>TOP1M_HUMAN (Q969P6) DNA topoisomerase I, mitochondrial precursor (EC 5.99.1.2)|
           (TOP1mt)
          Length = 601

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 238 KQSIALLGATPSGPALRGVAKSRSRQQAAGERFGFPRHRHG 116
           + ++ LLG  P  PA RGV  SR  Q+ +G R+   +H  G
Sbjct: 10  RAALTLLGEVPRRPASRGVPGSRRTQKGSGARWEKEKHEDG 50

>J1S_HCMVA (P17144) Hypothetical protein J1S|
          Length = 224

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 159 CWRERDLATPRSAGPDGVAPSKAMDCLPR 245
           C   R L  PRS GP  +AP +   C+PR
Sbjct: 91  CVASRPLFPPRSPGPSSLAPGRCFSCVPR 119

>J1L_HCMVA (P17143) Hypothetical protein J1L|
          Length = 309

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 159 CWRERDLATPRSAGPDGVAPSKAMDCLPR 245
           C   R L  PRS GP  +AP +   C+PR
Sbjct: 208 CVASRPLFPPRSPGPSSLAPGRCFSCVPR 236

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 32.3 bits (72), Expect = 0.33
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = -3

Query: 248 VPRQTIHSLARCXAVGPGAP---RRGQIPLAPASRWRTLWIP*ASPRQQHRSTTQEGATA 78
           V R+     A+  A G   P   RR   P APAS   +   P A  RQ   ++  + A  
Sbjct: 42  VARRLKAEFAKDNAKGDSKPVQQRRPAAPSAPASTSSSAPTPAAPARQASPASAHQQAPT 101

Query: 77  PAMPTVRKNGG 45
           P  PT R  GG
Sbjct: 102 PGAPTPRPQGG 112

>KCNAE_DROME (Q02280) Potassium voltage-gated channel protein eag (Ether-a-go-go|
            protein)
          Length = 1174

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 245  PRQTIHSLARCXAVGP-GAPRRGQIPLAPASRWRTLWIP*ASPRQQHRSTTQEGATAP 75
            P+QT+ S A      P G    G    APAS         A  +QQH+ST  +  T P
Sbjct: 1048 PKQTLASTAGTATAAPAGVAGSGMTSSAPAS---------ADQQQQHQSTADQSPTTP 1096

>UL13_HCMVA (P16755) Hypothetical protein UL13|
          Length = 473

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 152 WRTLWIP*ASPRQQHRSTTQEGATAPAMPTVRKNGGHDREQ 30
           WR  W+P    RQ   +  QE A  P  PTV +     R+Q
Sbjct: 312 WRRTWVP----RQNPAAEAQELAVIPPAPTVLRQNEEPRQQ 348

>NPD_XANCP (Q8PDM9) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein|
           SIR2 homolog)
          Length = 293

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 133 GIQSVRQRLAGASGI-WPRLGAPGPTAXHRARLWIVCRGTLQ 255
           G  S RQR    S + WPR G   P A H A   +  RG L+
Sbjct: 59  GELSTRQRYWARSLVGWPRFGLARPNATHHALAALEARGQLE 100

>NPD_XANAC (Q8PQK3) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein|
           SIR2 homolog)
          Length = 293

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 133 GIQSVRQRLAGASGI-WPRLGAPGPTAXHRARLWIVCRGTLQ 255
           G  S RQR    S + WPR G   P A H A   +  RG L+
Sbjct: 59  GELSTRQRYWARSLVGWPRFGLAQPNATHHALAALEARGQLE 100

>ORC2_SCHPO (Q09142) Origin recognition complex subunit 2|
          Length = 535

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 244 LGKQSIALLGATPSGPALRGVAKSRSRQQAAGERFGFPRHRHG 116
           LGK+      +TP+ P+L     S SR+    +  GF    HG
Sbjct: 148 LGKEDNRSRSSTPASPSLESHEFSESREAGLSQSNGFEARSHG 190

>MURD_PROMM (Q7V5V5) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 460

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 151 QRLAGASGIWPRLGAPGPTAXHRARLWIVCRGTLQD 258
           QR +   G+W     PG TA HRA  WI   G +++
Sbjct: 232 QRSSWDKGLWVSSEGPG-TANHRADFWIDAEGLVRE 266

>PHOSP_HENDV (O55778) Phosphoprotein (Protein P)|
          Length = 707

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 122 PRQQHRSTTQEGATAPAMPTVRKNGGHDRE 33
           P Q+ +S T E     A   V +N GHD+E
Sbjct: 434 PNQESKSVTAENVQLSAPSAVTRNEGHDQE 463

>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
 Frame = +3

Query: 150  PAACWRERDLATPRS-------AGPDGVAPSKAMDCLPRHA 251
            P+A   E   A+ RS       A P+G  P  A  C+PRH+
Sbjct: 6828 PSASLPEEAEASERSTEAPAPPASPEGAGPPAAQGCVPRHS 6868

>MMP7_FELCA (P55032) Matrilysin precursor (EC 3.4.24.23) (Pump-1 protease)|
          (Uterine metalloproteinase) (Matrix
          metalloproteinase-7) (MMP-7) (Matrin) (Fragment)
          Length = 262

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 80 APAMPTVRKNGGHDREQWR 24
          +PA+P  R+ GGH   QW+
Sbjct: 10 SPALPLPREAGGHSESQWK 28


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,882,647
Number of Sequences: 219361
Number of extensions: 613250
Number of successful extensions: 2097
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2096
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)