ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39b23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121641.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055F21, full insert sequence Length = 2914 Score = 391 bits (197), Expect = e-105 Identities = 372/428 (86%), Gaps = 2/428 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 164 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 223 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 224 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 283 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||||||||| |||||||||||||| || ||||||||||||||||| || | || || || Sbjct: 284 gctccagcttttccgcggcgacactgtgctgctcaagggtaagaagagaaaagacaccat 343 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| || Sbjct: 344 ctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggttgt 403 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 |||||| ||| || |||| |||| |||||||||| ||||||||||| ||||||||||| | Sbjct: 404 caggaagaacctgagagtacgac-ttggtgatgtcgtgtctgttcatcaatgcccagatg 462 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 463 tcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcaccg 522 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| Sbjct: 523 gaaactt-gtttgatgccttcctgaaaccgtacttccttgaagcataccgtcctttgagg 581 Query: 450 aagggaga 457 || ||||| Sbjct: 582 aaaggaga 589
>dbj|AK099712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013082G14, full insert sequence Length = 2680 Score = 391 bits (197), Expect = e-105 Identities = 372/428 (86%), Gaps = 2/428 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 164 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 223 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 224 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 283 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||||||||| |||||||||||||| || ||||||||||||||||| || | || || || Sbjct: 284 gctccagcttttccgcggcgacactgtgctgctcaagggtaagaagagaaaagacaccat 343 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| || Sbjct: 344 ctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggttgt 403 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 |||||| ||| || |||| |||| |||||||||| ||||||||||| ||||||||||| | Sbjct: 404 caggaagaacctgagagtacgac-ttggtgatgtcgtgtctgttcatcaatgcccagatg 462 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 463 tcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcaccg 522 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| Sbjct: 523 gaaactt-gtttgatgccttcctgaaaccgtacttccttgaagcataccgtcctttgagg 581 Query: 450 aagggaga 457 || ||||| Sbjct: 582 aaaggaga 589
>dbj|AK099889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112O07, full insert sequence Length = 2685 Score = 391 bits (197), Expect = e-105 Identities = 372/428 (86%), Gaps = 2/428 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 164 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 223 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 224 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 283 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||||||||| |||||||||||||| || ||||||||||||||||| || | || || || Sbjct: 284 gctccagcttttccgcggcgacactgtgctgctcaagggtaagaagagaaaagacaccat 343 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| || Sbjct: 344 ctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggttgt 403 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 |||||| ||| || |||| |||| |||||||||| ||||||||||| ||||||||||| | Sbjct: 404 caggaagaacctgagagtacgac-ttggtgatgtcgtgtctgttcatcaatgcccagatg 462 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 463 tcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcaccg 522 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| Sbjct: 523 gaaactt-gtttgatgccttcctgaaaccgtacttccttgaagcataccgtcctttgagg 581 Query: 450 aagggaga 457 || ||||| Sbjct: 582 aaaggaga 589
>dbj|AK098980.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093N05, full insert sequence Length = 2701 Score = 391 bits (197), Expect = e-105 Identities = 372/428 (86%), Gaps = 2/428 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 164 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 223 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 224 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 283 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||||||||| |||||||||||||| || ||||||||||||||||| || | || || || Sbjct: 284 gctccagcttttccgcggcgacactgtgctgctcaagggtaagaagagaaaagacaccat 343 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| || Sbjct: 344 ctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggttgt 403 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 |||||| ||| || |||| |||| |||||||||| ||||||||||| ||||||||||| | Sbjct: 404 caggaagaacctgagagtacgac-ttggtgatgtcgtgtctgttcatcaatgcccagatg 462 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 463 tcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcaccg 522 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| Sbjct: 523 gaaactt-gtttgatgccttcctgaaaccgtacttccttgaagcataccgtcctttgagg 581 Query: 450 aagggaga 457 || ||||| Sbjct: 582 aaaggaga 589
>dbj|AK098874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D04, full insert sequence Length = 2685 Score = 391 bits (197), Expect = e-105 Identities = 372/428 (86%), Gaps = 2/428 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 164 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 223 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 224 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 283 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||||||||| |||||||||||||| || ||||||||||||||||| || | || || || Sbjct: 284 gctccagcttttccgcggcgacactgtgctgctcaagggtaagaagagaaaagacaccat 343 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| || Sbjct: 344 ctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggttgt 403 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 |||||| ||| || |||| |||| |||||||||| ||||||||||| ||||||||||| | Sbjct: 404 caggaagaacctgagagtacgac-ttggtgatgtcgtgtctgttcatcaatgcccagatg 462 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 463 tcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcaccg 522 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| Sbjct: 523 gaaactt-gtttgatgccttcctgaaaccgtacttccttgaagcataccgtcctttgagg 581 Query: 450 aagggaga 457 || ||||| Sbjct: 582 aaaggaga 589
