ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39c20 |
|---|---|
| Clone Library Name | barley_pub |
>YGL4_YEAST (P53134) Putative oligopeptide transporter YGL114w| Length = 725 Score = 44.7 bits (104), Expect = 2e-04 Identities = 37/170 (21%), Positives = 70/170 (41%), Gaps = 1/170 (0%) Frame = +1 Query: 10 EQLTVRGIVVSAILGVLFCLITHKLNLTVGIIPSLNVAAGLLGY-FLVRTWTAALERFGI 186 +Q+T+R + +G L + L G + +++ + LL F W Sbjct: 22 KQITLRATIAGIAIGSLVLTSNFQFGLQTGWVSMMSLPSALLACAFFKNIWPLIFPN--- 78 Query: 187 VSKPFTKQENTVIQTCVVACYGLAFSGGFGSYMLAMDQKTYELIGTDYPGNRAVDVKNPS 366 +PF+ EN +Q+ VA + GF + A+++ + D G ++ + Sbjct: 79 -DRPFSDVENVYVQSMAVAVGTGPLAFGFVGVIPAIEK----FLTNDESGGLREQGQSFT 133 Query: 367 LSWMIXXXXXXXXXXXXXXXALRKVMVIDYKLTYPSGTATAMLINSFHTT 516 ++ LRK +++ KL +PSG+ATA LI+ + T Sbjct: 134 FRELLIWSTALAFFGIFFAVPLRKQVIVREKLPFPSGSATATLISVLNGT 183
>SOXC_RHOSG (P54998) Dibenzothiophene desulfurization enzyme C (DBT sulfur| dioxygenase) Length = 417 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = +3 Query: 9 GAAHGAGDSGQRHTRGALLPHHAQAQPHGGDHPLAQRRRGAARILPRADLDGGAREVRHR 188 G AHGA D+ + +TR P + P R G I + D ARE H Sbjct: 264 GIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTIRSYGEFTIALQG-ADAAAREAAHL 322 Query: 189 LQALHQAGEHRHPD 230 LQ + G+ P+ Sbjct: 323 LQTVWDKGDALTPE 336
>AOX_BLUGR (Q8X1N9) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)| Length = 358 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 150 HEEVSEQPRGDVERGDDPHREVELVRDEAEEHPEYGADHYPP 25 H EV+ G++++ +DP+ V RD+A HP G +H P Sbjct: 309 HREVNHT-LGNLDQNEDPNPFVSEYRDKAAPHPSKGIEHIRP 349
>FZD4_XENLA (Q9PT62) Frizzled 4 precursor (Frizzled-4) (Fz-4) (Xfz4)| Length = 523 Score = 30.4 bits (67), Expect = 4.5 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Frame = +1 Query: 100 IIPSLNVAAGLLGYFLVR-------TWTAALERFGIVSKPFTKQENTVIQTCVVACY 249 +I +L +AAGL+ F +R T T LER + F+ TV TCV+ACY Sbjct: 386 VIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVKIGVFSVLY-TVPATCVIACY 441
>FZD4_CHICK (Q9IA05) Frizzled 4 precursor (Frizzled-4) (Fz-4) (cFz-4)| Length = 525 Score = 30.4 bits (67), Expect = 4.5 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Frame = +1 Query: 100 IIPSLNVAAGLLGYFLVR-------TWTAALERFGIVSKPFTKQENTVIQTCVVACY 249 +I +L +AAGL+ F +R T T LER + F+ TV TCV+ACY Sbjct: 388 VIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVKIGVFSVLY-TVPATCVIACY 443
>FZD4_RAT (Q9QZH0) Frizzled 4 precursor (Frizzled-4) (Fz-4) (rFz4)| Length = 538 Score = 30.4 bits (67), Expect = 4.5 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Frame = +1 Query: 100 IIPSLNVAAGLLGYFLVR-------TWTAALERFGIVSKPFTKQENTVIQTCVVACY 249 +I +L +AAGL+ F +R T T LER + F+ TV TCV+ACY Sbjct: 401 VIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVKIGVFSVLY-TVPATCVIACY 456
>FZD4_MOUSE (Q61088) Frizzled 4 precursor (Frizzled-4) (Fz-4) (mFz4)| Length = 537 Score = 30.4 bits (67), Expect = 4.5 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Frame = +1 Query: 100 IIPSLNVAAGLLGYFLVR-------TWTAALERFGIVSKPFTKQENTVIQTCVVACY 249 +I +L +AAGL+ F +R T T LER + F+ TV TCV+ACY Sbjct: 400 VIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVKIGVFSVLY-TVPATCVIACY 455
