ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal39b20 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 136 bits (342), Expect = 2e-32 Identities = 64/65 (98%), Positives = 64/65 (98%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 182 VQLADTYMS AALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS Sbjct: 400 VQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 459 Query: 183 CLYTF 197 CLYTF Sbjct: 460 CLYTF 464
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 105 bits (261), Expect = 4e-23 Identities = 48/65 (73%), Positives = 56/65 (86%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 182 VQLA+TY+S AALGDAN DA+ G+FYGKGAQQ LPVPEGCTD A+N+DPTARSDDG+ Sbjct: 410 VQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGT 469 Query: 183 CLYTF 197 C+Y F Sbjct: 470 CVYNF 474
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 101 bits (251), Expect = 5e-22 Identities = 47/63 (74%), Positives = 53/63 (84%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 182 VQLAD YMS AALGDAN+DA+ G+F+GK AQQ +LPV +GCTD AKNYDPTARSDDGS Sbjct: 408 VQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGS 467 Query: 183 CLY 191 C Y Sbjct: 468 CTY 470
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 100 bits (249), Expect = 9e-22 Identities = 49/67 (73%), Positives = 53/67 (79%), Gaps = 2/67 (2%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFYGKGAQQ--GTLPVPEGCTDQNAKNYDPTARSDD 176 VQLAD YMS AALGDAN DA+K G+FYG A Q G +PVPEGCTD A NYDPTARSDD Sbjct: 410 VQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDD 469 Query: 177 GSCLYTF 197 GSC+Y F Sbjct: 470 GSCVYKF 476
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/29 (79%), Positives = 25/29 (86%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFYGK 89 VQLAD Y+S AALG AN DAMKTG+FYGK Sbjct: 397 VQLADKYLSEAALGQANDDAMKTGAFYGK 425
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/28 (82%), Positives = 25/28 (89%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFYG 86 VQLA+ Y+S AALGDAN DAMKTGSFYG Sbjct: 400 VQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/28 (78%), Positives = 24/28 (85%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFYG 86 VQLAD Y+S AALGDAN DAM TG+FYG Sbjct: 410 VQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/27 (74%), Positives = 25/27 (92%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFY 83 VQLAD Y++ AALG+AN+DAMKTGSF+ Sbjct: 406 VQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 44.7 bits (104), Expect = 6e-05 Identities = 21/26 (80%), Positives = 23/26 (88%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSF 80 VQLAD YMS AALGDANQDA+K G+F Sbjct: 410 VQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/27 (66%), Positives = 25/27 (92%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFY 83 VQLAD Y++ AALG+AN+DA+K+GSF+ Sbjct: 414 VQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 42.4 bits (98), Expect = 3e-04 Identities = 18/27 (66%), Positives = 25/27 (92%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFY 83 VQLAD Y++ AALG+AN+DA+K+GSF+ Sbjct: 412 VQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 40.8 bits (94), Expect = 9e-04 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSF 80 VQLA+TY+ AALGDAN DA+ TG+F Sbjct: 414 VQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/27 (66%), Positives = 21/27 (77%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTGSFY 83 VQLAD Y+ AALGDAN DA+ GSF+ Sbjct: 414 VQLADKYLKEAALGDANADAINNGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/24 (70%), Positives = 20/24 (83%) Frame = +3 Query: 3 VQLADTYMSPAALGDANQDAMKTG 74 VQLA+TY+ AALGDAN DA+ TG Sbjct: 409 VQLAETYLKEAALGDANADAINTG 432
>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial| protein Length = 442 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = +2 Query: 71 WFLLR*RSTARYFARAGRLHRPKCQELRPNGKERRR 178 +FL R RS R AR R K Q LRPNG E+RR Sbjct: 139 FFLARDRSAKRERAR-----RRKGQTLRPNGNEQRR 169
>S20AB_XENLA (Q6PB26) Sodium-dependent phosphate transporter 1-B (Solute carrier| family 20 member 1-B) Length = 685 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%) Frame = -3 Query: 194 GVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRILVSITQSC 33 G++ ++AP W++VLG ++ F G + + SF GT++ +V++ Q+C Sbjct: 15 GIQDVHIMAPYLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQAC 67
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -2 Query: 180 CRRRSLPLGRSSWHFGRCNLP 118 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>TTUC1_AGRVI (Q44471) Probable tartrate dehydrogenase/decarboxylase ttuC (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 364 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 47 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 151 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>TTUC5_AGRVI (O34295) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 358 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 47 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 151 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>TTUC3_AGRVI (O34296) Probable tartrate dehydrogenase/decarboxylase ttuC' (EC| 1.1.1.93) (EC 4.1.1.73) (TDH) (D-malate dehydrogenase [decarboxylating]) (EC 1.1.1.83) Length = 358 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +2 Query: 47 C*PGCDEDWFLLR*RSTARYFARAGRLHRPKCQEL 151 C PG D DW ++R S Y GR HR +E+ Sbjct: 120 CGPG-DLDWVIVRENSEGEYSGHGGRAHRGLPEEV 153
>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic| region Length = 1764 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = +3 Query: 114 VPEGCTDQNAKNYDPTARSD 173 VPE TD N NYD T R D Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402
>S20A1_XENTR (Q5BL44) Sodium-dependent phosphate transporter 1 (Solute carrier| family 20 member 1) Length = 685 Score = 27.3 bits (59), Expect = 9.8 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Frame = -3 Query: 212 KVACLKGVKAAAVVAPCRWVVVLGILVG--ATFRHGQSTLLCSFTVEGTSLHRILVSITQ 39 +V G++ ++ P W++VLG ++ F G + + SF GT++ +V++ Q Sbjct: 9 EVTSALGIENVKIMEPFLWMLVLGFVIAFVLAFSVGANDVANSF---GTAVGSGVVTLRQ 65 Query: 38 SC 33 +C Sbjct: 66 AC 67
>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c| Length = 288 Score = 27.3 bits (59), Expect = 9.8 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -2 Query: 228 KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 124 ++S+ +S KGS + PL + W FG CN Sbjct: 4 RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38
>DNLI_VARV (P33798) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 21 YMSPAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 143 Y++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCV (P16272) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 21 YMSPAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 143 Y++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCC (P20492) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 21 YMSPAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 143 Y++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>DNLI_VACCA (O57250) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase| [ATP]) Length = 552 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Frame = +3 Query: 21 YMSPAALGDANQDAMKTGSFYGKGAQQGTLPV-PEGCTDQNA 143 Y++ ++ D+ D + G++YGKGA+ G + V GC D + Sbjct: 402 YLNEGSMADS-ADLVVLGAYYGKGAKGGIMAVFLMGCYDDES 442
>TFE2_MOUSE (P15806) Transcription factor E2-alpha (Immunoglobulin| enhancer-binding factor E12/E47) (Transcription factor 3) (TCF-3) (Transcription factor A1) Length = 651 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/51 (25%), Positives = 24/51 (47%) Frame = +3 Query: 30 PAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 182 P A G + ++ F G G + G +DQN+ ++DP+ +G+ Sbjct: 30 PVANGKSRPASLGGTQFAGSGLEDRPSSGSWGSSDQNSSSFDPSRTYSEGA 80
>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)| (FGAM synthase I) Length = 220 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = -3 Query: 254 WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 93 ++RCG + ++K K AVV C VL G+L GA R+ +C Sbjct: 57 YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,756,895 Number of Sequences: 219361 Number of extensions: 949321 Number of successful extensions: 2109 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2073 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2107 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