>dbj|AK064955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A05, full insert sequence Length = 2685 Score = 391 bits (197), Expect = e-105 Identities = 372/428 (86%), Gaps = 2/428 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 164 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 223 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 224 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 283 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||||||||| |||||||||||||| || ||||||||||||||||| || | || || || Sbjct: 284 gctccagcttttccgcggcgacactgtgctgctcaagggtaagaagagaaaagacaccat 343 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| || Sbjct: 344 ctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggttgt 403 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 |||||| ||| || |||| |||| |||||||||| ||||||||||| ||||||||||| | Sbjct: 404 caggaagaacctgagagtacgac-ttggtgatgtcgtgtctgttcatcaatgcccagatg 462 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 463 tcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcaccg 522 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 ||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| Sbjct: 523 gaaactt-gtttgatgccttcctgaaaccgtacttccttgaagcataccgtcctttgagg 581 Query: 450 aagggaga 457 || ||||| Sbjct: 582 aaaggaga 589
>ref|NM_196705.1| Oryza sativa (japonica cultivar-group) putative endoplasmic reticulum membrane fusion protein (OSJNBa0046P18.14), mRNA Length = 2454 Score = 333 bits (168), Expect = 3e-88 Identities = 367/431 (85%), Gaps = 2/431 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||||||||||||||| ||||| ||| |||||||||| || ||||| || || || Sbjct: 45 gaagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggt 104 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| Sbjct: 105 ggacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagag 164 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||| |||||||||||||||||||||||||| |||||||| ||||| |||| ||||| || Sbjct: 165 gctgcagctcttccgcggcgacaccgtcctcctcaagggcaagaagaggaaagatactat 224 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 |||||||| ||||| || || || ||||||||||| || || || ||||||||| || Sbjct: 225 ttgcattgtccttgcggacgaaacctgtgaggagcccaagattaggatgaacaaggttgt 284 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 |||||| ||| || | ||||||| |||||||||| || ||||| ||||| |||| || | Sbjct: 285 caggaagaacctgagggtgcgac-ttggtgatgttgtttctgtccaccagtgccaggatg 343 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 |||||||||| || ||||||||||| ||||| |||||||| ||||||||||||||||| | Sbjct: 344 tgaaatacgggaaacgtgtgcacattcttccgattgatgatacagttgaaggcattaccg 403 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 | ||| | ||||||||||||| |||| ||||||||| | ||||| ||||| || | ||| Sbjct: 404 ggaacct-gtttgatgccttcctgaagccatacttcttagaagcataccgcccagtgagg 462 Query: 450 aagggagatct 460 || |||||||| Sbjct: 463 aaaggagatct 473
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 194 bits (98), Expect = 2e-46 Identities = 184/210 (87%), Gaps = 2/210 (0%) Strand = Plus / Minus Query: 208 atctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagacc 267 ||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| Sbjct: 2837302 atctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggtt 2837243 Query: 268 gtcaggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccaga 327 |||||||| ||| || |||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct: 2837242 gtcaggaagaacctgagagtacgactt-ggtgatgtcgtgtctgttcatcaatgcccaga 2837184 Query: 328 cgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattac 387 || ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || Sbjct: 2837183 tgtcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcac 2837124 Query: 388 tggaaacttngtttgatgccttcttgaaac 417 |||||||| ||||||||||||| |||||| Sbjct: 2837123 cggaaactt-gtttgatgccttcctgaaac 2837095 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 2838072 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 2838013 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 2838012 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 2837953 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagg 187 ||||||||| |||||||||||||| || |||||||||| Sbjct: 2837952 gctccagcttttccgcggcgacactgtgctgctcaagg 2837915 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 420 tacttccttgaagcttaccgtcctttaaggaagggaga 457 |||||||||||||| ||||||||||| ||||| ||||| Sbjct: 2836758 tacttccttgaagcataccgtcctttgaggaaaggaga 2836721
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 194 bits (98), Expect = 2e-46 Identities = 143/158 (90%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||||||||||||||| ||||| ||| |||||||||| || ||||| || || || Sbjct: 15397525 gaagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggt 15397584 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| Sbjct: 15397585 ggacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagag 15397644 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagg 187 ||| |||||||||||||||||||||||||| ||||||| Sbjct: 15397645 gctgcagctcttccgcggcgacaccgtcctcctcaagg 15397682 Score = 127 bits (64), Expect = 3e-26 Identities = 191/231 (82%), Gaps = 2/231 (0%) Strand = Plus / Plus Query: 185 agggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgaggagc 244 |||| ||||| |||| ||||| || |||||||| ||||| || || || |||||||||| Sbjct: 15398417 agggcaagaagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagc 15398476 Query: 245 caaaaatcagaatgaacaagaccgtcaggaaaaacttgcgagtgcgactttggtgatgtg 304 | || || || ||||||||| |||||||| ||| || | ||||||||| |||||||| Sbjct: 15398477 ccaagattaggatgaacaaggttgtcaggaagaacctgagggtgcgactt-ggtgatgtt 15398535 Query: 305 gtgtctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctatt 364 || ||||| ||||| |||| || ||||||||||| || ||||||||||| ||||| ||| Sbjct: 15398536 gtttctgtccaccagtgccaggatgtgaaatacgggaaacgtgtgcacattcttccgatt 15398595 Query: 365 gatgacacagttgaaggcattactggaaacttngtttgatgccttcttgaa 415 ||||| ||||||||||||||||| || ||| | ||||||||||||| |||| Sbjct: 15398596 gatgatacagttgaaggcattaccgggaacct-gtttgatgccttcctgaa 15398645
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 194 bits (98), Expect = 2e-46 Identities = 184/210 (87%), Gaps = 2/210 (0%) Strand = Plus / Minus Query: 208 atctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagacc 267 ||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| Sbjct: 2837413 atctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggtt 2837354 Query: 268 gtcaggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccaga 327 |||||||| ||| || |||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct: 2837353 gtcaggaagaacctgagagtacgactt-ggtgatgtcgtgtctgttcatcaatgcccaga 2837295 Query: 328 cgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattac 387 || ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || Sbjct: 2837294 tgtcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcac 2837235 Query: 388 tggaaacttngtttgatgccttcttgaaac 417 |||||||| ||||||||||||| |||||| Sbjct: 2837234 cggaaactt-gtttgatgccttcctgaaac 2837206 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 2838183 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 2838124 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 2838123 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 2838064 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagg 187 ||||||||| |||||||||||||| || |||||||||| Sbjct: 2838063 gctccagcttttccgcggcgacactgtgctgctcaagg 2838026 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 420 tacttccttgaagcttaccgtcctttaaggaagggaga 457 |||||||||||||| ||||||||||| ||||| ||||| Sbjct: 2836869 tacttccttgaagcataccgtcctttgaggaaaggaga 2836832