>FZD4_HUMAN (Q9ULV1) Frizzled 4 precursor (Frizzled-4) (Fz-4) (hFz4) (FzE4)| Length = 537 Score = 30.4 bits (67), Expect = 4.5 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Frame = +1 Query: 100 IIPSLNVAAGLLGYFLVR-------TWTAALERFGIVSKPFTKQENTVIQTCVVACY 249 +I +L +AAGL+ F +R T T LER + F+ TV TCV+ACY Sbjct: 400 VIGTLFIAAGLVALFKIRSNLQKDGTKTDKLERLMVKIGVFSVLY-TVPATCVIACY 455
>YTE4_CAEEL (Q17865) Hypothetical protein C09G1.4| Length = 546 Score = 30.0 bits (66), Expect = 5.8 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = -2 Query: 284 IYDPKPPLKARP*QATTQVWMTVFSCLVKGLETMPNLSSAAVQVRTRKYPSSP 126 IYD +PP++ P Q T+ MTV + L L+ NL + +R RK P++P Sbjct: 306 IYDAQPPIRPLPQQQTS--LMTVANQLPGSLD---NLHINNLNMRRRKLPTAP 353
>RS15_VIBVY (Q7MI12) 30S ribosomal protein S15| Length = 89 Score = 30.0 bits (66), Expect = 5.8 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = +3 Query: 3 VAGAAHGAGDSGQRHTRGALLP---HHAQA--QPHGGDHPLAQRRRGAARILPR 149 VA A G GD+G + ALL +H Q Q H GDH RRG R++ R Sbjct: 12 VADYARGEGDTGSPEVQVALLTASINHLQGHFQAHKGDH---HSRRGLLRMVSR 62
>RS15_VIBVU (Q8DBV5) 30S ribosomal protein S15| Length = 89 Score = 30.0 bits (66), Expect = 5.8 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = +3 Query: 3 VAGAAHGAGDSGQRHTRGALLP---HHAQA--QPHGGDHPLAQRRRGAARILPR 149 VA A G GD+G + ALL +H Q Q H GDH RRG R++ R Sbjct: 12 VADYARGEGDTGSPEVQVALLTASINHLQGHFQAHKGDH---HSRRGLLRMVSR 62
>MODU_DROME (P13469) DNA-binding protein modulo| Length = 542 Score = 30.0 bits (66), Expect = 5.8 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 13/57 (22%) Frame = -1 Query: 168 RRRPGPHEEV---SEQPRGDVER------GDDPHREVE----LVRDEAEEHPEYGAD 37 + R P +EV SE+ DVE GDD E E L+ DEAEE EY +D Sbjct: 46 KSRKQPVKEVPQFSEEDESDVEEQNDEQPGDDSDFETEEAAGLIDDEAEEDEEYNSD 102
>Y845_CHLTE (Q8KE45) Hypothetical UPF0324 membrane protein CT0845| Length = 358 Score = 30.0 bits (66), Expect = 5.8 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Frame = +1 Query: 37 VSAILGVLFCL--ITHKLNLTVGIIPSLNVAAGLLGYFLVRTWTAALERFGIVSKPFTKQ 210 VS ++ V+F L I HK N G P + + +F++ + G+V KP T+ Sbjct: 247 VSMLVPVVFILSLIFHKRNQKDGNAPRRTLLPPFIIFFVL---FVGINSLGVVPKPATQF 303 Query: 211 ENTVIQTCVVACYG 252 N V + C+V G Sbjct: 304 INDVSRWCLVTAIG 317
>KUP_STRP6 (Q5XB99) Probable potassium transport system protein kup| Length = 666 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Frame = +1 Query: 130 LLGYFLVRTWTAALERFGIVSKPFTKQENTVIQTCVVACYGLA--------FSGGFGSYM 285 +L Y W A + GI PF + ++ +V+ LA SG F Sbjct: 261 VLSYCGQAAWILANKHSGIELNPFFASVPSQLRVYLVSLATLAAIIASQALISGSFTLVS 320 Query: 286 LAMDQKTYELIGTDYPGNRAVDVKNPSLSWMI 381 AM K + L YPG + P ++W++ Sbjct: 321 EAMRLKIFPLFRVTYPGANLGQLYIPVINWIL 352
>KUP_STRP3 (Q8K6Y2) Probable potassium transport system protein kup| Length = 666 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Frame = +1 Query: 130 LLGYFLVRTWTAALERFGIVSKPFTKQENTVIQTCVVACYGLA--------FSGGFGSYM 285 +L Y W A + GI PF + ++ +V+ LA SG F Sbjct: 261 VLSYCGQAAWILANKHSGIELNPFFASVPSQLRVYLVSLATLAAIIASQALISGSFTLVS 320 Query: 286 LAMDQKTYELIGTDYPGNRAVDVKNPSLSWMI 381 AM K + L YPG + P ++W++ Sbjct: 321 EAMRLKIFPLFRVTYPGANLGQLYIPVINWIL 352
