 436 Score = 29.3 bits (64), Expect = 4.8 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 187 VESILRYGLPARFLSVVLAPSTKSEKKVRNILEGLCGNTNSSYWRSE 327 +E I R GLP +V S RNI +C +T+ S+W +E Sbjct: 139 LEQITRVGLP-----IVAVSSALQALLYRNISPDICMSTDGSFWAAE 180
>B3A3_RAT (P23348) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 28.9 bits (63), Expect = 6.3 Identities = 21/63 (33%), Positives = 33/63 (52%) Frame = +1 Query: 70 LEKLLQDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRVFVESILRYGLPARFLSVVLAPS 249 LEK+ +D E T +L + ++++ S V +ES+L +P RFL V+L PS Sbjct: 505 LEKIPEDAEA--TVVLVGSVPFLEQPAAAFVRLSEA-VLLESVLEVPVPVRFLFVMLGPS 561 Query: 250 TKS 258 S Sbjct: 562 HTS 564
>PNPO_HUMAN (Q9NVS9) Pyridoxine-5'-phosphate oxidase (EC 1.4.3.5)| (Pyridoxamine-phosphate oxidase) Length = 261 Score = 28.5 bits (62), Expect = 8.2 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Frame = +1 Query: 43 EAQESRKQELEKLLQDQEVMRTSLLQW-CYASYSEVFSSWMHFSAVRVFVESILRYGLP 216 E + +ELE+L QDQEV + W Y Y +V W R+ + R GLP Sbjct: 182 EYLRKKNEELEQLYQDQEVPKPK--SWGGYVLYPQVMEFWQG-QTNRLHDRIVFRRGLP 237
>SYD1_STRMU (Q8DSG3) Aspartyl-tRNA synthetase 1 (EC 6.1.1.12) (Aspartate--tRNA| ligase 1) (AspRS 1) Length = 583 Score = 28.5 bits (62), Expect = 8.2 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 163 HFSAVRVFVESILRYGLPARFLSVVLAPSTKSEKKVRNILEGL 291 ++ VR F + LR F V L S SE+ VRN++EG+ Sbjct: 210 YYQIVRCFRDEDLRGDRQPEFTQVDLEMSFVSEEDVRNLVEGM 252
>BRWD2_HUMAN (Q9BZH6) Bromodomain and WD-repeat domain-containing protein 2| (WD-repeat protein 11) Length = 1224 Score = 28.5 bits (62), Expect = 8.2 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = +1 Query: 85 QDQEVMRTSLLQWCYASYSEVFSSWMHFSAVRVFVESILRYG 210 Q + + L C+ S +E S +F +FVE+ L+YG Sbjct: 1123 QKSKALLVLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYG 1164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,927,234 Number of Sequences: 219361 Number of extensions: 1128230 Number of successful extensions: 4085 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3922 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4080 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2793557952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