>gb|AC087544.2|AC087544 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0046P18, complete sequence Length = 144720 Score = 194 bits (98), Expect = 2e-46 Identities = 143/158 (90%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||||||||||||||| ||||| ||| |||||||||| || ||||| || || || Sbjct: 114888 gaagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggt 114947 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| Sbjct: 114948 ggacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagag 115007 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagg 187 ||| |||||||||||||||||||||||||| ||||||| Sbjct: 115008 gctgcagctcttccgcggcgacaccgtcctcctcaagg 115045 Score = 127 bits (64), Expect = 3e-26 Identities = 191/231 (82%), Gaps = 2/231 (0%) Strand = Plus / Plus Query: 185 agggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgaggagc 244 |||| ||||| |||| ||||| || |||||||| ||||| || || || |||||||||| Sbjct: 115780 agggcaagaagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagc 115839 Query: 245 caaaaatcagaatgaacaagaccgtcaggaaaaacttgcgagtgcgactttggtgatgtg 304 | || || || ||||||||| |||||||| ||| || | ||||||||| |||||||| Sbjct: 115840 ccaagattaggatgaacaaggttgtcaggaagaacctgagggtgcgactt-ggtgatgtt 115898 Query: 305 gtgtctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctatt 364 || ||||| ||||| |||| || ||||||||||| || ||||||||||| ||||| ||| Sbjct: 115899 gtttctgtccaccagtgccaggatgtgaaatacgggaaacgtgtgcacattcttccgatt 115958 Query: 365 gatgacacagttgaaggcattactggaaacttngtttgatgccttcttgaa 415 ||||| ||||||||||||||||| || ||| | ||||||||||||| |||| Sbjct: 115959 gatgatacagttgaaggcattaccgggaacct-gtttgatgccttcctgaa 116008
>gb|AC137635.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0038D20, from chromosome 3, complete sequence Length = 165395 Score = 194 bits (98), Expect = 2e-46 Identities = 184/210 (87%), Gaps = 2/210 (0%) Strand = Plus / Minus Query: 208 atctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagacc 267 ||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||| Sbjct: 109258 atctgcattgttcttgctgatgacacctgcgaggagccgaagatcagaatgaacaaggtt 109199 Query: 268 gtcaggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccaga 327 |||||||| ||| || |||| |||||| |||||||| ||||||||||| ||||||||||| Sbjct: 109198 gtcaggaagaacctgagagtacgactt-ggtgatgtcgtgtctgttcatcaatgcccaga 109140 Query: 328 cgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattac 387 || ||||||||||||||||||||||||||||| |||||||| || ||||| ||||| || Sbjct: 109139 tgtcaaatacggcaagcgtgtgcacatacttccaattgatgatactgttgagggcatcac 109080 Query: 388 tggaaacttngtttgatgccttcttgaaac 417 |||||||| ||||||||||||| |||||| Sbjct: 109079 cggaaactt-gtttgatgccttcctgaaac 109051 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Minus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||| | ||||||||| ||||||||| |||||||||| || ||||| || || || Sbjct: 110028 gaagaaggatttctcgacggcgatcctcgagaggaagaagtcgccgaaccggctggtggt 109969 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||||||| || ||||||||| ||| | ||||||||||||||||||| Sbjct: 109968 cgacgaggccaccaacgatgataactccgtcatcgggatgcaccccgacaccatggagaa 109909 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagg 187 ||||||||| |||||||||||||| || |||||||||| Sbjct: 109908 gctccagcttttccgcggcgacactgtgctgctcaagg 109871 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 420 tacttccttgaagcttaccgtcctttaaggaagggaga 457 |||||||||||||| ||||||||||| ||||| ||||| Sbjct: 108714 tacttccttgaagcataccgtcctttgaggaaaggaga 108677
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 194 bits (98), Expect = 2e-46 Identities = 143/158 (90%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||||||||||||||| ||||| ||| |||||||||| || ||||| || || || Sbjct: 15405766 gaagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggt 15405825 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| Sbjct: 15405826 ggacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagag 15405885 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagg 187 ||| |||||||||||||||||||||||||| ||||||| Sbjct: 15405886 gctgcagctcttccgcggcgacaccgtcctcctcaagg 15405923 Score = 127 bits (64), Expect = 3e-26 Identities = 191/231 (82%), Gaps = 2/231 (0%) Strand = Plus / Plus Query: 185 agggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgaggagc 244 |||| ||||| |||| ||||| || |||||||| ||||| || || || |||||||||| Sbjct: 15406658 agggcaagaagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagc 15406717 Query: 245 caaaaatcagaatgaacaagaccgtcaggaaaaacttgcgagtgcgactttggtgatgtg 304 | || || || ||||||||| |||||||| ||| || | ||||||||| |||||||| Sbjct: 15406718 ccaagattaggatgaacaaggttgtcaggaagaacctgagggtgcgactt-ggtgatgtt 15406776 Query: 305 gtgtctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctatt 364 || ||||| ||||| |||| || ||||||||||| || ||||||||||| ||||| ||| Sbjct: 15406777 gtttctgtccaccagtgccaggatgtgaaatacgggaaacgtgtgcacattcttccgatt 15406836 Query: 365 gatgacacagttgaaggcattactggaaacttngtttgatgccttcttgaa 415 ||||| ||||||||||||||||| || ||| | ||||||||||||| |||| Sbjct: 15406837 gatgatacagttgaaggcattaccgggaacct-gtttgatgccttcctgaa 15406886
>ref|NM_111819.3| Arabidopsis thaliana CDC48 (CELL DIVISION CYCLE 48); ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT3G09840 (CDC48) mRNA, complete cds Length = 2797 Score = 133 bits (67), Expect = 6e-28 Identities = 171/206 (83%) Strand = Plus / Plus Query: 55 ctcgagcggaagaagtcccccaaccgactcgtcgtcgacgaggccaccaacgacgacaac 114 |||||| |||||||||| || ||||| ||||||||||| ||||| | |||||| || ||| Sbjct: 215 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 274 Query: 115 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 174 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 275 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 334 Query: 175 gtcctgctcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacact 234 | || ||||||||||||| |||| ||| || ||||||||| ||||| ||||| || Sbjct: 335 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 394 Query: 235 tgtgaggagccaaaaatcagaatgaa 260 |||||||||||||| ||||||||||| Sbjct: 395 tgtgaggagccaaagatcagaatgaa 420 Score = 91.7 bits (46), Expect = 2e-15 Identities = 127/153 (83%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 ||||||||||||||||||||||| || ||||| |||||||| ||||| || ||| ||||| Sbjct: 467 tctgttcaccaatgcccagacgtcaagtacggaaagcgtgttcacatcctgcctgttgat 526 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || || |||||||| | ||||||||| | |||||||| | | ||||||| || ||||| Sbjct: 527 gatactgttgaaggagtgactggaaaccta-tttgatgcttacctgaaaccttatttcct 585 Query: 428 tgaagcttaccgtcctttaaggaagggagatct 460 ||| || |||||||| | |||||||| ||||| Sbjct: 586 tgaggcataccgtccagtgaggaagggtgatct 618