>KUP_STRP1 (Q99Z39) Probable potassium transport system protein kup| Length = 666 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Frame = +1 Query: 130 LLGYFLVRTWTAALERFGIVSKPFTKQENTVIQTCVVACYGLA--------FSGGFGSYM 285 +L Y W A + GI PF + ++ +V+ LA SG F Sbjct: 261 VLSYCGQAAWILANKHSGIELNPFFASVPSQLRVYLVSLATLAAIIASQALISGSFTLVS 320 Query: 286 LAMDQKTYELIGTDYPGNRAVDVKNPSLSWMI 381 AM K + L YPG + P ++W++ Sbjct: 321 EAMRLKIFPLFRVTYPGANLGQLYIPVINWIL 352
>GNTU_ECOLI (P0AC96) Low-affinity gluconate transporter (Gluconate permease)| (Gnt-I system) Length = 446 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 85 NLTVGIIPSLNVAAGLLGYFLVRTWTAALERFGIVSKPFTKQENTVIQTCVVACYGLAFS 264 +L++ ++P + V + V + A E F + PFT ++ C+VA YGLA Sbjct: 229 SLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFT----AILVACLVAIYGLAMR 284 Query: 265 GG 270 G Sbjct: 285 QG 286
>GNTU_ECO57 (P0AC97) Low-affinity gluconate transporter (Gluconate permease)| (Gnt-I system) Length = 446 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/62 (29%), Positives = 30/62 (48%) Frame = +1 Query: 85 NLTVGIIPSLNVAAGLLGYFLVRTWTAALERFGIVSKPFTKQENTVIQTCVVACYGLAFS 264 +L++ ++P + V + V + A E F + PFT ++ C+VA YGLA Sbjct: 229 SLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFT----AILVACLVAIYGLAMR 284 Query: 265 GG 270 G Sbjct: 285 QG 286
>CVRA_YERPS (Q669I8) Cell volume regulation protein A| Length = 575 Score = 29.3 bits (64), Expect = 10.0 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = +1 Query: 28 GIVVSAILGVLFCLITHKLNLTVGIIPSLNVAAGLLGYFLVRTWTAALERFGIVS 192 GI++ + G L L+ +++ L G+ P L V+ G+L + L AL GI++ Sbjct: 198 GIIIGLLGGGLLLLLINRMELANGLYPLLAVSGGILVFAL----ATALNGSGILA 248
>MMPLA_STRCO (Q53902) Putative membrane protein actII-3| Length = 711 Score = 29.3 bits (64), Expect = 10.0 Identities = 14/40 (35%), Positives = 25/40 (62%) Frame = +1 Query: 25 RGIVVSAILGVLFCLITHKLNLTVGIIPSLNVAAGLLGYF 144 RG+++ IL V+FC++ L L + P L +A+ +L +F Sbjct: 513 RGLIIPVILAVVFCILA--LLLRALVAPLLLIASVVLSFF 550
>KUP_STRP8 (Q8P0C8) Probable potassium transport system protein kup| Length = 666 Score = 29.3 bits (64), Expect = 10.0 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 8/92 (8%) Frame = +1 Query: 130 LLGYFLVRTWTAALERFGIVSKPFTKQENTVIQTCVVACYGLA--------FSGGFGSYM 285 +L Y W A + GI PF + + VV LA SG F Sbjct: 261 VLSYCGQAAWILANKHSGIELNPFFASVPSQLTVYVVILATLAAIIASQALISGSFTLVS 320 Query: 286 LAMDQKTYELIGTDYPGNRAVDVKNPSLSWMI 381 AM K + L YPG + P ++W++ Sbjct: 321 EAMRLKIFPLFRVTYPGANLGQLYIPVINWIL 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,722,273 Number of Sequences: 219361 Number of extensions: 1460151 Number of successful extensions: 4392 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4254 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4389 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