>gb|AF083704.1| Arabidopsis thaliana clone sps248 unknown mRNA Length = 484 Score = 133 bits (67), Expect = 6e-28 Identities = 171/206 (83%) Strand = Plus / Plus Query: 55 ctcgagcggaagaagtcccccaaccgactcgtcgtcgacgaggccaccaacgacgacaac 114 |||||| |||||||||| || ||||| ||||||||||| ||||| | |||||| || ||| Sbjct: 215 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 274 Query: 115 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 174 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 275 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 334 Query: 175 gtcctgctcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacact 234 | || ||||||||||||| |||| ||| || ||||||||| ||||| ||||| || Sbjct: 335 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 394 Query: 235 tgtgaggagccaaaaatcagaatgaa 260 |||||||||||||| ||||||||||| Sbjct: 395 tgtgaggagccaaagatcagaatgaa 420
>gb|AY094434.1| Arabidopsis thaliana AT3g09840/F8A24_11 mRNA, complete cds Length = 2628 Score = 133 bits (67), Expect = 6e-28 Identities = 171/206 (83%) Strand = Plus / Plus Query: 55 ctcgagcggaagaagtcccccaaccgactcgtcgtcgacgaggccaccaacgacgacaac 114 |||||| |||||||||| || ||||| ||||||||||| ||||| | |||||| || ||| Sbjct: 171 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 230 Query: 115 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 174 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 231 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 290 Query: 175 gtcctgctcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacact 234 | || ||||||||||||| |||| ||| || ||||||||| ||||| ||||| || Sbjct: 291 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 350 Query: 235 tgtgaggagccaaaaatcagaatgaa 260 |||||||||||||| ||||||||||| Sbjct: 351 tgtgaggagccaaagatcagaatgaa 376 Score = 91.7 bits (46), Expect = 2e-15 Identities = 127/153 (83%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 ||||||||||||||||||||||| || ||||| |||||||| ||||| || ||| ||||| Sbjct: 423 tctgttcaccaatgcccagacgtcaagtacggaaagcgtgttcacatcctgcctgttgat 482 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || || |||||||| | ||||||||| | |||||||| | | ||||||| || ||||| Sbjct: 483 gatactgttgaaggagtgactggaaaccta-tttgatgcttacctgaaaccttatttcct 541 Query: 428 tgaagcttaccgtcctttaaggaagggagatct 460 ||| || |||||||| | |||||||| ||||| Sbjct: 542 tgaggcataccgtccagtgaggaagggtgatct 574
>gb|AY065076.1| Arabidopsis thaliana putative transitional endoplasmic reticulum ATPase (F8A24.11) mRNA, complete cds Length = 2730 Score = 133 bits (67), Expect = 6e-28 Identities = 171/206 (83%) Strand = Plus / Plus Query: 55 ctcgagcggaagaagtcccccaaccgactcgtcgtcgacgaggccaccaacgacgacaac 114 |||||| |||||||||| || ||||| ||||||||||| ||||| | |||||| || ||| Sbjct: 205 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 264 Query: 115 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 174 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 265 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 324 Query: 175 gtcctgctcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacact 234 | || ||||||||||||| |||| ||| || ||||||||| ||||| ||||| || Sbjct: 325 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 384 Query: 235 tgtgaggagccaaaaatcagaatgaa 260 |||||||||||||| ||||||||||| Sbjct: 385 tgtgaggagccaaagatcagaatgaa 410 Score = 91.7 bits (46), Expect = 2e-15 Identities = 127/153 (83%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 ||||||||||||||||||||||| || ||||| |||||||| ||||| || ||| ||||| Sbjct: 457 tctgttcaccaatgcccagacgtcaagtacggaaagcgtgttcacatcctgcctgttgat 516 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || || |||||||| | ||||||||| | |||||||| | | ||||||| || ||||| Sbjct: 517 gatactgttgaaggagtgactggaaaccta-tttgatgcttacctgaaaccttatttcct 575 Query: 428 tgaagcttaccgtcctttaaggaagggagatct 460 ||| || |||||||| | |||||||| ||||| Sbjct: 576 tgaggcataccgtccagtgaggaagggtgatct 608
>gb|U37587.1|ATU37587 Arabidopsis thaliana cell division cycle protein (CDC48) mRNA, complete cds Length = 2638 Score = 133 bits (67), Expect = 6e-28 Identities = 171/206 (83%) Strand = Plus / Plus Query: 55 ctcgagcggaagaagtcccccaaccgactcgtcgtcgacgaggccaccaacgacgacaac 114 |||||| |||||||||| || ||||| ||||||||||| ||||| | |||||| || ||| Sbjct: 154 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 213 Query: 115 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccgcggcgacacc 174 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| || || ||| Sbjct: 214 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccgtggtgatacc 273 Query: 175 gtcctgctcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacact 234 | || ||||||||||||| |||| ||| || ||||||||| ||||| ||||| || Sbjct: 274 attctcatcaagggtaagaagaggaaggacactgtctgcattgctcttgctgatgagaca 333 Query: 235 tgtgaggagccaaaaatcagaatgaa 260 |||||||||||||| ||||||||||| Sbjct: 334 tgtgaggagccaaagatcagaatgaa 359 Score = 91.7 bits (46), Expect = 2e-15 Identities = 127/153 (83%), Gaps = 1/153 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 ||||||||||||||||||||||| || ||||| |||||||| ||||| || ||| ||||| Sbjct: 406 tctgttcaccaatgcccagacgtcaagtacggaaagcgtgttcacatcctgcctgttgat 465 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || || |||||||| | ||||||||| | |||||||| | | ||||||| || ||||| Sbjct: 466 gatactgttgaaggagtgactggaaaccta-tttgatgcttacctgaaaccttatttcct 524 Query: 428 tgaagcttaccgtcctttaaggaagggagatct 460 ||| || |||||||| | |||||||| ||||| Sbjct: 525 tgaggcataccgtccagtgaggaagggtgatct 557
>gb|DQ359725.1| Glycine max plamsma membrane-associated AAA-ATPase mRNA, complete cds Length = 2628 Score = 105 bits (53), Expect = 1e-19 Identities = 338/431 (78%), Gaps = 2/431 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||||| ||| || || || || || || || ||||| || ||||| || ||||| Sbjct: 87 gaagaaggacttctcaaccgcgattctggaacgcaaaaagtcgccgaaccggcttgtcgt 146 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 || ||||| |||||||||||||||||| ||| || | || ||| | |||||||| | Sbjct: 147 ggatgaggctgtcaacgacgacaactccgtggtcaccatgcatccccaaaccatggaaaa 206 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||| ||||| ||||| || ||||| |||| |||||||||||||| ||| |||||| || Sbjct: 207 gcttcagcttttccgaggggacactatcctcatcaagggtaagaaacggaaggataccat 266 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||| | ||||| ||||| | ||||||||||| || ||||| ||||| || || Sbjct: 267 ttgcatagctcttgctgatgagaactgtgaggagccgaagatcaggatgaataaagttgt 326 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 ||| ||| ||||| || || | |||| ||||| |||||||| ||||| ||||| || | Sbjct: 327 gaggtcaaatttgcgggttcggc-ttggagatgttgtgtctgtgcaccagtgcccggatg 385 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||| || || ||||||||||| || ||||||||||| || ||||||| | |||| Sbjct: 386 ttaaatatgggaaacgtgtgcacattctgcctattgatgataccattgaaggtgtcactg 445 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 | || | ||||||||| ||||||||||| || ||| | ||||||||||||||| | || Sbjct: 446 gcaa-tctgtttgatgctttcttgaaaccctatttcttggaagcttaccgtcctgtcaga 504 Query: 450 aagggagatct 460 || |||||||| Sbjct: 505 aaaggagatct 515
>gb|U20213.1|GMU20213 Glycine max valosin-containing protein mRNA, complete cds Length = 2654 Score = 105 bits (53), Expect = 1e-19 Identities = 338/431 (78%), Gaps = 2/431 (0%) Strand = Plus / Plus Query: 30 gaagaaggactactcgacggccatcctcgagcggaagaagtcccccaaccgactcgtcgt 89 ||||||||||| ||| || || || || || || || ||||| || ||||| || ||||| Sbjct: 107 gaagaaggacttctcaaccgcgattctggaacgcaaaaagtcgccgaaccggcttgtcgt 166 Query: 90 cgacgaggccaccaacgacgacaactccgtcgtcgccctccaccccgacaccatggagag 149 || ||||| |||||||||||||||||| ||| || | || ||| | |||||||| | Sbjct: 167 ggatgaggctgtcaacgacgacaactccgtggtcaccatgcatccccaaaccatggaaaa 226 Query: 150 gctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagganggatacaat 209 ||| ||||| ||||| || ||||| |||| |||||||||||||| ||| |||||| || Sbjct: 227 gcttcagcttttccgaggggacactatcctcatcaagggtaagaaacggaaggataccat 286 Query: 210 ctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaacaagaccgt 269 ||||| | ||||| ||||| | ||||||||||| || ||||| ||||| || || Sbjct: 287 ttgcatagctcttgctgatgagaactgtgaggagccgaagatcaggatgaataaagttgt 346 Query: 270 caggaaaaacttgcgagtgcgactttggtgatgtggtgtctgttcaccaatgcccagacg 329 ||| ||| ||||| || || | |||| ||||| |||||||| ||||| ||||| || | Sbjct: 347 gaggtcaaatttgcgggttcggc-ttggagatgttgtgtctgtgcaccagtgcccggatg 405 Query: 330 tgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaaggcattactg 389 | ||||| || || ||||||||||| || ||||||||||| || ||||||| | |||| Sbjct: 406 ttaaatatgggaaacgtgtgcacattctgcctattgatgataccattgaaggtgtcactg 465 Query: 390 gaaacttngtttgatgccttcttgaaaccatacttccttgaagcttaccgtcctttaagg 449 | || | ||||||||| ||||||||||| || ||| | ||||||||||||||| | || Sbjct: 466 gcaa-tctgtttgatgctttcttgaaaccctatttcttggaagcttaccgtcctgtcaga 524 Query: 450 aagggagatct 460 || |||||||| Sbjct: 525 aaaggagatct 535
>ref|NM_120412.2| Arabidopsis thaliana ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT5G03340 mRNA, complete cds Length = 2671 Score = 93.7 bits (47), Expect = 5e-16 Identities = 128/154 (83%), Gaps = 1/154 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 |||||||||||||||||||| || || || || |||||||| ||||| | ||| ||||| Sbjct: 408 tctgttcaccaatgcccagatgtcaagtatggaaagcgtgttcacatcttgcctgttgat 467 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || |||||||||||| ||||||||||| | |||||||| | | ||||||| ||||| || Sbjct: 468 gatacagttgaaggcgttactggaaacctc-tttgatgcttacctgaaaccttactttct 526 Query: 428 tgaagcttaccgtcctttaaggaagggagatctt 461 || || |||||||| | ||||||||||||||| Sbjct: 527 ggaggcgtaccgtccagtgaggaagggagatctt 560 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/79 (81%) Strand = Plus / Plus Query: 182 tcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgagg 241 ||||||||||||| |||| ||| || | ||||||| || || ||||| || ||||||| Sbjct: 283 tcaagggtaagaagaggaaggacactgtatgcattgccctcgctgatgaaacatgtgagg 342 Query: 242 agccaaaaatcagaatgaa 260 | || || ||||||||||| Sbjct: 343 aacccaagatcagaatgaa 361
>gb|BT006485.1| Arabidopsis thaliana At5g03340 gene, complete cds Length = 2433 Score = 93.7 bits (47), Expect = 5e-16 Identities = 128/154 (83%), Gaps = 1/154 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 |||||||||||||||||||| || || || || |||||||| ||||| | ||| ||||| Sbjct: 313 tctgttcaccaatgcccagatgtcaagtatggaaagcgtgttcacatcttgcctgttgat 372 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || |||||||||||| ||||||||||| | |||||||| | | ||||||| ||||| || Sbjct: 373 gatacagttgaaggcgttactggaaacctc-tttgatgcttacctgaaaccttactttct 431 Query: 428 tgaagcttaccgtcctttaaggaagggagatctt 461 || || |||||||| | ||||||||||||||| Sbjct: 432 ggaggcgtaccgtccagtgaggaagggagatctt 465 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/79 (81%) Strand = Plus / Plus Query: 182 tcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgagg 241 ||||||||||||| |||| ||| || | ||||||| || || ||||| || ||||||| Sbjct: 188 tcaagggtaagaagaggaaggacactgtatgcattgccctcgctgatgaaacatgtgagg 247 Query: 242 agccaaaaatcagaatgaa 260 | || || ||||||||||| Sbjct: 248 aacccaagatcagaatgaa 266
>dbj|AK118571.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL19-80-L03 Length = 2671 Score = 93.7 bits (47), Expect = 5e-16 Identities = 128/154 (83%), Gaps = 1/154 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 |||||||||||||||||||| || || || || |||||||| ||||| | ||| ||||| Sbjct: 408 tctgttcaccaatgcccagatgtcaagtatggaaagcgtgttcacatcttgcctgttgat 467 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || |||||||||||| ||||||||||| | |||||||| | | ||||||| ||||| || Sbjct: 468 gatacagttgaaggcgttactggaaacctc-tttgatgcttacctgaaaccttactttct 526 Query: 428 tgaagcttaccgtcctttaaggaagggagatctt 461 || || |||||||| | ||||||||||||||| Sbjct: 527 ggaggcgtaccgtccagtgaggaagggagatctt 560 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/79 (81%) Strand = Plus / Plus Query: 182 tcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgagg 241 ||||||||||||| |||| ||| || | ||||||| || || ||||| || ||||||| Sbjct: 283 tcaagggtaagaagaggaaggacactgtatgcattgccctcgctgatgaaacatgtgagg 342 Query: 242 agccaaaaatcagaatgaa 260 | || || ||||||||||| Sbjct: 343 aacccaagatcagaatgaa 361
>dbj|AK117125.1| Arabidopsis thaliana At5g03340 mRNA for putative transitional endoplasmic reticulum ATPase, complete cds, clone: RAFL16-66-D01 Length = 2664 Score = 93.7 bits (47), Expect = 5e-16 Identities = 128/154 (83%), Gaps = 1/154 (0%) Strand = Plus / Plus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 |||||||||||||||||||| || || || || |||||||| ||||| | ||| ||||| Sbjct: 401 tctgttcaccaatgcccagatgtcaagtatggaaagcgtgttcacatcttgcctgttgat 460 Query: 368 gacacagttgaaggcattactggaaacttngtttgatgccttcttgaaaccatacttcct 427 || |||||||||||| ||||||||||| | |||||||| | | ||||||| ||||| || Sbjct: 461 gatacagttgaaggcgttactggaaacctc-tttgatgcttacctgaaaccttactttct 519 Query: 428 tgaagcttaccgtcctttaaggaagggagatctt 461 || || |||||||| | ||||||||||||||| Sbjct: 520 ggaggcgtaccgtccagtgaggaagggagatctt 553 Score = 40.1 bits (20), Expect = 6.2 Identities = 64/79 (81%) Strand = Plus / Plus Query: 182 tcaagggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgagg 241 ||||||||||||| |||| ||| || | ||||||| || || ||||| || ||||||| Sbjct: 276 tcaagggtaagaagaggaaggacactgtatgcattgccctcgctgatgaaacatgtgagg 335 Query: 242 agccaaaaatcagaatgaa 260 | || || ||||||||||| Sbjct: 336 aacccaagatcagaatgaa 354
>gb|AC015985.10|ATAC015985 Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence, complete sequence Length = 72902 Score = 83.8 bits (42), Expect = 5e-13 Identities = 93/110 (84%) Strand = Plus / Minus Query: 55 ctcgagcggaagaagtcccccaaccgactcgtcgtcgacgaggccaccaacgacgacaac 114 |||||| |||||||||| || ||||| ||||||||||| ||||| | |||||| || ||| Sbjct: 47019 ctcgagaggaagaagtctccgaaccgtctcgtcgtcgatgaggctatcaacgatgataac 46960 Query: 115 tccgtcgtcgccctccaccccgacaccatggagaggctccagctcttccg 164 ||||||||| | || ||||| | |||||||||| ||| ||||||||||| Sbjct: 46959 tccgtcgtctctcttcaccctgcaaccatggagaagcttcagctcttccg 46910 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 ||||||||||||||||||||||| || ||||| |||||||| ||||| || ||| ||||| Sbjct: 46478 tctgttcaccaatgcccagacgtcaagtacggaaagcgtgttcacatcctgcctgttgat 46419 Query: 368 gacacagttgaaggcattactggaaac 394 || || |||||||| | ||||||||| Sbjct: 46418 gatactgttgaaggagtgactggaaac 46392 Score = 65.9 bits (33), Expect = 1e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 185 agggtaagaaaagganggatacaatctgcattgtgcttgcagatgacacttgtgaggagc 244 |||||||||| |||| ||| || ||||||||| ||||| ||||| || |||||||||| Sbjct: 46600 agggtaagaagaggaaggacactgtctgcattgctcttgctgatgagacatgtgaggagc 46541 Query: 245 caaaaatcagaatgaa 260 |||| ||||||||||| Sbjct: 46540 caaagatcagaatgaa 46525
>emb|AL162751.1|ATF12E4 Arabidopsis thaliana DNA chromosome 5, BAC clone F12E4 (ESSA project) Length = 121552 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 308 tctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgat 367 |||||||||||||||||||| || || || || |||||||| ||||| | ||| ||||| Sbjct: 26227 tctgttcaccaatgcccagatgtcaagtatggaaagcgtgttcacatcttgcctgttgat 26168 Query: 368 gacacagttgaaggcattactggaaac 394 || |||||||||||| ||||||||||| Sbjct: 26167 gatacagttgaaggcgttactggaaac 26141
>gb|BT012783.1| Lycopersicon esculentum clone 113773R, mRNA sequence Length = 2684 Score = 73.8 bits (37), Expect = 4e-10 Identities = 133/164 (81%), Gaps = 1/164 (0%) Strand = Plus / Plus Query: 294 ttggtgatgtggtgtctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcaca 353 |||| ||||| |||||||| |||||||||||||| || || || || |||||||| |||| Sbjct: 348 ttggagatgttgtgtctgtgcaccaatgcccagatgttaagtatgggaagcgtgtccaca 407 Query: 354 tacttcctattgatgacacagttgaaggcattactggaaacttngtttgatgccttcttg 413 |||||||||| ||||| ||| | ||||| | || || | || ||||||||| ||| || Sbjct: 408 tacttcctatagatgatacaatagaaggtctcaccgggga-tttgtttgatgcgttcctg 466 Query: 414 aaaccatacttccttgaagcttaccgtcctttaaggaagggaga 457 ||||| ||||| | ||||| || |||||||| ||||| ||||| Sbjct: 467 aaaccgtactttttggaagcatatcgtcctttgaggaaaggaga 510 Score = 48.1 bits (24), Expect = 0.025 Identities = 98/123 (79%) Strand = Plus / Plus Query: 142 atggagaggctccagctcttccgcggcgacaccgtcctgctcaagggtaagaaaaggang 201 ||||||| ||| ||||||||||| || || || | || ||||||| |||||||||| | Sbjct: 197 atggagaagctacagctcttccgtggagatacaattctcatcaagggaaagaaaaggaag 256 Query: 202 gatacaatctgcattgtgcttgcagatgacacttgtgaggagccaaaaatcagaatgaac 261 |||||| | ||||| ||||| ||||| || ||||| |||||||| || || |||||| Sbjct: 257 gatacagttgtcattgctcttgctgatgaaacatgtgatgagccaaagattaggatgaac 316 Query: 262 aag 264 ||| Sbjct: 317 aag 319
>ref|XM_961599.1| PREDICTED: Tribolium castaneum similar to CG2331-PA, isoform A, transcript variant 1 (LOC661187), mRNA Length = 2619 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 72 ccccaaccgactcgtcgtcgacgaggccaccaacgacgacaactccgtcgt 122 ||||||| ||||| | || || ||||||||||||||||||||||||||||| Sbjct: 166 ccccaacagactcctggtggaggaggccaccaacgacgacaactccgtcgt 216
>ref|XM_970790.1| PREDICTED: Tribolium castaneum similar to CG2331-PA, isoform A, transcript variant 3 (LOC661187), mRNA Length = 2637 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 72 ccccaaccgactcgtcgtcgacgaggccaccaacgacgacaactccgtcgt 122 ||||||| ||||| | || || ||||||||||||||||||||||||||||| Sbjct: 166 ccccaacagactcctggtggaggaggccaccaacgacgacaactccgtcgt 216
>ref|XM_424984.1| PREDICTED: Gallus gallus similar to valosin precursor (LOC427410), mRNA Length = 2303 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 320 tgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaa 379 |||||||| |||||||||||||||||| | ||| | || || |||||||||||||| ||| Sbjct: 453 tgcccagatgtgaaatacggcaagcgtatccacgtgctgccaattgatgacacagtagaa 512 Query: 380 gg 381 || Sbjct: 513 gg 514
>emb|AJ719285.1| Gallus gallus mRNA for hypothetical protein, clone 1c3 Length = 2934 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 320 tgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaa 379 |||||||| |||||||||||||||||| | ||| | || || |||||||||||||| ||| Sbjct: 465 tgcccagatgtgaaatacggcaagcgtatccacgtgctgccaattgatgacacagtagaa 524 Query: 380 gg 381 || Sbjct: 525 gg 526
>dbj|AB195711.1| Gallus gallus vcp mRNA for valosin containing protein, complete cds Length = 2916 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 320 tgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttgaa 379 |||||||| |||||||||||||||||| | ||| | || || |||||||||||||| ||| Sbjct: 415 tgcccagatgtgaaatacggcaagcgtatccacgtgctgccaattgatgacacagtagaa 474 Query: 380 gg 381 || Sbjct: 475 gg 476
>emb|Y09396.1|CACAFP C.annuum mRNA for CDC48p-like protein Length = 2682 Score = 56.0 bits (28), Expect = 1e-04 Identities = 70/84 (83%) Strand = Plus / Plus Query: 299 gatgtggtgtctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatactt 358 ||||| || ||||| ||||| || ||||| || || || || |||||||||||||||||| Sbjct: 343 gatgttgtatctgtccaccagtgtccagatgtcaagtatgggaagcgtgtgcacatactt 402 Query: 359 cctattgatgacacagttgaaggc 382 ||||| ||||| ||| | |||||| Sbjct: 403 cctatagatgatacaatagaaggc 426
>dbj|AB181225.1| Eisenia fetida evcp-1 mRNA for valosin containing protein-1, complete cds Length = 2932 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand = Plus / Plus Query: 347 gtgcacatacttcctattgatgacacagttgaaggcattactggaaacttngtttgatgc 406 |||||||| || || |||||||||||||||||||| ||||||| ||| | ||||| | Sbjct: 449 gtgcacatcctaccaattgatgacacagttgaaggtcttactggtaacctt-tttgaggt 507 Query: 407 cttcttgaaaccatacttccttgaagcttaccgtcct 443 || | |||| ||||| ||||| || |||||||||||| Sbjct: 508 ctacctgaagccatatttcctggaggcttaccgtcct 544
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 250 atcagaatgaacaagaccgtcagga 274 ||||||||||||||||||||||||| Sbjct: 6217401 atcagaatgaacaagaccgtcagga 6217377 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 250 atcagaatgaacaagaccgtcagga 274 ||||||||||||||||||||||||| Sbjct: 2149011 atcagaatgaacaagaccgtcagga 2148987 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 250 atcagaatgaacaagaccgtcagga 274 ||||||||||||||||||||||||| Sbjct: 1643694 atcagaatgaacaagaccgtcagga 1643718
>gb|CP000121.1| Anabaena variabilis ATCC 29413 plasmid C, complete sequence Length = 300758 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 250 atcagaatgaacaagaccgtcagga 274 ||||||||||||||||||||||||| Sbjct: 226735 atcagaatgaacaagaccgtcagga 226711
>gb|CP000119.1| Anabaena variabilis ATCC 29413 plasmid A, complete sequence Length = 366354 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Minus Query: 250 atcagaatgaacaagaccgtcagga 274 ||||||||||||||||||||||||| Sbjct: 78045 atcagaatgaacaagaccgtcagga 78021
>gb|BC023563.1| Homo sapiens valosin-containing protein, mRNA (cDNA clone IMAGE:4422977), **** WARNING: chimeric clone **** Length = 5159 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 2488 attgatgacacagtggaaggcattactgg 2516
>gb|BC021055.1| Homo sapiens cDNA clone IMAGE:2822943, **** WARNING: chimeric clone **** Length = 4821 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 651 attgatgacacagtggaaggcattactgg 679
>ref|NM_007126.2| Homo sapiens valosin-containing protein (VCP), mRNA Length = 3198 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 567 attgatgacacagtggaaggcattactgg 595
>gb|BC096751.1| Homo sapiens cDNA clone IMAGE:5296598, containing frame-shift errors Length = 2894 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 603 attgatgacacagtggaaggcattactgg 631
>emb|AL353795.13| Human DNA sequence from clone RP11-182N22 on chromosome 9 Contains a novel gene, the VCP gene for valosin-containing protein, the FANCG gene for Fanconi anemia, complementation group G (FAG, XRCC9), the gene for phosphatidylinositol glycan class O (PIGO), a novel gene, the STOML2 gene for stomatin (EPB72)-like 2 (SLP-2), a novel gene (KIAA1539) (FLJ11560), a zinc finger protein pseudogene, the 5' end of the UNC13 gene for unc-13-like (C. elegans) (hmunc13) and nine CpG islands, complete sequence Length = 195102 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 36482 attgatgacacagtggaaggcattactgg 36454
>emb|CR606334.1| full-length cDNA clone CS0DM007YL14 of Fetal liver of Homo sapiens (human) Length = 2858 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 594 attgatgacacagtggaaggcattactgg 622
>gb|AC004472.1|AC004472 Homo sapiens chromosome 9, P1 clone 11659, complete sequence Length = 86765 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 46681 attgatgacacagtggaaggcattactgg 46653
>gb|AF313485.1|AF313485S1 Homo sapiens tissue-type kidney valosin-containing protein mRNA, partial cds Length = 923 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 170 attgatgacacagtggaaggcattactgg 198
>gb|AF100752.1|AF100752 Homo sapiens transitional endoplasmic reticulum ATPase mRNA, complete cds Length = 2887 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 567 attgatgacacagtggaaggcattactgg 595
>gb|BC110913.1| Homo sapiens valosin-containing protein, mRNA (cDNA clone MGC:131997 IMAGE:6502535), complete cds Length = 3212 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||||||||| Sbjct: 554 attgatgacacagtggaaggcattactgg 582
>gb|BT014585.1| Lycopersicon esculentum clone 134043F, mRNA sequence Length = 2708 Score = 46.1 bits (23), Expect = 0.10 Identities = 59/71 (83%) Strand = Plus / Plus Query: 299 gatgtggtgtctgttcaccaatgcccagacgtgaaatacggcaagcgtgtgcacatactt 358 ||||| || ||||| ||||| || ||||| || || || || |||||||| |||||||| Sbjct: 378 gatgttgtatctgtgcaccagtgtccagatgtcaagtatgggaagcgtgtccacatactc 437 Query: 359 cctattgatga 369 ||||||||||| Sbjct: 438 cctattgatga 448
>gb|AY973543.1| Hyaloperonospora parasitica isolate Emoy2 clone BAC 9B13 and BAC 4C4, complete sequence Length = 120624 Score = 46.1 bits (23), Expect = 0.10 Identities = 41/47 (87%) Strand = Plus / Plus Query: 82 ctcgtcgtcgacgaggccaccaacgacgacaactccgtcgtcgccct 128 |||||||||||||| ||| |||||||||||||| ||||| ||||| Sbjct: 43250 ctcgtcgtcgacgaagccctaaacgacgacaactcggtcgtggccct 43296
>ref|XM_385706.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05530.1) partial mRNA Length = 2466 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Plus Query: 150 gctccagctcttccgcggcgacaccgtcct 179 ||||||||||||||| || ||||||||||| Sbjct: 198 gctccagctcttccgtggtgacaccgtcct 227
>emb|AL354893.14| Human DNA sequence from clone RP11-80I15 on chromosome 9 Contains an RPS26 (ribosomal protein S26) pseudogene, the 3' end of the FANCC gene for Fanconi anemia complementation group C, the 3' end of gene FLJ14675, a novel gene and a CpG island, complete sequence Length = 103980 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 ccatggagaggctccagctctt 161 |||||||||||||||||||||| Sbjct: 29014 ccatggagaggctccagctctt 28993
>gb|AY220878.1| Homo sapiens Fanconi anemia, complementation group C (FANCC) gene, complete cds Length = 221989 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 140 ccatggagaggctccagctctt 161 |||||||||||||||||||||| Sbjct: 175366 ccatggagaggctccagctctt 175345
>dbj|AK185530.1| Mus musculus cDNA, clone:Y0G0134G05, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000030164, based on BLAT search Length = 128 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 365 gatgacacagttgaaggcattactgg 390 ||||||||||| |||||||||||||| Sbjct: 22 gatgacacagtggaaggcattactgg 47
>gb|BC060518.1| Rattus norvegicus valosin-containing protein, mRNA (cDNA clone MGC:72335 IMAGE:5597843), complete cds Length = 3214 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||| ||||| Sbjct: 566 attgatgacacagtggaaggcatcactgg 594
>ref|XM_505319.1| Yarrowia lipolytica CLIB122, YALI0F12155g predicted mRNA Length = 2445 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Plus Query: 85 gtcgtcgacgaggccaccaacgacgacaactcc 117 ||||| ||||| ||||||||||| ||||||||| Sbjct: 118 gtcgtggacgatgccaccaacgatgacaactcc 150
>ref|XM_774925.1| PREDICTED: Strongylocentrotus purpuratus similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP), transcript variant 1 (LOC575609), mRNA Length = 3597 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 154 cagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagg 198 ||||||||||| || ||||| ||| ||||||| || ||||||||| Sbjct: 13 cagctcttccgtggagacacagtcatgctcaaaggcaagaaaagg 57
>ref|XM_796615.1| PREDICTED: Strongylocentrotus purpuratus similar to Transitional endoplasmic reticulum ATPase (TER ATPase) (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP), transcript variant 2 (LOC575609), mRNA Length = 3621 Score = 42.1 bits (21), Expect = 1.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 154 cagctcttccgcggcgacaccgtcctgctcaagggtaagaaaagg 198 ||||||||||| || ||||| ||| ||||||| || ||||||||| Sbjct: 13 cagctcttccgtggagacacagtcatgctcaaaggcaagaaaagg 57
>gb|U11760.1|RNU11760 Rattus norvegicus transitional endoplasmic reticulum ATPase mRNA, complete cds Length = 2870 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||| ||||| Sbjct: 598 attgatgacacagtggaaggcatcactgg 626
>ref|NM_053864.2| Rattus norvegicus valosin-containing protein (Vcp), mRNA Length = 3214 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 362 attgatgacacagttgaaggcattactgg 390 |||||||||||||| |||||||| ||||| Sbjct: 566 attgatgacacagtggaaggcatcactgg 594
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 85 gtcgtcgacgaggccaccaacgacgacaactcc 117 ||||| ||||| ||||||||||| ||||||||| Sbjct: 1603182 gtcgtggacgatgccaccaacgatgacaactcc 1603150
>gb|AC137745.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0041J18, complete sequence Length = 129523 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcaagcgtgtgcacatactt 358 |||||||||||||||||||| Sbjct: 8493 gcaagcgtgtgcacatactt 8512
>ref|XM_587510.2| PREDICTED: Bos taurus similar to zinc finger protein 609, transcript variant 1 (LOC510374), mRNA Length = 4544 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 gctcaagggtaagaaaagga 199 |||||||||||||||||||| Sbjct: 4453 gctcaagggtaagaaaagga 4434
>ref|XM_322103.1| Neurospora crassa OR74A hypothetical protein (NCU00018.1) partial mRNA Length = 2475 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 acaccatggagaggctccagctcttccg 164 ||||||||||| ||||||||||||||| Sbjct: 191 acaccatggagcagctccagctcttccg 218
>ref|XM_951912.1| Neurospora crassa OR74A hypothetical protein (NCU00018.1) partial mRNA Length = 2475 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 137 acaccatggagaggctccagctcttccg 164 ||||||||||| ||||||||||||||| Sbjct: 191 acaccatggagcagctccagctcttccg 218
>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057E15, complete sequence Length = 149035 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcaagcgtgtgcacatactt 358 |||||||||||||||||||| Sbjct: 121323 gcaagcgtgtgcacatactt 121342
>ref|XM_384626.1| Gibberella zeae PH-1 chromosome 2 predicted protein (FG04450.1) partial mRNA Length = 723 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gtcgtcgacgaggccaccaa 104 |||||||||||||||||||| Sbjct: 160 gtcgtcgacgaggccaccaa 179
>ref|XM_948744.1| Theileria annulata strain Ankara transitional endoplasmic reticulum ATPase (TA06500) partial mRNA Length = 2469 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 tgaaaccatacttccttgaa 431 |||||||||||||||||||| Sbjct: 452 tgaaaccatacttccttgaa 471
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tggagaggctccagctcttc 162 |||||||||||||||||||| Sbjct: 945850 tggagaggctccagctcttc 945831
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 gccaccaacgacgacaactc 116 |||||||||||||||||||| Sbjct: 1260775 gccaccaacgacgacaactc 1260794
>gb|AC155909.9| Mus musculus 10 BAC RP24-477D23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195877 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 tcctattgatgacacagttg 377 |||||||||||||||||||| Sbjct: 128777 tcctattgatgacacagttg 128758
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcaagcgtgtgcacatactt 358 |||||||||||||||||||| Sbjct: 16480724 gcaagcgtgtgcacatactt 16480743
>gb|AC164979.2| Mus musculus BAC clone RP23-244J23 from chromosome 16, complete sequence Length = 202286 Score = 40.1 bits (20), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 185 agggtaagaaaagganggataca 207 ||||||||||||||| ||||||| Sbjct: 116330 agggtaagaaaaggaaggataca 116308
>ref|NM_214280.1| Sus scrofa valosin-containing protein (VCP), mRNA Length = 3147 Score = 40.1 bits (20), Expect = 6.2 Identities = 59/72 (81%) Strand = Plus / Plus Query: 319 atgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttga 378 |||||| || ||||| |||||||| ||| | || |||| || || ||||||||||| || Sbjct: 484 atgccctgatgtgaagtacggcaaacgtatccatgtactacccatcgatgacacagtgga 543 Query: 379 aggcattactgg 390 |||||| ||||| Sbjct: 544 aggcatcactgg 555
>gb|AY190939.1| Drosophila erecta clone DERF01_42_I03 (D1420) genomic sequence Length = 45909 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 154 cagctcttccgcggcgacaccgtc 177 ||||||||||| |||||||||||| Sbjct: 36942 cagctcttccgtggcgacaccgtc 36965
>emb|AJ495765.2|POL495765 Polytomella sp. 'Pringsheim 198.80' partial mRNA for mitochondrial targeted aldehyde-alcohol dehydrogenase (adhE gene) Length = 2714 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 120 cgtcgccctccaccccgacaccat 143 ||||||| |||||||||||||||| Sbjct: 1716 cgtcgccttccaccccgacaccat 1739
>emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chromosome 16, complete sequence Length = 194283 Score = 40.1 bits (20), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 185 agggtaagaaaagganggataca 207 ||||||||||||||| ||||||| Sbjct: 138782 agggtaagaaaaggaaggataca 138760
>gb|AF030027.1|AF030027 Equine herpesvirus 4 strain NS80567, complete genome Length = 145597 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 actcgtcgtcgacgaggcca 100 |||||||||||||||||||| Sbjct: 58490 actcgtcgtcgacgaggcca 58471
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 gacgaggccaccaacgacgacaactccg 118 |||||||||||| |||||||| |||||| Sbjct: 3539099 gacgaggccaccgacgacgactactccg 3539126
>gb|AY609417.1| Sus scrofa clone Clu_1080.scr.msk.p1.Contig5, mRNA sequence Length = 3968 Score = 40.1 bits (20), Expect = 6.2 Identities = 59/72 (81%) Strand = Plus / Plus Query: 319 atgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttga 378 |||||| || ||||| |||||||| ||| | || |||| || || ||||||||||| || Sbjct: 489 atgccctgatgtgaagtacggcaaacgtatccatgtactacccatcgatgacacagtgga 548 Query: 379 aggcattactgg 390 |||||| ||||| Sbjct: 549 aggcatcactgg 560
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gcaagcgtgtgcacatactt 358 |||||||||||||||||||| Sbjct: 16571728 gcaagcgtgtgcacatactt 16571747
>emb|CT032896.1| Platynereis dumerilii EST IB0AAA29DE01FM1 Length = 853 Score = 40.1 bits (20), Expect = 6.2 Identities = 72/88 (81%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 350 cacatacttcctattgatgacacagttgaaggcattactggaaacttngtttgatgcctt 409 ||||| ||||| |||||||||||| |||| || || || |||||||| |||||| | | Sbjct: 835 cacattcttcccattgatgacacaattgagggaatcacaggaaactt-gtttgaagtgta 777 Query: 410 cttgaaaccatacttccttgaagcttac 437 | |||| ||||| |||||||| |||||| Sbjct: 776 cctgaagccatatttccttgaggcttac 749
>gb|M30143.1|PIGVALA Pig valosin-containing protein (VCP) mRNA, complete cds Length = 3147 Score = 40.1 bits (20), Expect = 6.2 Identities = 59/72 (81%) Strand = Plus / Plus Query: 319 atgcccagacgtgaaatacggcaagcgtgtgcacatacttcctattgatgacacagttga 378 |||||| || ||||| |||||||| ||| | || |||| || || ||||||||||| || Sbjct: 484 atgccctgatgtgaagtacggcaaacgtatccatgtactacccatcgatgacacagtgga 543 Query: 379 aggcattactgg 390 |||||| ||||| Sbjct: 544 aggcatcactgg 555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,012,743 Number of Sequences: 3902068 Number of extensions: 4012743 Number of successful extensions: 80577 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 80057 Number of HSP's gapped (non-prelim): 488 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
